prot_Ecto-sp13_S_contig999.21635.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig999.21635.1
Unique Name	prot_Ecto-sp13_S_contig999.21635.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	298

Homology

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 8.270e-49
Identity = 94/127 (74.02%), Postives = 99/127 (77.95%), Query Frame = 0

Query:  171 QLSGLWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            Q S LWHTLGQDQ  SMAARP              TLPVDL RLLD F+ L  LDL+ NPWEHPPEAIV GGVQAVRGYY+AMF GGTTAVTRPLKVVI+GKETVGKTSLRRSITTG PCMTQ+ GV
Sbjct:  461 QFSRLWHTLGQDQTGSMAARPG-------------TLPVDLARLLDRFDGLVTLDLSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGV 574

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 183 bits (464), Expect = 2.030e-48
Identity = 93/123 (75.61%), Postives = 98/123 (79.67%), Query Frame = 0

Query:  175 LWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            LWHTLGQDQ  SMAARP              TLPVDL RLLD F+ L+ LDL+ NPWEHPPEAIV GGVQAVRGYYEAMF GGTTAVTRPLKVVI+GKETVGKTSLRRSITTG PCMTQ+ GV
Sbjct:  372 LWHTLGQDQTGSMAARPG-------------TLPVDLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGV 481

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.260e-37
Identity = 78/122 (63.93%), Postives = 88/122 (72.13%), Query Frame = 0

Query:  175 LWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSG 296
            LWH LGQD+  SMAA P              TLPV L  LLD+ E +  L +A NPWE PP+AIV GG+ AVR Y+EA++MGGTTAVTRPLKVVIVGKETVGKTSLRRSI TGKPCMT+  G
Sbjct:  300 LWHALGQDETGSMAAGPG-------------TLPVPLACLLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPLKVVIVGKETVGKTSLRRSIKTGKPCMTRGGG 408

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KUH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUH8_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 3.990e-36
Identity = 73/104 (70.19%), Postives = 76/104 (73.08%), Query Frame = 0

Query:  175 LWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKT 278
            LWHTLGQDQ  SMAAR               TLPVDL RLLD  + L    +  NPWEHPPEAIVGGG+Q VRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKT
Sbjct:  174 LWHTLGQDQIGSMAARRG-------------TLPVDLARLLDMLDGLSSWKVGRNPWEHPPEAIVGGGLQVVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKT 264

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 9.110e-31
Identity = 68/95 (71.58%), Postives = 75/95 (78.95%), Query Frame = 0

Query:  206 TLPVDLDRLLDNFESLKF---LDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            TLPV L  LLD+F+ L     LDL+ NPWEHPPEAIV GG+ AVRGY+EA+F GGTT VTRPLKVVIVG ETVGKTSLR SI  GKPCMT+  GV
Sbjct:    7 TLPVALASLLDSFDRLHSVGGLDLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPLKVVIVGMETVGKTSLRCSIKAGKPCMTRGGGV 101

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5JQZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.390e-27
Identity = 63/95 (66.32%), Postives = 73/95 (76.84%), Query Frame = 0

Query:  206 TLPVDLDRLLDNFESLKF---LDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            TLPV L  LLD+F+ L     L+L+ NPWEHPPEAIV GG+ AVRGY+EA+F GGTT VTRPLKVVIVG ETVGKTS++     GKPCMT+  GV
Sbjct:  173 TLPVALASLLDSFDRLHSVGGLNLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPLKVVIVGTETVGKTSIK----AGKPCMTRGGGV 263

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KZA7_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 4.670e-21
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 0

Query:  244 QAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            +AVRGYYEAMFMGGTTAVT PLKVVIVGKETVGKTSLRRSITTGKPCMT+DSGV
Sbjct:   15 EAVRGYYEAMFMGGTTAVTPPLKVVIVGKETVGKTSLRRSITTGKPCMTRDSGV 68

[Close]

BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 2.450e-18
Identity = 165/303 (54.46%), Postives = 193/303 (63.70%), Query Frame = 0

Query:    1 MASTNRDALVALFRSTGGAGWTRRDNWDTHAA--IGTW-----PHLGALEELILSSNKLDGPIPKELGDLTELKDITLFENNLTGPILPELRNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLSGLWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLK--FLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQD 294
            MA T+R AL ALFRSTGG  W R+DNWDT A   + TW      H G + +L L  N L GP+P ELG L ELK++ L                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX L+ LW      Q        D++            +P  L RLLD  +  +   L L  NPW  PPE+IV  G +++RGY+E ++          +KV++VG+E  GKTSLR+S+ T +   T D
Sbjct:    1 MADTDRGALKALFRSTGGVRWKRKDNWDTAADLHVATWLGVEVNHQGRVMKLSLDKNNLQGPMPAELGALAELKELWLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTALWDHTHYLQ--------DIVHEEGAHGMSGGRIPSQLCRLLDVLDRAEGGVLSLEDNPWAEPPESIVAKGPKSIRGYFEDLYAEPCRVERSSVKVILVGQEGAGKTSLRQSMKTNEATPTGD 295

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BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.070e-16
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 0

Query:    1 MASTNRDALVALFRSTGGAGWTRRDNWDTHAAIGTWPHL-----GALEELILSSNKLDGPIPKELGDLTELKDITL 71
            MAS +RDALVALF STGGAGWTRRDNW+T A   TW  +     G + ++ L SN L GPIPKELG L +L  + L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76

[Close]

BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 4.710e-16
Identity = 51/111 (45.95%), Postives = 66/111 (59.46%), Query Frame = 0

Query:  187 MAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV 297
            ++ARP V+ S+ V      TLPV L  LLD    ++ L LAHNPWE+PPEAI  GG+ AVR Y+EA+                 G+ETVGKTS++    TG+PCMT+  GV
Sbjct:   16 VSARPYVVPSVDVLLG---TLPVPLVCLLDTLARVRDLGLAHNPWEYPPEAIAAGGIPAVRRYFEAIXXXXXXXXXXXXXXXXXGEETVGKTSIK----TGRPCMTRGCGV 119

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FX69_ECTSI	8.270e-49	74.02	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FX56_ECTSI	2.030e-48	75.61	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
D7FJV1_ECTSI	4.260e-37	63.93	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5KUH8_9PHAE	3.990e-36	70.19	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRW5_9PHAE	9.110e-31	71.58	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQZ5_9PHAE	1.390e-27	66.32	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KZA7_9PHAE	4.670e-21	94.44	G domain-containing protein n=1 Tax=Ectocarpus sp....	[more]
D7FUC3_ECTSI	2.450e-18	54.46	LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s...	[more]
A0A6H5KQQ0_9PHAE	3.070e-16	57.89	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JSC0_9PHAE	4.710e-16	45.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 87..111 e-value: 45.0 score: 7.9 coord: 39..63 e-value: 34.0 score: 8.9 coord: 159..182 e-value: 0.75 score: 18.8
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 90..108 e-value: 0.98 score: 10.2
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10		coord: 30..238 e-value: 3.8E-45 score: 156.2
None	No IPR available	PANTHER	PTHR27000	FAMILY NOT NAMED	coord: 71..174 coord: 38..176
None	No IPR available	PANTHER	PTHR27000:SF617		coord: 71..174 coord: 38..176
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 34..233

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig999	contig	Ecto-sp13_S_contig999:7913..13128 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig999.21635.1	mRNA_Ecto-sp13_S_contig999.21635.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig999 3506..13142 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig999.21635.1 ID=prot_Ecto-sp13_S_contig999.21635.1|Name=mRNA_Ecto-sp13_S_contig999.21635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp
MASTNRDALVALFRSTGGAGWTRRDNWDTHAAIGTWPHLGALEELILSSN
KLDGPIPKELGDLTELKDITLFENNLTGPILPELRNLGALKTLDLGGNKL
IGPIPKQLGALTKLENLWLQNIALTGPIPPELRKLAALKALYLWNSQLSG
TIPKELGSLRQLRQLWISNNQLSGLWHTLGQDQASSMAARPDVIDSLFVS
RWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYY
EAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR001611	Leu-rich_rpt
IPR032675	LRR_dom_sf