mRNA_Ecto-sp13_S_contig1262.2165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1262.2165.1
Unique NamemRNA_Ecto-sp13_S_contig1262.2165.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: D7G8T6_ECTSI (UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T6_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.920e-29
Identity = 58/61 (95.08%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAERKRAKIASPVHSNGISAATK 183
            WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAE KRAK ASPV SNGISAATK
Sbjct:  215 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAEEKRAKNASPVRSNGISAATK 275
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: T0R540_SAPDV (dTDP-glucose 4,6-dehydratase n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R540_SAPDV)

HSP 1 Score: 58.2 bits (139), Expect = 1.200e-9
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAER 126
            WEP VALE GL +TIEYF  LDMR ++KPT H AHK+S+ ++
Sbjct:   43 WEPRVALEAGLMQTIEYFRGLDMRYYRKPTPHTAHKSSDKDK 84
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A7S3MFT3_9STRA (UDP-glucuronate decarboxylase n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MFT3_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.830e-9
Identity = 29/47 (61.70%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAERKRAKI 141
            WEP V L EGL KTI YF  LD+R FKKPT H AHK +E E K  K+
Sbjct:  128 WEPKVQLREGLKKTIFYFKALDLRQFKKPTNHTAHKTTEGEGKVDKL 174
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A7S2QHR9_9DINO (UDP-glucuronate decarboxylase n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QHR9_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 3.480e-9
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAE 123
            WEP   L EGL KTI YF  LDMR +KKPT H AHKN+E +
Sbjct:  149 WEPTTELREGLTKTIAYFRSLDMRKYKKPTPHTAHKNTEGD 189
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A517YY08_9BACT (UDP-glucuronate decarboxylase n=3 Tax=Planctomycetes TaxID=203682 RepID=A0A517YY08_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 4.540e-9
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAE 123
            WEP V L EGL KTI+YF+ LD+R ++KPT H AHKNS+ +
Sbjct:  293 WEPKVPLSEGLQKTIDYFASLDLRKYRKPTDHTAHKNSQTQ 333
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A7X0LKS5_9BACT (UDP-glucuronate decarboxylase n=1 Tax=Algisphaera agarilytica TaxID=1385975 RepID=A0A7X0LKS5_9BACT)

HSP 1 Score: 59.7 bits (143), Expect = 6.340e-9
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNS 114
            WEP V L EGLAKTIE+F  +D+ +F+KPT HDAHKNS
Sbjct:  300 WEPKVPLAEGLAKTIEFFRSVDLDSFRKPTDHDAHKNS 337
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A1V9YXQ4_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YXQ4_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-8
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAER 126
            WEP + LE GL KTIEYF  LDMR ++KPT H AH++S  +R
Sbjct:   24 WEPLIELEAGLMKTIEYFKALDMRFYRKPTPHTAHRSSYLDR 65
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A1V9YS35_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YS35_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.050e-8
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNS 114
            WEP V LE GL  TIEYF  LDMR ++KPT H AHK+S
Sbjct:   32 WEPRVELEIGLQNTIEYFKSLDMRFYRKPTPHTAHKSS 69
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A7S3TJE7_9SPIT (UDP-glucuronate decarboxylase n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TJE7_9SPIT)

HSP 1 Score: 57.4 bits (137), Expect = 4.200e-8
Identity = 24/41 (58.54%), Postives = 30/41 (73.17%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAE 123
            WEP + L EGL KTIEYF  LD+R +KKPT H AH+ +E +
Sbjct:  293 WEPKIQLREGLTKTIEYFRALDLRKYKKPTPHTAHRTTEED 333
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BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Match: A0A7C6DMP2_9BACT (UDP-glucuronate decarboxylase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C6DMP2_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 5.710e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    1 WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHK 108
            WEP V L+EGL +TIEYF  +D+R+F+KPT H AHK
Sbjct:  293 WEPKVPLKEGLIRTIEYFKSIDLRHFRKPTNHTAHK 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1262.2165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7G8T6_ECTSI1.920e-2995.08UDP-glucuronate decarboxylase n=1 Tax=Ectocarpus s... [more]
T0R540_SAPDV1.200e-961.90dTDP-glucose 4,6-dehydratase n=1 Tax=Saprolegnia d... [more]
A0A7S3MFT3_9STRA1.830e-961.70UDP-glucuronate decarboxylase n=2 Tax=Spumella elo... [more]
A0A7S2QHR9_9DINO3.480e-963.41UDP-glucuronate decarboxylase n=2 Tax=Brandtodiniu... [more]
A0A517YY08_9BACT4.540e-960.98UDP-glucuronate decarboxylase n=3 Tax=Planctomycet... [more]
A0A7X0LKS5_9BACT6.340e-968.42UDP-glucuronate decarboxylase n=1 Tax=Algisphaera ... [more]
A0A1V9YXQ4_9STRA1.190e-859.52Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9YS35_9STRA2.050e-865.79Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S3TJE7_9SPIT4.200e-858.54UDP-glucuronate decarboxylase n=1 Tax=Strombidinop... [more]
A0A7C6DMP2_9BACT5.710e-863.89UDP-glucuronate decarboxylase n=1 Tax=Phycisphaera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1262contigEcto-sp13_S_contig1262:3..906 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score116.3
Seed ortholog evalue5e-24
Seed eggNOG ortholog2880.D7G8T6
Model size186
KEGG rclassRC00402,RC00508
KEGG koko:K01710,ko:K08678
KEGG ReactionR01384,R06513
KEGG Pathwayko00520,ko00521,ko00523,ko00525,ko01055,ko01100,ko01130,map00520,map00521,map00523,map00525,map01055,map01100,map01130
KEGG ModuleM00361,M00793
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.UDP-glucuronate decarboxylase activity
EggNOG OGsCOG0451@1,KOG1429@2759
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-12_002350.1
EC4.1.1.35,4.2.1.46
Cds size186
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.521531-CDS-Ecto-sp13_S_contig1262:2..581681462673.521531-CDS-Ecto-sp13_S_contig1262:2..58Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1262 3..58 +
1681462673.5355587-CDS-Ecto-sp13_S_contig1262:776..9061681462673.5355587-CDS-Ecto-sp13_S_contig1262:776..906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1262 777..906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1262.2165.1prot_Ecto-sp13_S_contig1262.2165.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1262 3..906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1262.2165.1

>prot_Ecto-sp13_S_contig1262.2165.1 ID=prot_Ecto-sp13_S_contig1262.2165.1|Name=mRNA_Ecto-sp13_S_contig1262.2165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
WEPNVALEEGLAKTIEYFSKLDMRNFKKPTTHDAHKNSEAERKRAKIASP
VHSNGISAATK*
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mRNA from alignment at Ecto-sp13_S_contig1262:3..906+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1262.2165.1 ID=mRNA_Ecto-sp13_S_contig1262.2165.1|Name=mRNA_Ecto-sp13_S_contig1262.2165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=904bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:3..906+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGAGCCAAACGTGGCCCTCGAGGAGGGCCTGGCCAAGACCATCGAATA
CTTCAGGTATACCTTACGATACGAGTGCCTGTAGCTATTCGCTGTTGAGG
TAGCAAGGGTTTGCACATTGCGTGTGGGCGTGTTTCGTCGTGTACGCATG
GGGGCTGTTTTTTGTATGGTGTTGGAAGATGCTTGGCCTGGCGTAGGCCA
CTCAGTTTCAGACGCCCGACATATGCTGGTCCGTGGTTTTCGCACGCTGT
TGCTTGGTTATGCCCGGGCTCGGTCCATCAAAGCGGCGACGACTCTCTCG
ACCTTCTAGTGCTGAGCTAGCTGTCTGACGTGGCGGTGTGTCCATGTATC
GTGTTGGTGTTGTTCGCTGCTGTGTGGGGGCATTCGTACTTGACGTGAAC
AATAAATACACCATGTGGACACCTCGTTGGTGTATTCAGTTCGCAAACGG
TGTGTTGTGGAAGTACGGTGGGGGGCCCTCAGTAGTGCCGGTATGGGCCA
AACCAGCATACAGGCACTGTTCAGAGTCCGGAATGACTCGGTTATTTTAT
GCCCTCCGTGTGAGCCGAAAACACTGCACCATACCGGGCACCGGCAATTT
CCAAACGGCACTTCTGAGGGGCCCCCACTGTAGCTAATACGTGCCTCCCA
CGTGCTTGCGCGAGCACCGCAGGATTTATGAAAGTTTCTCCCCCGTCACG
TCCCGCGCCGCTTTCTTTTCTCGTTGACAAATGCAATGGAACGCTCCGCT
CCTGCCCCCGGCGACAAACTCCAGCAAACTGGACATGAGGAATTTCAAGA
AGCCTACCACCCACGACGCGCACAAGAACTCGGAGGCAGAAAGGAAGAGG
GCCAAGATCGCCTCGCCGGTCCACTCCAACGGAATCTCGGCGGCAACAAA
GTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1262:3..906+

>mRNA_Ecto-sp13_S_contig1262.2165.1 ID=mRNA_Ecto-sp13_S_contig1262.2165.1|Name=mRNA_Ecto-sp13_S_contig1262.2165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:3..906+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGGAGCCAAACGTGGCCCTCGAGGAGGGCCTGGCCAAGACCATCGAATA
CTTCAGCAAACTGGACATGAGGAATTTCAAGAAGCCTACCACCCACGACG
CGCACAAGAACTCGGAGGCAGAAAGGAAGAGGGCCAAGATCGCCTCGCCG
GTCCACTCCAACGGAATCTCGGCGGCAACAAAGTAG
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