mRNA_Ecto-sp13_S_contig999.21635.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI) HSP 1 Score: 584 bits (1505), Expect = 6.250e-184 Identity = 418/923 (45.29%), Postives = 495/923 (53.63%), Query Frame = 3 Query: 525 QLSGLWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*KALFTWMWKTTKSMVIQF----GYLILPVRLCTTDCSS---YFSPL----VPCTCWYGI--RGKAARWIA*TSKTLLLLPGYGT*LSVCPTQTWYLWETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPASVL*AVHHLASTS*QRRSVGEQTGPATRARRGFFIA*YSILSMTRG----LLPSIFRRAIKSPMRCLRSWHHPVGGFMDIAPPFALHICVF-------RRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHAGRLCRK--SPPS*SRCSRSSLVCHAS*CSSAHSTRPRACRS--GRQMKAMFVNSARTVRRVLTCWQLLFRWWNSLTISSSMIRSGSSLPRMPRR*LVRIVRYGLG*TTRLRFLVQPLAASV*AANQFEQPSAFPDQXXXXXXXXXXXXXXXXXXXXXXXPGYSKLSQYLHWVQATRCD*CLSRCLAV*FGFSRCGLAQM*NFNTWPKLGGF*SLDQKAALKV-RVPRFPRKIGFTRRFLVGSGASRSVSWGFAAKEDDDPRLWGVFLGVGMLLIGAD*VLIARESKLLCCKARVEVASAV 3206 Q S LWHTLGQDQ SMAARP TLPVDL RLLD F+ L LDL+ NPWEHPPEAIV GGVQAVRGYY+AMF GGTTAVTRPLKVVI+GKETVGKTSLRRSITTG PCMTQ+ GV ++T + ++ G+ P+R+ DC+ Y+ L P + + KA+ + L + P P L W R R T + + RW + + A H S+ + + A+ G ++ + T P +F R I P+ R+ M + P + L + + RRK EQRTRGITRADLE+KW AKVAELN A TPVAAPEAA+ GA+LIRKWEGGLV+YG+YVFLDV+WFATVLDPLFSH+RDS G IDLGGIRV N A +R RLD +HVFEP+ AEELW+PELA HLLLALKSAGLTFPLP DPNGGLVILLRMDTTRPPEYGIKLEQVHK SE DL+LTV CSFSLGLPPGFVERLLAR C +GYP+PFWRYGALIV +G K LFSLS+EYSEEDKILALEV+GGCEE HA K S L C H T+ R+ GR + S C QL + + ++ ++ +V + + +FL +PL EQ F + P S +S +QA AQ+ + N +V P S A +V FAAKEDDDPRLWGVFLGVGMLLIGA+ VLIARE KLLCCK RVE ASAV Sbjct: 461 QFSRLWHTLGQDQTGSMAARPG-------------TLPVDLARLLDRFDGLVTLDLSRNPWEHPPEAIVAGGVQAVRGYYDAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGV---------ESTVHVDVEDHKVDGH---PIRI--FDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPDANVILVGNKWDRVVR----------TRGT--------VADDVECESRRWLKSWMEKAHGHQP----HGLSLEDGVSLVSCAQSGLGVSAPAFGGGTGWPCDKSTPGLFHRMIYDPVDDKRTVT------MHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAKVAELNGAGTPVAAPEAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNLASLR--RLDNEHVFEPQLAEELWTPELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTTRPPEYGIKLEQVHKASEADLRLTVACSFSLGLPPGFVERLLARCCHMGYPFPFWRYGALIVGNGAEKG-LFSLSVEYSEEDKILALEVFGGCEEVHAWAALSKVLSVMIKMLSEFPGLPCELMFFCPQHKTKGMPIRTTDGRPGSCLVEES-------YFC-QLCQDREAGIDLLAAALQ---------------VVEF-----SDEKFLDEPLR---------EQ---FAENAEKVARQGCALWPGMNYEVEVSGPASSGISP---GIQAP---------------------AQIRSSNXXXXXXXXXXXXXXXXXXXXQVSGTPWYQDVKTLVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGAEFVLIAREHKLLCCKPRVEAASAV 1261
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 543 bits (1399), Expect = 1.850e-169 Identity = 394/953 (41.34%), Postives = 478/953 (50.16%), Query Frame = 3 Query: 537 LWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*KALFTWMWKTTKSMVIQF----GYLILPVRLCTTDCSS---YFSPL----VPCTCWYGI--RGKAARWIA*TSKTLLLLPGYGT*LSVCPTQTWYLWETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPASVL*AVHH----------LASTS*QRRSVGEQTGPATRARRGFFIA*YSILSMTRGLLPSIFRRAIKSPMRCLRSWHHPVGGFMDIAPPFALHICVF-------RRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHAGRLCRKSPPS*SRCSRSSLVCHAS*CSSAHSTRPRACRSGRQMKAMFVNSARTVRRVLTCWQLLFRWWNSLT-ISSSMIRSGSSLPRMPRR*LVRIVRYGLG*TTRLRFLVQPLAASV*AANQF----EQPSAFPDQXXXXXXXXXXXXXXXXXXXXXXXPGYSKLSQYLHWVQATRCD*CLSRCLAV*FGFSRCGLAQM*NFNTWPKLGGF*SLDQKAALKVRVPRFPRKIGFTR--------------------------RFLVGSG--ASRSVSWGFAAKEDDDPRLWGVFLGVGMLLIGAD*VLIARESKLLCCKARVEVASAV 3206 LWHTLGQDQ SMAARP TLPVDL RLLD F+ L+ LDL+ NPWEHPPEAIV GGVQAVRGYYEAMF GGTTAVTRPLKVVI+GKETVGKTSLRRSITTG PCMTQ+ GV ++T + ++ G+ P+R+ DC+ Y+ L P + + KA+ + L + P P L W R R T + + RW + + A H ++ S + +G + PA G+ P +F R I P+ R+ M + P + L + + RRK EQRTRGITRADLE+KW AKVAELN A TPVAAPEAA+ GA+LIRKWEGGLV+YG+YVFLDV+WFATVLDPLFSH+RDS G IDLGGIRV N A +R RLD +HVFEP+ AEELW+PELA HLLLALKSAGLTFPLP DPNGGLVILLRMDTTRPPEY I+ E+ ++ ++DL L+V CSFSLGLPPGFVERLLAR C LGYPYPFWRYGALIV +G K LFSLSL+YSE D +L +EV GG EE HA W +L+ + S MI+ S P +P + ++ +R P + + F + P+A P K ++ V +R G A + + G S D + + P + VG+ A +V FAAKEDDDPRLWGVFLGVGMLLIG + LIARE KLLCCK RV+ ASAV Sbjct: 372 LWHTLGQDQTGSMAARPG-------------TLPVDLARLLDVFDGLRSLDLSRNPWEHPPEAIVAGGVQAVRGYYEAMFKGGTTAVTRPLKVVIIGKETVGKTSLRRSITTGGPCMTQNGGV---------ESTVHVDVEDHKVDGH---PIRI--FDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPNANVILVGNKWDRVVR----------TRGT--------VADDVECESRRWLKSWMEKAHGHQPHGLSLEDGVSLVSCAQSCLGV-SAPAFGGGTGW---------PCDKSTPGLFHRMIYDPVDDKRTVT------MHLPPSYRLALEMLEELASSSRRKAEQRTRGITRADLEEKWHAKVAELNGAGTPVAAPEAAMPGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNLASLR--RLDNEHVFEPQLAEELWTPELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTTRPPEYSIRREEANQARKYDLTLSVACSFSLGLPPGFVERLLARCCHLGYPYPFWRYGALIVGNGAEKG-LFSLSLDYSEHDNMLKVEVLGGGEEVHA-------------------------------------------------------------------WAALSKVLSVMIKMLSEFPGLPCEPIFFCPQHKTK-GMPIRTTDAPPGSGLVEKGYFCPLCQDPTA-----GNNLLAAALQVVEFSDEEFFDEPLRQKFAENAEKV-------------------ARKGCASQQGSHFEGGVSGSTSSDISPSSRAPAPTRSSXXXXXXXXXXXXXXXXXSPTGQVSGTPWYQDVKTWVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGGEFFLIAREHKLLCCKPRVDAASAV 1168
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI) HSP 1 Score: 460 bits (1184), Expect = 3.850e-139 Identity = 362/921 (39.31%), Postives = 440/921 (47.77%), Query Frame = 3 Query: 537 LWHTLGQDQASSMAARPDVIDSLFVSRWWYCTLPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*KALFTWMWK-----------TTKSMVIQFGYLIL-----PVRLCTTDCSSYFS---------PLVPCTCWYGIRGKAARWIA*TSKTLLLLPGYGT*LSVCPTQTWYLWETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPASVL*AVHHLASTS*QRRSVGEQTG-PATRARRGFFIA*-YSILSMTRGL---LPSIFRRAIKSPMRCLRSWHHPVGGFMDIAPPFALHICVFRRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHAGRLCRK--SPPS*SRCSRSSLVCHAS*CSSAHSTRPRACRSGRQMKAMFVNSARTVRRVLTCWQLLFRWWNSLTISSSMIRSGSSLPRMPRR*LVRIVRYGLG*TTRLRFLVQPLAASV*AANQFEQPSAFPDQXXXXXXXXXXXXXXXXXXXXXXXPGYSKLSQYLHWVQATRCD*CLSRCLAV*FGFSRCGLAQM*NFNTWPKLGGF*SLDQKAALKVRVPRFPRKIGFTRRFLVGSGASRSVSWGFAAKEDDDPRLWGVFLGVGMLLIGAD*VLIARESKLLCCKARVEVASA 3203 LWH LGQD+ SMAA P TLPV L LLD+ E + L +A NPWE PP+AIV GG+ AVR Y+EA++MGGTTAVTRPLKVVIVGKETVGKTSLRRSI TGKPCMT+ G + + V+ +G L L V L D + + P R A I +K ++ T ++V W SW R G + R + G+ + V A + + + S G ++G P ++ G F Y TR + LP +R A++ L C R K EQ+TRGITRA LE+KWQAKVAE+NRA T VAAP+AA++GA+LIRKWEGGLV+YGSYVFLDV+WFATVLDPLF HKRDS G IDLGGIRV + LDRLD +HV EP+ AE+LW P LA HLLLALKSAGLTFPL D NGGLVILLRMDT PP+YGIKL++ + ++ DL+L V+CSF LGLPPGFVERLLAR C LG PYPFWRYGALIV G + R+FSLSLEYSE KIL +EV GG E A K S L C + H T N + I + R GS L +G + + L Q +A+V Q F D+ PG + +S V S + V F +G S +V F +EDDDPRLWGVFLG+GMLL+G + LIARE KLLC R E ASA Sbjct: 300 LWHALGQDETGSMAAGPG-------------TLPVPLACLLDSLERIYRLSVAQNPWESPPDAIVVGGIPAVRAYFEAIYMGGTTAVTRPLKVVIVGKETVGKTSLRRSIKTGKPCMTRGGGEESTVHVDVEDHDLDGHPIRMFDCAGQVVYYGLLQLFLTPRAVYLLVWDAAKASEMEGLNLEDLAIAPWLRHLTFRVPDASVILVGNKCDRVVRTRRTAVAVDVEHESRQWLESWIEIAR-------------------GHQPRGISLEDGV----SLVSCAASGVGAVA---PSFGRRSGWPCDKSTPGLFHRIIYDSTDDTRVVTMRLPESYRLALEMLEE--------------------LASCS-RSKTEQQTRGITRAILEEKWQAKVAEMNRAGTSVAAPDAAMAGAILIRKWEGGLVEYGSYVFLDVEWFATVLDPLFCHKRDSYGKIDLGGIRVMD--VDSLDRLDEEHVLEPQLAEDLWGPVLAPHLLLALKSAGLTFPLSNDSNGGLVILLRMDTKPPPDYGIKLKEKDQANKFDLRLVVECSFRLGLPPGFVERLLARCCHLGLPYPFWRYGALIVGKGA-EERMFSLSLEYSEARKILTVEVSGGHTEVFAWAALSKVLSVTIKMLLEFPGLPCRTTFFCPLHKT------------------------------------NGMKIRTKDARPGSCL---------------VGESDFCK-LCQDRSAAVGLVAVALQVVEFSDEKFFDEQLREQFAGKVALQGCASWPGSNSE---------------VSGPAPVHISPSXXXXXXXXXXXXXXXXXXXXXXGSRTPWYQDVKTF---VG------AASLVCLAVFGVFHDEEDDDPRLWGVFLGLGMLLVGVEFGLIAREYKLLCFTPRAEAASA 1081
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KNW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE) HSP 1 Score: 401 bits (1031), Expect = 3.580e-124 Identity = 256/564 (45.39%), Postives = 305/564 (54.08%), Query Frame = 3 Query: 1518 MDIAPPFALHICVFRRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHAGRLCRKSPPS*SRCSRSSLVCHAS*CSSAHSTRPRACRSGRQMKAMFVNSARTVRRVLTCWQLLFRWWNSLTISSSMIRSGSSLPRMPRR*LVRIVRYGLG*TTRLRFLVQPLAASV*AANQFEQPSAFPDQXXXXXXXXXXXXXXXXXXXXXXXPGYSKLSQYLHWVQATRCD*CLSRCLAV*FGFSRCGLAQM*NFNTWPKLG-GF*SLDQKAALKVRVPRFPRKIGFTRRFLVGSGASRSVSWGFAAKEDDDPRLWGVFLGVGMLLIGAD*VLIARESKLLCCKARVEVASAV 3206 M+++PP C FRRK ++RTRGITRADLE+KWQAKVAEL+ A TPVAAPEAAISGA+LIRKWEGGLV+YG+YVFLDV+WFATVLDPLFSH+RDS G IDLGGIRV N A +R RLD +HVFEP+ AEELWS ELA HLLLALKSAGLTFPLP DPNGGLVILLRMDT PPEY I+ E+ ++ ++DL LTV C FSLG+PPGFVERLLAR C LG PYPFWRYGAL+V +G + LFSLSL+YSE D +L +EV GG E HA K VL+ + + L MP R GL + L Q A + Q F D+ + ++ G Q N +T L + L + + P + F S A +V FA+KED+DPRLWGVFLGVGM L+G + +LIARE KLLCCK R + ASAV Sbjct: 1 MEVSPPLDGTPCNFRRKAKRRTRGITRADLEEKWQAKVAELSGAGTPVAAPEAAISGAILIRKWEGGLVEYGNYVFLDVEWFATVLDPLFSHRRDSYGDIDLGGIRVTNIASLR--RLDNEHVFEPQLAEELWSRELAPHLLLALKSAGLTFPLPNDPNGGLVILLRMDTKSPPEYSIRREEANQARKYDLTLTVACWFSLGVPPGFVERLLARCCRLGVPYPFWRYGALVVGNGA-EEGLFSLSLDYSEHDNMLKVEVLGGGGEVHAWAALSK--------------------------------------------------VLSVMIKMLSEFPGLPCEPIFFCPQHKTKGMPVRTTDAPAGSGLVEESYFCPLCQDRKAGIDLLAAALQVVGFSDEEFFDEPLRREFAENAERVTRQGCASQHGSDSEVGYLAP-----------------HAVGTMQAMNRSTQTGLPRSYEGLRPRHDVVSGTPWYQDVKTFVG---AASVACLTVFGVFASKEDEDPRLWGVFLGVGMTLLGVEFLLIAREHKLLCCKPREDAASAV 491
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KZA7_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA7_9PHAE) HSP 1 Score: 399 bits (1026), Expect = 2.000e-121 Identity = 278/589 (47.20%), Postives = 324/589 (55.01%), Query Frame = 3 Query: 744 QAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*------------------------KALFTWMWKTTKSMVI-------------QFGYLILP--VRLCTTDCSSYFSPLVPCTCWYGIRGKAARWIA*TSKTLL-------LLPGYGT*LSVCPTQTWYL--WETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPASVL*AVHHLASTS*QRRSVGEQTGPATRARRGFFIA*YS---ILSMTRGL---------LPSIFRRAIKSPMRCLRS--WHHPVGGFMDIAPPFALHICVF-RRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHA 2321 +AVRGYYEAMFMGGTTAVT PLKVVIVGKETVGKTSLRRSITTGKPCMT+DSGV +A+ TW+ V+ Q + L V D + ++ + + + A ++L + YG + YL W+T+ + G+ N+ + + P + R A+++ + L + RR+V + +R S IL+ + G P +F R I +P+ R+ H P G +A + RRK EQRTRGITRADLEQKWQAKVAELN A TPVAAPEAA+SGA+LI SHKRD DGHIDLGGIRVPNDAR RLDRLDRDHVFEPK AE LWSPELASHLLLALKSAGLTFPLPQD NGGLVI LRMDTTR PEYGIKLEQVHK SE DLKLTVKCSFSLGLP GFVER LA+ C +GYPYPFWRYGALIVDDG DKILALEV+GGCEE HA Sbjct: 15 EAVRGYYEAMFMGGTTAVTPPLKVVIVGKETVGKTSLRRSITTGKPCMTRDSGVESTVHVNVEDHKVDGRPIRIFDCAGQAVKTWLSVEDDPEVLEEEIAMELQAVDEQLAGVTLDDDVPSEEEDDDGMYPVILHPVAQFTLFDTMFQSSAPLQVSVLPHVDHCRQVVYYGLLQQFLTPRAVYLLVWDTA-KASEMNGL------NLEDLA-------IAPRLRCLTFRVPDANMVLVGNKLDRVAKARRTVADDLESESRQWLNLVSCSPSGLGILAPSFGARTDWPCGKSTPELFHRIIFNPVDDKRAVTMHIPPG--YQVALEMLEELASSSRRKAEQRTRGITRADLEQKWQAKVAELNSAGTPVAAPEAAMSGAILI-----------------------------SHKRDLDGHIDLGGIRVPNDARARLDRLDRDHVFEPKLAEGLWSPELASHLLLALKSAGLTFPLPQDSNGGLVINLRMDTTRLPEYGIKLEQVHKASEPDLKLTVKCSFSLGLPLGFVERFLAQCCHVGYPYPFWRYGALIVDDG----------------DKILALEVFGGCEEVHA 542
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE) HSP 1 Score: 387 bits (993), Expect = 1.850e-114 Identity = 323/908 (35.57%), Postives = 437/908 (48.13%), Query Frame = 3 Query: 630 TLPVDLDRLLDNFESLKF---LDLAHNPWEHPPEAIVGGGVQAVRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*KALFTWMWKTTKSMVIQFGYLIL--------PVRLCTTDCS---SYFSPL----VPCTCWYGI--RGKAARWIA*TSKTLLLLPGYGT*LSVCPTQTWYLWETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPASV-L*AVHHLASTS*QRRSV------GEQTGPATRARRGFFIA*YSILSMTRGLLPSIFRRAIKSPMRCLRSWHHPVGGFMDIAPPFALHICVFRRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHAGRLCRK--SPPS*SRCSRSSLVCHAS*CSSAHSTRPRACRSGRQMKAMFVNSARTVRRVLTCWQLLFRWWNSLTISSSMIRSGSSLPRMPRR*L--------VRIVRYGLG*TT--RLRFLVQPLAASV*AANQFEQPSAFPDQXXXXXXXXXXXXXXXXXXXXXXXPGYSKLSQYLHWVQATRCD*--CLSRCLAV*FGFSRCGLAQM*NFNTWPKLGGF*SLDQKAALKVRVPRFPRKIGFTR------RFLVGSGASRSVS-WG-FAAKEDDDPRLWGVFLGVGMLLIGAD*VLIARESKLLCCKA-RVEVASA 3203 TLPV L LLD+F+ L LDL+ NPWEHPPEAIV GG+ AVRGY+EA+F GGTT VTRPLKVVIVG ETVGKTSLR SI GKPCMT+ GV +T + +Q L + P+R+ DC+ +Y+ L P + + KA++ + L + P P L W + + + +V S I + R +P + L A L S + R+ G + P + + G P +FRR I +P+ +R+ M ++P + L + + +E +R ++V L A T AA EAA+SGA+LIRKWEGGLV+YG+Y+FLDV WFA VLDPLFSHK+DS+G I LGG V ND ++ RLD +H+FEP+ AE+LW ELA HLL AL SAGLTFP+P DP GLV++LRMDT PP+Y +E+ +DL+L V+CSF LGLPPGFVERLLAR C LG+P+PFWRYGAL+V G + + FSL+LEYSEEDK L ++V G C E HA K S L C H + M+ + N+AR S ++ G+ P P R + +V Y + +LR A V + P++ + G LS+ Q + C C + F R L + P++ + + R PR R R VG+ + V+ +G F AKEDDDPRLWG+FLG+G++L + VL+A+ + C K+ RVE ASA Sbjct: 7 TLPVALASLLDSFDRLHSVGGLDLSQNPWEHPPEAIVTGGMLAVRGYFEAIFRGGTTVVTRPLKVVIVGMETVGKTSLRCSIKAGKPCMTRGGGV---------DSTVHVDVQDHNLDVQDHKAGGHPIRI--FDCAGQAAYYGLLQLFLTPRAVYLLVWDAEKASQMDELNLEDLAIAPWLRQMTFRVPDANVVLVGNKWDLVAEANLH--VADDVERKSR-----EWLTAWIESAHRHQPPQLSLEAGVSLVSCAPSGRAGWAPSFGGRKAWPCDKNKPG---------------QPGLFRRIIYNPVDDMRAVT------MRLSPVYVLALNLL---EELASR------------SRVDALGTAGTTAAASEAALSGAILIRKWEGGLVEYGNYIFLDVGWFADVLDPLFSHKKDSNGIIYLGGKTVTNDDSLK--RLDANHIFEPRLAEDLWGAELAPHLLSALNSAGLTFPIPNDPFEGLVVVLRMDTEPPPDYRTIVEEEQARKYYDLRLVVQCSFRLGLPPGFVERLLARCCHLGFPHPFWRYGALVVGAGAEEGK-FSLTLEYSEEDKTLKVQVNGRCSEVHAWATLSKVLSVTIKMLSEFPGLPCQLEFLCPRH--------EDKSMRVLKANNARP--------------------GSRLVEEGNFCPVCPDRTAGNDLLGAALHVVEYSDTEFSDAQLRKRFADNAKRVARQGRALWPASVTEVGSSTTIASMYKPRAAQKCRIPMNTG--PLSKPCGSTQPVCIETLGCSGLC-ELFFDRRRTQLFVQVSDPAPPQISPISPASLQTNPSSQDSRTPRYQDRMRAWVKDLRVQVGAAGALCVTVFGVFYAKEDDDPRLWGLFLGIGLVLAVVEFVLVAKLHERWCFKSPRVEAASA 826
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE) HSP 1 Score: 347 bits (889), Expect = 1.400e-100 Identity = 252/608 (41.45%), Postives = 312/608 (51.32%), Query Frame = 2 Query: 905 VKSTVHVDVEDHEVDGHPIRIFDSAGQVVYYGLLQLFLTPRAVYLLVWDSGKGSEMDSLNLEDLAIAPWLRYLTFRVPDANVVLVGNKLDRVAKARHTV-ADDVERESNQ*LKSWIENAPAHHPYGLALEAGVSLVSCSPSGLDILTASFGGGTDWPCDESTPGLFHRMIFNSVDDKRTVTIHLPPSYQVAHEMLEELASSSRWIYGYSTAFCIAHLCF*AQGRTANPWYHKSRFGAKVASQGG*AKPCRNAGSRSRSGHIRCDVDQEVGGRAGEIRQLRLPRRQMVCHSSGPLVQPQARLRRPH*SWRHSGAERCTRTLGQAGQRSCFRTETR*RALESRARVAPSPGSQECRAD--VSPT-ARSQWGLGD-PSTHGHNAPT*VWYQARASTQN**ARPEAY------CEMFVQSRFA----PWLCRASPSAVVLLGLSLPL----LAIRGSDSG*RCGKTAVVLTEFR-VL*GRQDPGIGGVWRM*GGPCWAALSKVPSVMIKMLSEFPGLPCELMFFCPQHKTKGMPIRTTDESY-VCQ--------------LCQDRAAGIDLLAAALQVVEFSDDKFFDDPLREQFAENAKKVTRQDCALWPG 2623 V+STVHVDVEDHEVDGHPIR+FD AGQVVYYGLLQLFLTPRAVY+LVWD+ K SEM+ LNLEDL IAPWLRYLTFRVPDA+V+LVGNK D V + R TV A DVE ES Q L+S IE A H P G++LE GVSLVSC+ SG+ ++ SFG G+ WP D++TPGL+ R+ +NS R VT+HLP SY++A +MLEELAS SR + H+ + + W KVA + V AG I ++ G LV+ + S+ E L C + ++ + RV G D + P A W P+ + + S EA + V+ F+ P + LGL P I G + R ++ +E R +L G V+ WAALSKV SV IKMLSEFPGLPC FFCP HKTK M IRT D S C+ L +DRAAGIDLLA ALQVVEFSD++FFD+ LREQFAE K+ + CA W G Sbjct: 119 VESTVHVDVEDHEVDGHPIRVFDCAGQVVYYGLLQLFLTPRAVYMLVWDAAKASEMEGLNLEDLGIAPWLRYLTFRVPDASVILVGNKCDHVVRTRRTVVAADVEHESRQWLESLIEIARGHQPRGISLEDGVSLVSCAASGVGVVAPSFGAGSGWPFDKNTPGLYRRIAYNSASRTRAVTMHLPESYRLALKMLEELASCSR-------SKTEQHIRGVTRAILEDKWQ------TKVAEMN----------------RVGTSVSAPDAAMAGAI---------LIRKWEGGLVE--------YSSYVFLDVEWFATVLDPL---FCHKRDSYGKIYLGGMRVTDVDGLDRLDEDHVLEPQLAEEDWRFPSLPNDSNGGLVILLRMDTKPSPDYGIKLKEADQANKFDLRLVVECSFSLGLPPGFVERLLARCCHLGLPYPFWRYGALIVGKGAEVRMFSLSLEYSEERKILTVEVSGGRTEVF------AWAALSKVLSVTIKMLSEFPGLPCGTTFFCPLHKTKRMKIRTKDVSARACRSKYVFFVLRSQKFYLNKDRAAGIDLLAVALQVVEFSDEEFFDESLREQFAE---KMALRGCASWLG 668
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KM38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM38_9PHAE) HSP 1 Score: 319 bits (818), Expect = 3.580e-97 Identity = 159/220 (72.27%), Postives = 177/220 (80.45%), Query Frame = 2 Query: 905 VKSTVHVDVEDHEVDGHPIRIFDSAGQ------------------VVYYGLLQLFLTPRAVYLLVWDSGKGSEMDSLNLEDLAIAPWLRYLTFRVPDANVVLVGNKLDRVAKARHTVADDVERESNQ*LKSWIENAPAHHPYGLALEAGVSLVSCSPSGLDILTASFGGGTDWPCDESTPGLFHRMIFNSVDDKRTVTIHLPPSYQVAHEMLEELASSSR 1510 ++STVHVDVEDH+VDGHPIRIFD AGQ +VYYGLLQLFLTPRAVYLLVWD+ K SEMD LNLEDLAIAPWLRYLTFRVPDANV+LVGNK DRV +AR TVADDVERES + LKSW+E A H P+ L+LE GVSLV+C+ S L + +FGGGT WPCD+STPGLFHRMI+N VDDKRTVT+HLPPSY VA EMLEELASSSR Sbjct: 23 LESTVHVDVEDHKVDGHPIRIFDCAGQSYAPLDVSVIPHVDHCRQIVYYGLLQLFLTPRAVYLLVWDAAKASEMDGLNLEDLAIAPWLRYLTFRVPDANVILVGNKWDRVVRARCTVADDVERESRRFLKSWMEKAHGHQPHRLSLENGVSLVTCAQSDLGVSAPAFGGGTGWPCDKSTPGLFHRMIYNPVDDKRTVTMHLPPSYHVALEMLEELASSSR 242
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: A0A6H5KED3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE) HSP 1 Score: 263 bits (671), Expect = 2.190e-74 Identity = 130/210 (61.90%), Postives = 155/210 (73.81%), Query Frame = 3 Query: 1692 MLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKILALEVYGGCEEAHA 2321 +++ KWEGGLV+YGSYVFLDV+WFA VLDPLFSHKR+ G IDLGG V + R L RLD DH+FEP+ AEELW P+LA HLL ALKSAGLTFP+P DPN GLVIL+RM PP Y KL+Q ++DLKL C F LGLPPG +ER+LAR C LG+PYPFWRYGALI G G + FS L YS+E+K+L + V+GG E+ A Sbjct: 2 IVVEKWEGGLVEYGSYVFLDVQWFAEVLDPLFSHKRNLYGSIDLGGRSVTKNVRS-LRRLDNDHIFEPRLAEELWGPDLARHLLAALKSAGLTFPMPNDPNEGLVILVRMKDKPPPGYDTKLKQAIAARKYDLKLIFHCKFRLGLPPGLIERILARCCQLGHPYPFWRYGALI--SGEGGQGSFSADLRYSDENKLLEIVVHGGREKVDA 208
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Match: D7FM75_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM75_ECTSI) HSP 1 Score: 228 bits (581), Expect = 1.860e-57 Identity = 198/605 (32.73%), Postives = 268/605 (44.30%), Query Frame = 3 Query: 633 LPVDLDRLLDNFESLKFLDLAHNPWEHPPEAIVGGGVQA-VRGYYEAMFMGGTTAVTRPLKVVIVGKETVGKTSLRRSITTGKPCMTQDSGV*KALFTWMWKTTKSMVIQFGYLI-LPVRLCTTDCSSYFSPLVPCTCWYGIRGKAARWIA*TSKTLLLLPGYGT*LSVCPTQTWYLWETSWTVWQRPGIQ*RMT*NVRATSS*SPG*RMRPHIIPTGLRWKPA---SVL*AVHHLASTS*QRRSVGEQTGPATRARRGFFIA*YSILSMTRGLLPSIFRRAIKSPMRCLRSWHHPV---------------------GGF-MDIAPPFALHICVF----------------------------RRKDEQRTRGITRADLEQKWQAKVAELNRAETPVAAPEAAISGAMLIRKWEGGLVKYGSYVFLDVKWFATVLDPLFSHKRDSDGHIDLGGIRVPNDARVRLDRLDRDHVFEPKPAEELWSPELASHLLLALKSAGLTFPLPQDPNGGLVILLRMDTTRPPEYGIKLEQVHKTSEHDLKLTVKCSFSLGLPPGFVERLLARWCCLGYPYPFWRYGALIVDDGVGKRRLFSLSLEYSEEDKIL 2282 +P LD LL E + +NPW +PP ++G + VR Y+ A+ G + V RPLKVV+VGKE+VGKTSLR+SI GK T++ G ++T + ++ L P+R+ DC+ + G ++ T + + LL V P + N+ +S P LRW + V A L T R V + G T AR LS G++ R I HH GG+ D++ P LH F R + + RG+ R +L+ W KV EL R + A E A+ GA+ I +EG LV YGS+V +DV+W ATVL PL SHK S G ++LGGI V RV +RL +D + EPK AEELW P+ HLL AL SAGLTFP P D GGLV+LLR+D RP + G L+ + HD ++ C+ G PPGF+ERLL+ C LG FWRYG LI + R FS+ LEY+E+D L Sbjct: 309 VPSALDSLLRVVEGCSQVRWGNNPWRYPPAEVMGQSISVHVRQYFNAVLAGSVSTVRRPLKVVVVGKESVGKTSLRQSIVAGKARPTRNHG---------GESTVHIDVEDHELDGRPIRI--FDCAGQVA----------YTGLLQLFL--TPQVIHLL-----------------------VVDMPSV----VGNIENGTS-------NPLEDLGALRWVRSLSFRVPGAAVILVGTKCDR--VKDTDGETTEAR----------LSRAAGMVEDNIRSWIHKWTTQRLHNHHAQSIAFENGVSLVNCGLPCDELDGGWPCDVSQPSLLHRITFKDGKARGVDADLPLSWGCALSLLDETARRVRGQPGFRGVERTELDGLWHDKVDELKRGGHEMEATEHALDGAISIMAYEGSLVVYGSFVIVDVQWLATVLKPLCSHKDMSMGEVNLGGITVRPGPRV--ERLVKDGILEPKLAEELW-PDTWEHLLRALSSAGLTFPRPNDKEGGLVVLLRLDKDRPDDVGDILDDFR--ASHDGQIVASCTLLQGAPPGFIERLLSTCCRLGSCNHFWRYGVLI------QSRSFSVILEYAEDDDTL 833 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig999.21635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig999.21635.1 >prot_Ecto-sp13_S_contig999.21635.1 ID=prot_Ecto-sp13_S_contig999.21635.1|Name=mRNA_Ecto-sp13_S_contig999.21635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=298bp MASTNRDALVALFRSTGGAGWTRRDNWDTHAAIGTWPHLGALEELILSSNback to top mRNA from alignment at Ecto-sp13_S_contig999:3506..13142- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig999.21635.1 ID=mRNA_Ecto-sp13_S_contig999.21635.1|Name=mRNA_Ecto-sp13_S_contig999.21635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=9637bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:3506..13142- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig999:3506..13142- >mRNA_Ecto-sp13_S_contig999.21635.1 ID=mRNA_Ecto-sp13_S_contig999.21635.1|Name=mRNA_Ecto-sp13_S_contig999.21635.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig999:3506..13142- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |