mRNA_Ecto-sp13_S_contig999.21636.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig999.21636.1
Unique NamemRNA_Ecto-sp13_S_contig999.21636.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: D7FX72_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX72_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.420e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S IDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS
Sbjct:  108 SPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 147          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A6H5L1H9_9PHAE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1H9_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 4.890e-13
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S IDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS
Sbjct:  212 SPIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 251          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A2Z7CY40_9LAMI (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CY40_9LAMI)

HSP 1 Score: 50.8 bits (120), Expect = 1.880e-6
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S +D+IPE L+G+ GLLDDL++V+  +LH+ S+YR VLLS
Sbjct:  141 SPVDIIPEGLLGVIGLLDDLIIVLICVLHVASLYRAVLLS 180          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A830B9J8_9LAMI (RING-type E3 ubiquitin transferase n=1 Tax=Phtheirospermum japonicum TaxID=374723 RepID=A0A830B9J8_9LAMI)

HSP 1 Score: 49.3 bits (116), Expect = 6.780e-6
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S +D+IPE LVG+ GLLDDL++V    LH+ ++YR VLLS
Sbjct:  136 SPVDIIPEGLVGVFGLLDDLIIVFICFLHVAALYRAVLLS 175          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A7N0UW41_KALFE (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UW41_KALFE)

HSP 1 Score: 48.9 bits (115), Expect = 1.010e-5
Identity = 23/39 (58.97%), Postives = 32/39 (82.05%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLL 117
            S +D+IPE L G+ GLLDDL+VV+ + LH+ +VYR+VLL
Sbjct:  137 SPVDIIPEGLFGVVGLLDDLIVVLTVFLHVAAVYRSVLL 175          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A6A5PAC4_LUPAL (RING-type E3 ubiquitin transferase n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5PAC4_LUPAL)

HSP 1 Score: 46.6 bits (109), Expect = 1.050e-5
Identity = 21/38 (55.26%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 114
            S ID+IPE ++GI GLLDDL++V+   LH+ ++YR+VL
Sbjct:   22 SPIDIIPEGILGIVGLLDDLLIVLICFLHVATLYRSVL 59          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: UPI001CC346A4 (E3 ubiquitin-protein ligase RNF170-like isoform X1 n=2 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC346A4)

HSP 1 Score: 48.5 bits (114), Expect = 1.390e-5
Identity = 22/40 (55.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S ID+IPE +VG+ G+LDDLV+ +   LH+ ++YRT LLS
Sbjct:  141 SPIDIIPEGVVGLIGILDDLVIALIFFLHIAAMYRTALLS 180          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A1R3I8E8_9ROSI (RING-type E3 ubiquitin transferase n=1 Tax=Corchorus olitorius TaxID=93759 RepID=A0A1R3I8E8_9ROSI)

HSP 1 Score: 45.8 bits (107), Expect = 1.620e-5
Identity = 20/38 (52.63%), Postives = 31/38 (81.58%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVL 114
            S ID+IPE+++GI GLLDDL++ +   LH+ ++YR+VL
Sbjct:   10 SPIDIIPEAILGIVGLLDDLLIALVCFLHVAAIYRSVL 47          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: A0A8J5LDX6_ZINOF (E3 ubiquitin-protein ligase RNF170 n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5LDX6_ZINOF)

HSP 1 Score: 48.1 bits (113), Expect = 1.700e-5
Identity = 20/39 (51.28%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLL 117
            S +D+IPE + G+ GLLDDL++++ +LLH+ ++YR+VLL
Sbjct:  128 SPVDIIPEGIFGLVGLLDDLIILLIVLLHVATIYRSVLL 166          
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Match: UPI0020095D38 (E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Salvia TaxID=21880 RepID=UPI0020095D38)

HSP 1 Score: 48.1 bits (113), Expect = 1.860e-5
Identity = 23/40 (57.50%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS 120
            S +D+IPE+L+GI GLLDDL+VV    L++ ++YRTVL+S
Sbjct:  137 SPVDIIPEALLGIIGLLDDLIVVFMCFLYVAALYRTVLVS 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig999.21636.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX72_ECTSI2.420e-1397.50RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5L1H9_9PHAE4.890e-1397.50E3 ubiquitin-protein ligase RNF170 n=1 Tax=Ectocar... [more]
A0A2Z7CY40_9LAMI1.880e-657.50E3 ubiquitin-protein ligase RNF170 n=1 Tax=Dorcoce... [more]
A0A830B9J8_9LAMI6.780e-657.50RING-type E3 ubiquitin transferase n=1 Tax=Phtheir... [more]
A0A7N0UW41_KALFE1.010e-558.97E3 ubiquitin-protein ligase RNF170 n=1 Tax=Kalanch... [more]
A0A6A5PAC4_LUPAL1.050e-555.26RING-type E3 ubiquitin transferase n=1 Tax=Lupinus... [more]
UPI001CC346A41.390e-555.00E3 ubiquitin-protein ligase RNF170-like isoform X1... [more]
A0A1R3I8E8_9ROSI1.620e-552.63RING-type E3 ubiquitin transferase n=1 Tax=Corchor... [more]
A0A8J5LDX6_ZINOF1.700e-551.28E3 ubiquitin-protein ligase RNF170 n=1 Tax=Zingibe... [more]
UPI0020095D381.860e-557.50E3 ubiquitin-protein ligase RNF170-like n=3 Tax=Sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig999contigEcto-sp13_S_contig999:19817..19936 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score70.1
Seed ortholog evalue2.7e-10
Seed eggNOG ortholog2880.D7FX72
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ubiquitin-like protein transferase activity
EggNOG OGsKOG2164@1,KOG2164@2759
Cds size120
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464258.3937664-CDS-Ecto-sp13_S_contig999:19816..199361681464258.3937664-CDS-Ecto-sp13_S_contig999:19816..19936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig999 19817..19936 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig999.21636.1prot_Ecto-sp13_S_contig999.21636.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig999 19817..19936 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig999.21636.1

>prot_Ecto-sp13_S_contig999.21636.1 ID=prot_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
SQIDVIPESLVGIAGLLDDLVVVVFLLLHLTSVYRTVLLS
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mRNA from alignment at Ecto-sp13_S_contig999:19817..19936-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig999.21636.1 ID=mRNA_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:19817..19936- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGATCGACGTGATCCCCGAGAGCCTGGTCGGAATCGCGGGTCTCCT CGACGATCTGGTAGTCGTGGTCTTCCTGCTGCTCCACCTCACCTCCGTGT ACCGCACGGTTCTGCTCTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig999:19817..19936-

>mRNA_Ecto-sp13_S_contig999.21636.1 ID=mRNA_Ecto-sp13_S_contig999.21636.1|Name=mRNA_Ecto-sp13_S_contig999.21636.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:19817..19936- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCCAGATCGACGTGATCCCCGAGAGCCTGGTCGGAATCGCGGGTCTCCT
CGACGATCTGGTAGTCGTGGTCTTCCTGCTGCTCCACCTCACCTCCGTGT
ACCGCACGGTTCTGCTCTCC
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