mRNA_Ecto-sp13_S_contig9990.21637.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9990.21637.1
Unique NamemRNA_Ecto-sp13_S_contig9990.21637.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: D7FLX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLX1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 2.140e-33
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQV 174
            ERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQ+
Sbjct:   73 ERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQL 130          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A835ZE95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE95_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.270e-29
Identity = 53/88 (60.23%), Postives = 68/88 (77.27%), Query Frame = 1
Query:    4 RRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNLGQI 267
            RRV HEAAHFL+GYLCGLPIKSY  DG TT +EF+D+AEGD +    + T  E+D VS+VA++GAV E   +G+ATG A DLD+LG++
Sbjct:   76 RRVHHEAAHFLAGYLCGLPIKSYTVDGATTQIEFFDTAEGDQAVIGRQLTRPEIDPVSVVALAGAVAEVKKFGSATGSAQDLDSLGRL 163          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S2V1Y0_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1Y0_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.690e-22
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGD--MSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNL 258
            ERRVRHEAAHFL GYL G PIKSYKA G T  VEFYDS +GD  ++    + T E+V  +++++M+G  GE L YG A GG +DL++L
Sbjct:  239 ERRVRHEAAHFLVGYLLGYPIKSYKASGSTNEVEFYDSVDGDDYIANPGAQLTKEQVAPLAVISMAGIAGECLKYGDAKGGQADLNDL 326          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S4HX10_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX10_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.920e-22
Identity = 50/84 (59.52%), Postives = 61/84 (72.62%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDL 249
            +R  RHEA HFL GYLCGLP+K Y   D G   VEF+ SAEG+  GR  +FT EE+  +S+VAMSG+V E LS+G ATGGA+DL
Sbjct:  148 DRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALSVVAMSGSVAEVLSFGQATGGATDL 229          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7R9VLF5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VLF5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.980e-21
Identity = 50/87 (57.47%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNL 258
            +R  RHEA HFL GYLCGLP+K+Y   D G   VEF+ SAEG+ SGR  +FT EE+  +S+VAMSG+V E LS+G A GG +DL  L
Sbjct:  108 DRICRHEAGHFLCGYLCGLPVKAYSIGDTGFPCVEFHPSAEGEASGR--EFTSEEIAALSVVAMSGSVAEVLSFGQAKGGENDLLEL 192          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S4MBA1_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MBA1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.320e-19
Identity = 49/87 (56.32%), Postives = 60/87 (68.97%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNL 258
            +R  RHEA HFL GYLCGLP+K Y   D G   VEF+ SAEG+  GR  +FT EE+  +S+VAMSG+V E LS+G A GG +DL  L
Sbjct:  260 DRICRHEAGHFLCGYLCGLPVKQYSIVDTGFPCVEFHPSAEGEALGR--EFTSEEIAALSVVAMSGSVAEVLSFGQARGGENDLLEL 344          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S3V807_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V807_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.910e-19
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYKA-DGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNL 258
            +R  RHEA HFL GYLCGLPIKSY+A D G   VEFY + +G+ +GR ++   +E+  +S+VAMSG+V E L +G A GG+SDL  L
Sbjct:  266 DRICRHEAGHFLCGYLCGLPIKSYQANDSGIPCVEFYPTTDGNFAGRELE--EQEICAMSVVAMSGSVAEVLEFGEAKGGSSDLIQL 350          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S1JCN1_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1JCN1_9EUGL)

HSP 1 Score: 89.4 bits (220), Expect = 6.830e-19
Identity = 43/88 (48.86%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    4 RRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNLGQI 267
            RRVRHEAAHFL GYL GLP+  Y+ +  T+ VEF+ +  G++     + T  E+D++S++A+SGAVGEAL++  ATGG  DL  L ++
Sbjct:  351 RRVRHEAAHFLVGYLLGLPVAGYEVETNTSCVEFHPTTNGEIVPN-QRLTKAEIDKLSVIALSGAVGEALTFSNATGGGQDLQLLQRL 437          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S1GME8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GME8_CYCTE)

HSP 1 Score: 87.8 bits (216), Expect = 1.540e-18
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYKA-DGGTTLVEFYDSAEGDMSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNLGQI 267
            +R  RHEA HFL GYLCGLP+KSY   D G   VEFY S EG  +G+  K T  E+  +S+VAMSG+V E + +G A GG +DL  L  I
Sbjct:  240 DRICRHEAGHFLCGYLCGLPVKSYSLLDSGIPCVEFYPSQEGGSAGK--KLTQGEIAALSVVAMSGSVAEVIGFGNAKGGENDLIELESI 327          
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Match: A0A7S4T327_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T327_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.560e-18
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 ERRVRHEAAHFLSGYLCGLPIKSYK-ADGGTTLVEFYDSAEGD-MSGRAMKFTPEEVDQVSIVAMSGAVGEALSYGTATGGASDL---DNL 258
            +R  RHEA HFL GYL GLP+K Y  AD G   VEF+ S EGD +SGR   F  EE+  +S+VAMSG+V EA++ G A GG +DL   DNL
Sbjct:   31 DRVCRHEAGHFLCGYLAGLPVKGYSIADNGYPCVEFHPSPEGDSISGRG--FNEEEIAALSVVAMSGSVAEAMALGKARGGENDLLELDNL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9990.21637.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLX1_ECTSI2.140e-3398.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZE95_9STRA1.270e-2960.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V1Y0_9STRA1.690e-2255.68Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A7S4HX10_9STRA4.920e-2259.52Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7R9VLF5_9STRA1.980e-2157.47Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S4MBA1_9STRA1.320e-1956.32Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3V807_9STRA1.910e-1954.02Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S1JCN1_9EUGL6.830e-1948.86Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1GME8_CYCTE1.540e-1852.22Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S4T327_9STRA1.560e-1854.95Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9990contigEcto-sp13_S_contig9990:10..1061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.2
Seed ortholog evalue6.8e-14
Seed eggNOG ortholog55529.EKX50231
Model size267
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28PSE@1,2QWEW@2759
Cds size267
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464258.4271207-CDS-Ecto-sp13_S_contig9990:9..1801681464258.4271207-CDS-Ecto-sp13_S_contig9990:9..180Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9990 10..180 +
1681464258.4396474-CDS-Ecto-sp13_S_contig9990:965..10611681464258.4396474-CDS-Ecto-sp13_S_contig9990:965..1061Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9990 966..1061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9990.21637.1prot_Ecto-sp13_S_contig9990.21637.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9990 10..1061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9990.21637.1

>prot_Ecto-sp13_S_contig9990.21637.1 ID=prot_Ecto-sp13_S_contig9990.21637.1|Name=mRNA_Ecto-sp13_S_contig9990.21637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
ERRVRHEAAHFLSGYLCGLPIKSYKADGGTTLVEFYDSAEGDMSGRAMKF
TPEEVDQVSIVAMSGAVGEALSYGTATGGASDLDNLGQI
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mRNA from alignment at Ecto-sp13_S_contig9990:10..1061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9990.21637.1 ID=mRNA_Ecto-sp13_S_contig9990.21637.1|Name=mRNA_Ecto-sp13_S_contig9990.21637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1052bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9990:10..1061+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGACGCGTGCGCCACGAGGCCGCCCACTTCCTGTCGGGCTACCTTTG CGGCTTGCCCATCAAGAGCTACAAGGCCGACGGGGGGACCACACTCGTGG AGTTCTACGACTCGGCGGAGGGGGACATGTCCGGGCGGGCGATGAAGTTT ACCCCAGAGGAGGTTGACCAGGTCAGCTCTTGTTTTTGTTGGTGTTGTTT GCGGTGTTGGTATTGGTGTTGATGTTGGTATTAGTGTTGGTGTTTTGTTG TTGTTGTTGTTGTGTTAGTGGTGGTGGTGGTGGTAGTGGTGGGTGGTGTT GGTGATGTTACGGTTGTGGTTGTGTTGTTGTTGTTGTCGTTGGTGGGAGT AGTGGTGTGGTTGTGGTGGTGGCTGTTGCCGTTGTTTGGTGTTGTCGTCG TCGCTGGTCGCGTTTTTGCCGTTGTGAAGGCGCAACGACTCCCTCCCGCC CTTTGCAATCGACGTGCCTCCCGCGGCGTGGCCTGTAGGTGGGACCCCCC CCACCCCCCGCCCCCGTCTTTTCCAACTAGTGAGCACGGCGACCCCGCAC GTCCTTGCTGACCGTGAAAGTAGATCTGGCGACCAAAGTAGTTCAAAACT TGCCTACGCGCACTGCCACACGGCCGGTTTGCTGGCGATACTTGGCATGT TTGGCGCGTGTCTTGTAGAACCTAGCTCGTGAGACTTGAGTGTAGTAGTC CCAACTACCCGCAGCAGGAGTTGATGTTGCCCTGCCGTCTTCGCAGATTT TAGGTTGTTTTTATCTCCCGATCGATCGATGATGGCTTGGCTGCAACGTT CCACACCGCACTAGCTGCAGTGAAGGTCTTTCTAGCCTTCGGCGATACTT TTCTGTTTTTGCACATGATGCCCTCCTATACTGGGCGATTTTAGCTACCT GGACGCTCTGGTGGGTTGATCGTCGAAAACCTTGTTTTTGTAAACGCCGA CAACAGGTTTCCATCGTGGCGATGTCCGGGGCGGTAGGGGAGGCTCTTTC GTACGGCACCGCCACTGGGGGGGCCTCAGACCTCGACAACCTTGGCCAGA TC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9990:10..1061+

>mRNA_Ecto-sp13_S_contig9990.21637.1 ID=mRNA_Ecto-sp13_S_contig9990.21637.1|Name=mRNA_Ecto-sp13_S_contig9990.21637.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9990:10..1061+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGCGACGCGTGCGCCACGAGGCCGCCCACTTCCTGTCGGGCTACCTTTG
CGGCTTGCCCATCAAGAGCTACAAGGCCGACGGGGGGACCACACTCGTGG
AGTTCTACGACTCGGCGGAGGGGGACATGTCCGGGCGGGCGATGAAGTTT
ACCCCAGAGGAGGTTGACCAGGTTTCCATCGTGGCGATGTCCGGGGCGGT
AGGGGAGGCTCTTTCGTACGGCACCGCCACTGGGGGGGCCTCAGACCTCG
ACAACCTTGGCCAGATC
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