mRNA_Ecto-sp13_S_contig9996.21641.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9996.21641.1
Unique NamemRNA_Ecto-sp13_S_contig9996.21641.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9996.21641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9996contigEcto-sp13_S_contig9996:3061..5250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size260
Hectar predicted targeting categoryother localisation
Exons3
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464258.7461267-CDS-Ecto-sp13_S_contig9996:3060..31381681464258.7461267-CDS-Ecto-sp13_S_contig9996:3060..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9996 3061..3138 +
1681464258.7587574-CDS-Ecto-sp13_S_contig9996:4663..47631681464258.7587574-CDS-Ecto-sp13_S_contig9996:4663..4763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9996 4664..4763 +
1681464258.7702458-CDS-Ecto-sp13_S_contig9996:5170..51871681464258.7702458-CDS-Ecto-sp13_S_contig9996:5170..5187Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9996 5171..5187 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464258.7813373-UTR-Ecto-sp13_S_contig9996:5187..52501681464258.7813373-UTR-Ecto-sp13_S_contig9996:5187..5250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9996 5188..5250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9996.21641.1prot_Ecto-sp13_S_contig9996.21641.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9996 3061..5187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9996.21641.1

>prot_Ecto-sp13_S_contig9996.21641.1 ID=prot_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=65bp
PAKGEGLNSWRERIRLEQGTKQQTLKETNQALCPNTWLQHQPTWLPFSCI
GRVDEGHYASPPAV*
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mRNA from alignment at Ecto-sp13_S_contig9996:3061..5250+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9996.21641.1 ID=mRNA_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2190bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9996:3061..5250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGAAGGGCGAAGGACTAAACTCGTGGAGGGAACGAATAAGGCTCGA
ACAGGGCACGAAACAGCAGACGCTCAAGGTAAACGAAATGGAGGAGGACG
CTCCCGTACCTCCCCCTTCTACCCCTCCGGCCTTGCTACCACAGCAGCAG
GTGGAAGGCGAGGATACGGTCTGTCCTGTGCATGACACGATCCCCTCAGG
ATGCAGCAGCAATGGCTAGAGAAGCGTTGCGATGAGAAGTTGATGTCAAA
ATGGAATGTGGGAAGTCGACTAATGTAATGGCCAATCACGCAATGCTGCC
CGTGTGCGCGCTGAGGCACACCGAGGACATGGACGTCCAGCGGAATAAGC
TAGCCTTGCCTCCGTTTTCGAAGGCGTACTACACCAACGTCAGAAGTGTT
TTATGCAAGGCCTACCTCGTAGATTCCCAGAGCATCCTTTTCCTCTTTGT
CTCTCTGTACTGCTGTGTGTTGCACAAGGCCAGTGTGTACTCCTTCGGTG
CCCCTGTTTACAAACGTGTCACCACACGGACCGCACGAACACATGCACTA
TCCTTATTTTTTGTCTTGAAAAAGGTATCGAAGCTCTCCCAGAAGAAGTA
TGCTCTCGTTATTGAAGAAAACACTTCCAATGACTAGCACACGTGGGAAA
GGAAAACAATATACAAATGTAGAAAAAGGACACTCCCGCGACCTTCCTCC
TGCCTAGGCCTATTCCCTACTCCACCGGTTGGTGAGAAGTCAGGCCATCG
TGGTCGAGGTTGGGTGGTACTGTACTGTACTGTACTGTACTGTACCATGG
GTGGTACTGTTTTCCTGCGACCTCCGGCTGACGTGCATCTAACGGCGTGT
AGATTGCCGCCAGTATACATTGAGCACCAGCCACAATGCAAGGGGGGCAG
AAACGAACACGAGCACAAAGCTGCAGCCAAGGTGGAACCTTGCGGTTTGT
TTCTTTTGCTCCTGTACCGTTTCTGTCTTTTATATCCGGATAGGAGCAGC
TAAGCCCTCGCCATGACGCCTTCCCAGGTCATTTTCGGAAGCATGTTCTG
GTTTTTGCCGCACTGAGAGTGACATATTTTCGTTGGTCAGCCACTTTTTG
CGATACCACTATCAATAAAGACATCGAAAAGCACCAACAACAGCTACCCC
GCAAGAATAAGCCACAAACGGTGCCTAGAAATGTGGCGGAGGTTTGGTTT
GGATCCAGAGTTGAGGAGTTTTATGTTGCAGTGGCACCTTTCCATGTGAG
AGCCCCATTAATAGATCTGAACGTGCCGACGCACCCGCCGCTGGTCCATG
ATGTCCTTTTCCGGCTTAGCGCCTGAGATAGAAGTTAACGTTGTGTGAAA
CGAAATGCCGCCTTTGAACTCTCCGATTGGATTTACGTATAATCCGATAC
CGCCCTTTTCCGCACCCGCCTAATTATTGTCCTAGGAGGGTGGCGAGAAT
AGAGGCACGAAATTGGCCGTATGGCCGAGTGGTCAGAGAAACATGGTTTA
CTTGCTTGTGCCGCAAGTAGGTCGCGCGCACACACTTCGGGGAAATCTGT
GGGTTGAGTTGTCCTTCTTCATGACACACAAACTACCGATGTATTCATTG
CAGGAGACAAACCAAGCTCTATGCCCAAATACTTGGCTGCAGCACCAGCC
GACTTGGCTGCCATTTTCGTGTATCGGACGCGTCGATGAGGGACATTATG
CATGTGGGTTTACTCTCATGCGCTGCCTAAACTTCATCTGCTGCTGTCGG
TGCAGAAGCTTGGGTCAACTGTTTATCGTATGGTGTACACACGAGCCTGC
TGTAGGTTAACGTAGCGCACTGTACATGTTACCGCATCAACAAGAGAAAC
CCAATGTTCAAAGGTCGCACGCGCTTACTGAATGGATTTGATTGTCGTTT
CGAACACCCCGGAGCCATGTGTGTGTCCGTATTGAATTTCACACATTCCG
TTGCTTGGAAACTCTCAGACATTTGAACACCTTGGAATACCTCCTACGAC
GTGCTGCCAGTTTATTGCATTTTAGCTTGTACTTTTCTGCGTTTCCATCC
AGTCGTCACGTCTGGCACCTACATGTATGCATATCCCGCAATCTCTGCCT
CGCTTTGCAGCCCCCCCCGCAGTTTGAAATGGCGTCTGAGGATCGTGCGG
CACTGGTGGCCCTGTTTCGCTCCACCGGCGGTATTCGTTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9996:3061..5250+

>mRNA_Ecto-sp13_S_contig9996.21641.1 ID=mRNA_Ecto-sp13_S_contig9996.21641.1|Name=mRNA_Ecto-sp13_S_contig9996.21641.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9996:3061..5250+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCGGCGAAGGGCGAAGGACTAAACTCGTGGAGGGAACGAATAAGGCTCGA
ACAGGGCACGAAACAGCAGACGCTCAAGGAGACAAACCAAGCTCTATGCC
CAAATACTTGGCTGCAGCACCAGCCGACTTGGCTGCCATTTTCGTGTATC
GGACGCGTCGATGAGGGACATTATGCATCCCCCCCCGCAGTTTGA
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