mRNA_Ecto-sp13_S_contig1262.2168.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: D7FKE9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE9_ECTSI) HSP 1 Score: 1146 bits (2965), Expect = 0.000e+0 Identity = 752/854 (88.06%), Postives = 772/854 (90.40%), Query Frame = 1
Query: 223 PQEATCDVECAMKVEEIRIMSKKRKQSQRVGG-NGALASKGGANNSAKAAKRPLSNSNGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKD-------SKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGGXXXXXXXXXXXXXXXXXXXXXEVQDFSPGRGRDAETPGCGSSCDCVTTSNLSGGSGIGAGSSSLVDVDGREEAARSTSTTGFAQTANGDEGAEGSGGGAKASVQLAGGGTEAVGGAQRLQPPAEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRPQGREHLPKHLAEFSGXXXXXXXXXXXXXXXXXXXXXXTAASAVGVCPPSDLQYAGSVVGGEGNNRVPKEVHLVGGGCGSGVSTAGYSSTLSDSSSLVWSGGGEDKLAGSPKEAEQGGRRAAAAERPRRRERPCALNHAGASQLEASAAVDASMDAARAAASKAGQSVVDHMRGDGTGEHLGDAQQQQQFDPAAIREAFSVQAGAGRV-APSHSQGLSGRQGAGLAATRGYVPGDYTLTPKAPEDGGAGMVVPHARGQPAVLGAELLAGEGALGAHKSIFAARSPAEARAALAAATLAPVTSTGDASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFGQRGWYGXXXXXXXXXXXXXXXXFGEAGGGALRXXXXVGKEGGGNGYGAGVDLGNNKEQPRLDSLSLQPSDAGDPSAMMGLLHQDDMFDFGMLDREGELKSASGDSIPPGPAVTRPNGDEHSTLFSFLME 2757
P+EATCDVECAMKVEEIRIMSKKRKQSQRVGG NGALAS+ GAN SAKAAKRPLSNSNGCGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX SK AASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLG XXXXXXXXXXXXXXXXXXXX +V+DFSPGRGRDAETP CGSSCDCV TS LSGGSGIG GS+SL + DGR EAARS STTGFAQ A+GDEGA+GSGGGAKAS QLAGGGTEAVGGAQRLQ P EAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVR QGREH+P+H AEFSGXXXXXXXXXXXXXXXXXXXXXX AASAVG CPPSDLQYAGS+VG EGN RVPKEVHLVGGGCGSGVSTAGYSS LSDSSSLVWSGGGEDKLAGSPKEAEQGGR AAAAERPRRRERP LNHAGASQLE +AA D SMD+ARAAASKA SV DHMRGDGTGE LGD QQQQQFDPAA+REAFSVQA AGRV APSHSQGLSGRQGAGLA RGY+ GDYTLTPKAPEDGG+G + PHARGQPAVLGAELLAGEGALGAHKSIFAARSPAEAR ALA+ATLAPVTSTG+ASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFGQRGW G XXXXXXXXXX FGEAGGGALR GKEGG NG GAG DLGN+KEQ RLDSLSLQPSDAGDPSAMMGLL QDDMFDFGMLDREGELKSA GDS PPGP V RPNGDEHSTLFSFLME
Sbjct: 2 PKEATCDVECAMKVEEIRIMSKKRKQSQRVGGGNGALASEEGANISAKAAKRPLSNSNGCGAGTQSAKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKHAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGXXXXXXXXXXXXXXXXXXXXXDDVKDFSPGRGRDAETPECGSSCDCVDTSKLSGGSGIGGGSNSLAETDGRGEAARSKSTTGFAQAASGDEGAKGSGGGAKASAQLAGGGTEAVGGAQRLQLPGEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGREHVPQHPAEFSGXXXXXXXXXXXXXXXXXXXXXXXAASAVGFCPPSDLQYAGSIVGAEGNIRVPKEVHLVGGGCGSGVSTAGYSSNLSDSSSLVWSGGGEDKLAGSPKEAEQGGRGAAAAERPRRRERPGVLNHAGASQLEGAAAADVSMDSARAAASKARPSVADHMRGDGTGERLGDGQQQQQFDPAAMREAFSVQAVAGRVVAPSHSQGLSGRQGAGLAPPRGYMAGDYTLTPKAPEDGGSGRLAPHARGQPAVLGAELLAGEGALGAHKSIFAARSPAEARVALASATLAPVTSTGNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFGQRGWCGGXXXXXXXXXXVATPAFGEAGGGALRGGSGAGKEGGXNGDGAGADLGNSKEQQRLDSLSLQPSDAGDPSAMMGLLPQDDMFDFGMLDREGELKSALGDSTPPGPPVARPNGDEHSTLFSFLME 855
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A6H5KUD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUD1_9PHAE) HSP 1 Score: 982 bits (2539), Expect = 0.000e+0 Identity = 671/860 (78.02%), Postives = 690/860 (80.23%), Query Frame = 1
Query: 223 PQEATCDVECAMKVEEIRIMSKKRKQSQRVGGNGALASKGGANNSAKAAKRPLSNSNGCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDSKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYNYLTDLDGGKSLGGXXXXXXXXXXXXXXXXXXXXXEVQDFSPGRGRDAETPGCGSSCDCVTTSNLSGGSGIGAGSSSLVDVDGREEAARSTSTTGFAQTANGDEGAEGSGGGAKASVQLAGGGTEAVGGAQRLQPPAEAAAGEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRPQGREHLPKHLAEFSGXXXXXXXXXXXXXXXXXXXXXX---TAASAVGVCPPSDLQYAGSVVGGEGNNRVPKEVHLVGGGCGSGVSTAGYSSTLSDSSSLVWSGGGEDKLAGSPKEAEQGGRRAAAAERPRRRERPCALNHAGASQLEASAAVDASMDAARAAASKAGQSVVDHMRGDGTGEHLGDAQQQQQFDPAAIREAFSVQAGAGRVAPSHSQGLSGRQGAGLAATRGYVPGDYTLTPKAPEDGGAGMVVPHARGQPAVLGAELLAGEGALGAHKSIFAARSPAEARAALAAATLAPVTSTGDASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFGQRGWYGXXXXXXXXXXXXXXXX------------FGEAGGGALRXXXXVGKEGGGNGYGAGVDLGNNKEQPRLDSLSLQPSDAGDPSAMMGLLHQDDMFDFGMLDREGELKSASGDSIPPGPAVTRPNGDEHSTLFSFLME 2757
P+EATCDVECAMKVEEIRIMSKKRKQSQRVG XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+RRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQK R XXXXXXXXXX+++DFSPGRGRDAETPGCGSSCDCV TSNLSGGSG+ G EAARS STTGFAQTAN DEGAEGSGGGAKAS QLAGGGTEAVGGAQRLQ P EAA GEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVR QG EHLPKH AEFSGXXXXXXXXXXXX XXXXXX T ASAVGVCPPSDLQYAGS VG E NNR PKEVHLVGGGCGSGVSTAG SSTLSDSSSLVWS GGED+ AGSPKEAEQGG+ AA AERPRRRERPCALN+ GASQLEA+AA D SMDAARA ASKA QSV DH+RGDGTGEHLGDAQQQQQFDPAA+REAFSVQAGAGRV PSHSQGLSGRQGAGLAA + YVPGDYTLTPKAP++GGAG V P RGQPAVLGAELL GEGALGAHK+IFAARSPAEARAALAAA LAPVTST +ASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNF +RGW G XXXXXXXXXX X FGEAGGGALR VGKEG GNG+GAG DLGNNKEQ RLDSLSLQPSDAGDPSAMMGLLHQDDMFDFGMLDREGELKSA GDS PPG AV RPNGDEHSTLFSFLME
Sbjct: 13 PKEATCDVECAMKVEEIRIMSKKRKQSQRVGXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXPSPADQLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKPRX------------------------------------AAXXXXXXXXXXDLKDFSPGRGRDAETPGCGSSCDCVDTSNLSGGSGVXXXXXXXXXXXGSGEAARSKSTTGFAQTANRDEGAEGSGGGAKASAQLAGGGTEAVGGAQRLQLPGEAA-GEVVNGALLLSHLELLAKGIDMQVKFHNHLREVVESQQQLQAQLVRQQGTEHLPKHPAEFSGXXXXXXXXXXXXRAFPXXXXXXXXXTTASAVGVCPPSDLQYAGSNVGAEANNRAPKEVHLVGGGCGSGVSTAGCSSTLSDSSSLVWSRGGEDRPAGSPKEAEQGGKDAAPAERPRRRERPCALNYEGASQLEAAAAADVSMDAARATASKARQSVADHIRGDGTGEHLGDAQQQQQFDPAAMREAFSVQAGAGRVGPSHSQGLSGRQGAGLAAPQRYVPGDYTLTPKAPKNGGAGRVAPQPRGQPAVLGAELLGGEGALGAHKAIFAARSPAEARAALAAAALAPVTSTDNASNGQETLTLQRHMQAQMSMQQSMLSACNDQATNFDRRGWCGGGGXXXXXXXXXXGGXXXXXXXXVATPAFGEAGGGALRGGSGVGKEGSGNGHGAGADLGNNKEQQRLDSLSLQPSDAGDPSAMMGLLHQDDMFDFGMLDREGELKSAPGDSTPPGSAVARPNGDEHSTLFSFLME 826
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A835YR85_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR85_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.830e-20 Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 592 RFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 789
RFVW LH FV A+FDVGLK ASP++LL+MMP GLT+EH+KSHLQK+RLHR +SREEFL +
Sbjct: 1 RFVWPDALHAAFVTAIFDVGLKLASPRVLLDMMPDPQGLTTEHVKSHLQKFRLHRDKSREEFLTKH 66
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A6S6I5N2_9STRA (Phosphorus starvation response 1 n=1 Tax=Nannochloropsis oceanica TaxID=145522 RepID=A0A6S6I5N2_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.520e-19 Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 568 SKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 789
+ ++ +R+RFVW LH+DFVAA+FDVGLKCASPK +LEMM LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct: 70 NNNSKARKRFVWPDDLHRDFVAAIFDVGLKCASPKTILEMMNNTKDLTPDHIKSHLQKYRLHRERAREEFLQHF 143
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: W7U4E9_9STRA (Two-component response regulator arr12 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U4E9_9STRA) HSP 1 Score: 103 bits (257), Expect = 1.730e-19 Identity = 47/74 (63.51%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 568 SKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 789
S+ + +++RFVW LH+DFVAA+FDVGLKCASPK ++EMM LT +HIKSHLQKYRLHR+R+REEFL+ +
Sbjct: 49 SESSKAKKRFVWPDDLHRDFVAAIFDVGLKCASPKTIMEMMSNTKELTPDHIKSHLQKYRLHRERAREEFLQHF 122
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A7S3QDX4_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDX4_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 6.560e-17 Identity = 46/77 (59.74%), Postives = 57/77 (74.03%), Query Frame = 1
Query: 562 KDSKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 792
+ D RRF W LH+DFV+AVFDVGLK +SP LLE MP + +TSE IKSHLQKYRLHRQ+S++EF+ SY+
Sbjct: 149 RGGSDGRWSRRFAWPDELHRDFVSAVFDVGLKHSSPSALLEQMPKHEDITSERIKSHLQKYRLHRQKSKKEFMSSYD 225
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A7S3LD31_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LD31_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.840e-16 Identity = 43/79 (54.43%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 562 KDSKDAASR--RRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 792
+ +KD R +RF W LH+DFVAA+FDVGLK +SP +LE MP + +TSE +KSHLQKYR+HR +S++EF+ SY+
Sbjct: 73 RKAKDTDPRWSKRFTWPDDLHRDFVAAIFDVGLKHSSPSTILEHMPKHEQITSERVKSHLQKYRIHRIKSKKEFMSSYD 151
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A7S2YNK9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YNK9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.150e-15 Identity = 42/76 (55.26%), Postives = 56/76 (73.68%), Query Frame = 1
Query: 562 KDSKDAASRRRFVWSVPLHQDFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSY 789
K + D +RF W LH+DFV+A+FDVGLK +SP LLE MP + +T+E IKSHLQKYRLHR +S++EF+ +Y
Sbjct: 184 KSNNDGRWSKRFTWPEELHRDFVSAIFDVGLKHSSPSTLLEQMPKHEQITTERIKSHLQKYRLHRVKSKQEFMHTY 259
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: A0A4D9DAJ4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAJ4_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.790e-15 Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query: 610 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 792
P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct: 287 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 348
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Match: W7TSM2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSM2_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.400e-14 Identity = 41/62 (66.13%), Postives = 54/62 (87.10%), Query Frame = 1
Query: 610 PLHQ-DFVAAVFDVGLKCASPKLLLEMMPVVDGLTSEHIKSHLQKYRLHRQRSREEFLKSYN 792
P H+ DFV AVF +GL+C+SPK+L+++MP+ D LT+EHIKSHLQKYRLH QRS+EEF++ YN
Sbjct: 316 PQHETDFVGAVFKLGLQCSSPKVLMDLMPMTDTLTTEHIKSHLQKYRLHGQRSKEEFVEYYN 377 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1262.2168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1262.2168.1 >prot_Ecto-sp13_S_contig1262.2168.1 ID=prot_Ecto-sp13_S_contig1262.2168.1|Name=mRNA_Ecto-sp13_S_contig1262.2168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=835bp MKVEEIRIMSKKRKQSQRVGGNGALASKGGANNSAKAAKRPLSNSNGCGAback to top mRNA from alignment at Ecto-sp13_S_contig1262:13432..16191+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1262.2168.1 ID=mRNA_Ecto-sp13_S_contig1262.2168.1|Name=mRNA_Ecto-sp13_S_contig1262.2168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2760bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:13432..16191+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1262:13432..16191+ >mRNA_Ecto-sp13_S_contig1262.2168.1 ID=mRNA_Ecto-sp13_S_contig1262.2168.1|Name=mRNA_Ecto-sp13_S_contig1262.2168.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2505bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:13432..16191+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |