mRNA_Ecto-sp13_S_contig12616.2163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12616.2163.1
Unique NamemRNA_Ecto-sp13_S_contig12616.2163.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 565 bits (1455), Expect = 2.430e-186
Identity = 323/513 (62.96%), Postives = 365/513 (71.15%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETS----LNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSH-LGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL----------------VIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEARGWIPLLL 1769
            VL N+CAAL YL AP LE S    +   ++RE+VQ   GA VCQRL ELL H SP V ++ L A++GIVSSEDQHT+ L+ SN  P L HLLVSSH   LREKTCQVIC ITTG + QIQAV EA IIPTLIQ LADVN  IRRYAA AISNV E GDPEEVKGWIPLLFILLE+DTQGIL+V  ILEKFLKVVP SDAWR  + LL+S  T V  + C  I  IT GNKKQSRAAIEAGIVPVLIKLLAD N   R  AAS IS V E G+ EE +GWIPLLFILLE+ +TQ +  V  IL K LKVVP S+ WRR R LLSSS+  VR++ C +I  +T  NKEQ+RAAIEAGIVPVLI+LL                V E  EP+E RGWIP+LL+L E  D Q I+G  EIL   L+ VP S+ WR   HLLSSSNT VR +AC V   IT  NKEQ RA +EAGIVPVLIK LADRD DI+ HAASA+S VIE+ E EE R W+  LL
Sbjct:  434 VLRNACAALRYLCAPVLEASFLAGIGALMHREMVQAVVGAGVCQRLVELLDHASPAVHLEVLWAMNGIVSSEDQHTQVLIDSNVLPRLHHLLVSSHHQNLREKTCQVICRITTGREEQIQAVIEAGIIPTLIQFLADVNSDIRRYAASAISNVAEFGDPEEVKGWIPLLFILLESDTQGILRVFGILEKFLKVVPHSDAWRPFRSLLNSPNTVVCGRACRAIHSITWGNKKQSRAAIEAGIVPVLIKLLADANPVFRYYAASAISNVAEFGDPEEVKGWIPLLFILLES-DTQGILRVFGILEKFLKVVPASDAWRRLRDLLSSSDPKVREKTCEIIHKVTRCNKEQSRAAIEAGIVPVLIQLLADGNPDIPRNPASVSNVTEEDEPKEVRGWIPVLLALLEIDDTQVIIGALEILGITLQAVPHSDAWRWLCHLLSSSNTKVRYKACEVTRWITTVNKEQARAVVEAGIVPVLIKQLADRDSDIQRHAASAISNVIELRESEEIRRWVSRLL 945          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT8_ECTSI (Importin alpha-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT8_ECTSI)

HSP 1 Score: 346 bits (888), Expect = 3.030e-104
Identity = 216/430 (50.23%), Postives = 262/430 (60.93%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPT-VQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADV-NHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLE-NDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL---------------------------VIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLK 1493
            VL N+C AL  +   R   +         VQ    A VCQRL  L+ H SPT V++++L AI  I SS D+H +ELV SN  P LR LL SSH  LREKTCQVIC ITTG+K Q QAV EA II  +I +L    N  +  +     S    +G PEE+  WIP L  LL   + Q I     + ++  KVVPDS  W+RLQHLLSSS T+V EK C VI  IT GNK+Q+RAAIEAGI+PVLI+LL + N  IR  AAS IS + E+GE EE R WIPLL  LLE+   Q V  VSKIL  +L+V PDS+ WRR   LLSSS+  VR++ CRVI  IT GNKEQTRA I+AG+VPVLI+LL                             E G+PEE RGWIP L+SL EN ++  I+ V EILEKVL+
Sbjct:  468 VLRNTCTALRRVCISRWNNNSTQPSKHLRVQAVIEAGVCQRLVRLISHDSPTTVKIKSLRAISTIASSSDRHKQELVNSNVLPRLRDLLSSSHQMLREKTCQVICRITTGSKEQTQAVIEAGIILAVIHILPSTRNLLVGSHIQTMFSRAIVVGRPEEMMEWIPPLVDLLGIGNFQNIPLALWVFKQIAKVVPDSHGWQRLQHLLSSSDTEVCEKACRVIHRITSGNKEQARAAIEAGIIPVLIQLLPNANPYIRSDAASAISNITELGEPEEVRRWIPLLLGLLEDCNIQSVVGVSKILDHILQVDPDSDAWRRLLDLLSSSDAEVREKTCRVIHKITEGNKEQTRAIIDAGVVPVLIQLLPNVKYYIRWVLPLVVDPPQDAASVILSATEEGKPEEVRGWIPPLVSLLENDNMTFILNVLEILEKVLE 897          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 321 bits (823), Expect = 6.840e-96
Identity = 204/418 (48.80%), Postives = 247/418 (59.09%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLV-----------------IEVGEPEEARGWIPLLLSL*EN-FDIQSIVGVSEILEKVLK 1493
            VLTNSCAALG L  PRL TSL PRVNRE+VQ  AGAEVCQRL ELL HTSP VQMQAL AI+GIVSSEDQHTR                                                I+ ++I++                   TE+G  E+V+ W+PLL  LLEND   ++          +V PDSDAWRRL+HLLSSS T+VRE TC VI  ITLGNK+Q+RA IEAGIVP LI+LL+D+N   R   ASV S   EVGE EE   W+PLL  LL+N +TQ +  V  IL  +L+VV DS+ W+  R LLSS NT VRDR C+VI  IT G+KEQTRA +EAGIVPVLI+LL                   ++GE EE R  IPLLLSL E+ +  + +V V EI+E++L+
Sbjct:  445 VLTNSCAALGCLCTPRLGTSLYPRVNREMVQAVAGAEVCQRLVELLDHTSPAVQMQALFAINGIVSSEDQHTR------------------------------------------------IVASVIRI------------------ATEVGGLEDVRKWVPLLLNLLENDGAQVI---------FEVDPDSDAWRRLRHLLSSSNTEVRENTCQVIRRITLGNKEQTRAMIEAGIVPALIQLLSDLNPDTRRYVASV-SNATEVGEPEEVGRWVPLLLDLLQNDDTQLLVKVLTILEIILQVVRDSDAWQPLRRLLSSPNTKVRDRTCQVIHRITLGSKEQTRAMVEAGIVPVLIQLLADVNYDIRSHAASAISNATKLGESEEVRRRIPLLLSLLEHIYFYEVMVDVLEIIEEILE 786          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A5B6Z4Y8_DAVIN (Importin subunit alpha n=5 Tax=asterids TaxID=71274 RepID=A0A5B6Z4Y8_DAVIN)

HSP 1 Score: 87.0 bits (214), Expect = 2.450e-14
Identity = 73/244 (29.92%), Postives = 111/244 (45.49%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHL-GLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK-----GWI-PLLFILLENDTQGILKVSEILEKFLKV-------------------VPDSDAWRRLQHLLSSSGTKVREKTCDVIE 947
            VLT++C AL YL       S  P    + +Q    A VC RL ELL H SPTV + AL  +  IV+ +D  T+ ++ +   P L  LL  +H   ++++ C  I  IT GN+ QIQAV EASII  L+ LL +                   G  E+++     G I PL  +L+  D + +    E LE  LKV                   + + D   ++++L +    ++ EK   ++E
Sbjct:  261 VLTDACWALSYL-------SDGPN---DKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFMIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNRGQIQAVIEASIILPLVHLLQNAEFXXXXXXXXXXXXXXXXGSNEQIRFLASQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGMNGGINIYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILE 494          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A0L9U929_PHAAN (IBB domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9U929_PHAAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.610e-9
Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGT--------------PGLRHLLVSSHLGLREKTCQ-VICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK 767
            VLT++C  L YL    ++           +Q      VC +L +LL + S  V + AL A+  I      HT+ L  SN                P LR LL   +  L  K    +I  IT+G  AQ+QAV +A IIP+L++++ +    +++ AA AI NVT +G  + ++
Sbjct:  141 VLTDTCWTLAYLSESHMDN----------IQAIIELGVCPKLVQLLQYPSDGVILPALLALGNIAVGGGAHTQILPSSNSIATKKTQLLIDNQLLPCLRQLLEREYTRLIFKEASWIIAFITSGTPAQVQAVIDADIIPSLVKVVHNAEFEVKKEAACAIFNVTCIGSDDNIR 303          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A0L9U9M1_PHAAN (Importin subunit alpha n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9U9M1_PHAAN)

HSP 1 Score: 62.8 bits (151), Expect = 1.120e-6
Identity = 84/383 (21.93%), Postives = 157/383 (40.99%), Query Frame = 3
Query:  660 IPTLIQLLADVNHHIRRYAALAISNVTELGDP-----EEVK-GWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWI-------PLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWR------RFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLVIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNT-AVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEAR 1748
            +P +++ + D   H +  A   +  +  LG+P     E VK G +P    LL  D    L+V E+L            W                    VI      + +   A +E G+VP+L+ L +  +  IR  A  ++  +  VG++ + R  +       PLL  L  +     V  V+  L+ LL+ +P  +  +        + L+ +++  V    C  +  I+ G  +  +A IE G+ P L++LL      P +    +P L         +++  ++   E   + + D+      R LL+   T  +   A   I  IT     Q +A ++A I+P L+K++ + +++++  AA A+  V  +G     R
Sbjct:   68 VPEIVKRICDEYPHKQLEATAHLRTILTLGEPAPPVDELVKHGILPRFLELLSRDDAPYLQV-EVL------------W--------------------VISDFVFASSQHKSAVVEVGVVPLLVNLFSSSHDDIREEAIWILGNI--VGDSPDFRDLVLSHGALMPLLCQLQPHSSLHIVRAVTWSLSVLLRGMPPVDFEQVKIALPALQRLIHATDEDVLADTCWTLAYISEGRMDIVQAIIELGVCPKLVQLLQY----PSDGV-ILPAL---------EALGNIAAGGEAHTQFLIDNQLLPCLRQLLAREYTKTIFKEASWTIAVITSVTSAQVQAVVDANIIPALVKVVHNAEFEVKKEAACAIFNVTCIGSDNNIR 401          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: UPI001F5F62A8 (importin subunit alpha-1a-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F62A8)

HSP 1 Score: 61.2 bits (147), Expect = 2.510e-6
Identity = 63/284 (22.18%), Postives = 124/284 (43.66%), Query Frame = 3
Query:  939 VIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWI-------PLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWR------RFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLVIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNT-AVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEAR 1748
            VI      + +   A +E G+VP+L+ L +  +  IR  A  ++  +  VG++ + R  +       PLL  L  +     V  V+  L+ LL+ +P  +  +        + L+ +++  V    C  +  I+ G  +  +A IE G+ P L++LL   +         +P L         +++  ++   E   + + D+      R LL    T  +   A   I  IT     Q +A ++A I+P L+K++ + +++++  AA A+  V  +G  +  R
Sbjct:   13 VISDFVFASSQHKSAVVEVGVVPLLVNLFSSSHDDIREEAIWILGNI--VGDSPDFRDLVLSHGALMPLLCQLQPHSSLHIVRAVTWSLSVLLRGMPPVDFEQVKIALPALQRLIHATDEDVLADTCWTLAYISEGRMDIVQAIIELGVCPKLVQLLQYPLD-----GVILPAL---------EALGNIAAGGEAHTQFLIDNQLLPCLRQLLEREYTKTIFKEASWTIAVITSVTSAQVQAVVDADIIPALVKVVHNAEFEVKKEAACAIFNVTCIGSDDNIR 280          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A835FS31_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FS31_9POAL)

HSP 1 Score: 57.4 bits (137), Expect = 4.860e-5
Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 3
Query:  294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK 767
            VL+++C+A+ ++         +   + + +Q     +VC RL ELL H+SPTV   AL                                           V+  I  GN AQIQAV + +II  L+ L+    + +++ AA AI+N T++G P++++
Sbjct:  174 VLSDACSAISFMF--------DGCDDSKKIQALIDVKVCPRLVELLTHSSPTVVYPAL------------------------------------------SVVSRIANGNAAQIQAVIDGNIIGPLVHLMQAAAYDVKKEAAFAIANATDVGTPDQIE 281          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FJT9_ECTSI2.430e-18662.96Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT8_ECTSI3.030e-10450.23Importin alpha-like protein n=1 Tax=Ectocarpus sil... [more]
D7FJT7_ECTSI6.840e-9648.80Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
A0A5B6Z4Y8_DAVIN2.450e-1429.92Importin subunit alpha n=5 Tax=asterids TaxID=7127... [more]
A0A0L9U929_PHAAN1.610e-930.64IBB domain-containing protein n=1 Tax=Phaseolus an... [more]
A0A0L9U9M1_PHAAN1.120e-621.93Importin subunit alpha n=1 Tax=Phaseolus angularis... [more]
UPI001F5F62A82.510e-622.18importin subunit alpha-1a-like n=1 Tax=Vigna umbel... [more]
A0A835FS31_9POAL4.860e-525.95Uncharacterized protein n=1 Tax=Digitaria exilis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12616contigEcto-sp13_S_contig12616:709..4993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score394.0
Seed ortholog evalue6.6e-107
Seed eggNOG ortholog2880.D7FJT9
Model size1770
Hectar predicted targeting categoryother localisation
Exons9
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
Cds size978
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12616.2163.1prot_Ecto-sp13_S_contig12616.2163.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12616 1611..4538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.3404331-UTR-Ecto-sp13_S_contig12616:708..7871681462673.3404331-UTR-Ecto-sp13_S_contig12616:708..787Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12616 709..787 -
1681462673.3511264-UTR-Ecto-sp13_S_contig12616:1146..13441681462673.3511264-UTR-Ecto-sp13_S_contig12616:1146..1344Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12616 1147..1344 -
1681462673.3618288-UTR-Ecto-sp13_S_contig12616:1550..16101681462673.3618288-UTR-Ecto-sp13_S_contig12616:1550..1610Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12616 1551..1610 -
1681462673.4308798-UTR-Ecto-sp13_S_contig12616:4538..49931681462673.4308798-UTR-Ecto-sp13_S_contig12616:4538..4993Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12616 4539..4993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.3692799-CDS-Ecto-sp13_S_contig12616:1610..16731681462673.3692799-CDS-Ecto-sp13_S_contig12616:1610..1673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 1611..1673 -
1681462673.376907-CDS-Ecto-sp13_S_contig12616:2310..24811681462673.376907-CDS-Ecto-sp13_S_contig12616:2310..2481Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 2311..2481 -
1681462673.3844256-CDS-Ecto-sp13_S_contig12616:2687..28341681462673.3844256-CDS-Ecto-sp13_S_contig12616:2687..2834Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 2688..2834 -
1681462673.3952365-CDS-Ecto-sp13_S_contig12616:3184..33821681462673.3952365-CDS-Ecto-sp13_S_contig12616:3184..3382Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 3185..3382 -
1681462673.402828-CDS-Ecto-sp13_S_contig12616:3588..37321681462673.402828-CDS-Ecto-sp13_S_contig12616:3588..3732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 3589..3732 -
1681462673.4103737-CDS-Ecto-sp13_S_contig12616:4033..42311681462673.4103737-CDS-Ecto-sp13_S_contig12616:4033..4231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 4034..4231 -
1681462673.4198592-CDS-Ecto-sp13_S_contig12616:4481..45381681462673.4198592-CDS-Ecto-sp13_S_contig12616:4481..4538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12616 4482..4538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12616.2163.1

>prot_Ecto-sp13_S_contig12616.2163.1 ID=prot_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp
MQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVIC
GITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDP
EEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSS
SGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLG
AASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVV
PDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPV
LIKLLVIEVGEPEEARGWIPLLLSL*
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mRNA from alignment at Ecto-sp13_S_contig12616:709..4993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12616.2163.1 ID=mRNA_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12616:709..4993- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAATAGAAGGAGCTTGTGGTTCTGCCTACAGCGAAGTCGTTCTCTTGAA TGTCGAGTTCATAGCACTGGCTGTTCGTTTTAAGCTGTGCCTGACGTCCC CATCACGCCTGGGAACGCGTCAATTTTATCTGGGCTTGATAACAATGGTA TGGTCGCTCTTTCTTTTTGAGCCCTTGCCCTCTAAAAATGAGGGGGAATT GGTATTCCCCTGATCGGTAAGGAGCGAAGCCCGATGCATGTACCCCCTCC TAACTACGCCCCCCTTTGCGCCGACTCCGGCGGTGCTCCGTAGGTGCTGA CAAACTCGTGTGCAGCCCTAGGCTACCTTTTGGCCCCGCGGTTGGAAACA TCTCTAAATCCCAGGGTAAATAGAGAAATTGTCCAGGTGGCCGCCGGAGC CGAAGTTTGCCAGCGCCTAGGGGAATTGCTGCACCACACTTCTCCCACCG TGCAGATGCAAGCTTTGTGTGCCATCCATGGAATCGTTTCGAGCGAGGAC CAGCACACCCGGGTGATGAATAGGGCTTTCGATAGAACTGAAGGGTAGTC TTGGGTAGGGGGGACTTCTGAGCTTGAGGGCAACATGAAGGATGGAGAGG TTGTATCACAAGCGGCATGTTTGTAGTGCCCTAATGTGTATGTGTGTATT GCATCAAGCGGCTGGTCGACCCGATCGTTCATGTATCGTGTGCCTACGTT CGTTCATAAGAGACGTTTCGTTACCTCCGGCCTTCGTCTTTATGAACTTG CCACGTCTACAGGAGTTGGTCATTTCCAACGGGACGCCGGGGCTACGTCA CCTGCTAGTTTCGTCTCATCTGGGGCTTCGCGAGAAGACTTGCCAAGTCA TTTGCGGGATCACGACGGGCAACAAGGCGCAGATCCAGGCAGTGACCGAG GCCAGTATCATCCCCACCCTCATCCAGCTCCTTGCCGATGTGAATCACCA CATTCGACGGGTGCGTGATTTGTTCGCAGCACATTGACCTCTTGTTGTGT TCGTGCTTGATGTACGTTTCACTGCCCTCCATCATGTGGTTTTCTCTCTA TAAGGCAGGACACGTACTCTCATGACGATTTCGATCCCTCAAGAGTTTTT TGCGTCGTCGAACTTCGTCGTGTCCTGATTTGCCTGAACAATTGCGCCGC AGGACTAAGGTTAATGCCAGAGATCGTGGAGATTTCGAGGCTACACCTGT TTTAGTTCTGCAATGCGCGAACGCATACCTGTTGCTCGTCGTTGTCGCCT CCCACCCCCAGTACGCTGCGTTAGCTATCTCGAACGTGACCGAGTTAGGC GATCCGGAGGAAGTCAAGGGATGGATCCCGCTCCTGTTCATCCTCTTGGA GAATGATACCCAAGGCATCCTTAAGGTGTCCGAGATCCTTGAGAAATTCC TCAAGGTACGACTCATGAACTAGGTGTCCACAGAGTTACAAGACATGTCG ATGCATGTTGTCGTTTGTGCCCGGAATAATTGTGTTGAGTTGACCGTAGA GGCTCGTGGGTGCTTCGCGTCTCTTGTTTTGATTGGCATGGCTATGTGCC TTCACCCGACAAGGTGTTCATGGCCTTTGGTGACGTCTCCTTGTTTGTTT CTCATCCGCAGGTGGTTCCTGACTCCGATGCATGGCGGCGGCTCCAACAT CTGCTCAGCTCGTCGGGTACTAAAGTCCGCGAGAAGACTTGCGACGTCAT CGAATACATCACGCTGGGCAACAAGAAGCAGTCTCGGGCCGCGATCGAGG CCGGCATCGTACCTGTCCTCATCAAGCTCCTTGCCGATGTGAACTACGGC ATTCGACTGGTGCGCAATTTGTTCGCCGCACTTTGAGCACTTGTTGTTTT CGTGCGTGTGATTTTTCGCTGCACTGCTGTGCGTTAACTGGTTCTCTTTT CGATGAGGCGGGGTGTCTTGAACTCTCGTCACGATTTTGATCCGAGCAGC TTTTCCTGTGTCCTCGGAGGTCGTGCTTCAGATTCCAGCCCTTCTTTTGA TGTGTGATTGTGCCCTATTTATCTGCACCGTTGCACGGCAGGCATATCTA GAGTGTAGCCCAGCGATTTTGCGCGTACGTGTTCGAGGCTGCACCTTTTT TTTTCGTGCAACGCGCGAACGCGTGCTAGTCGCGGTTGTCGTCCTCCCCA CCCCCCCAGGGTGCTGCATCGGTTATTTCCAAGGTCATCGAGGTAGGCGA GGCGGAGGAAGCCAGAGGATGGATCCCGCTCCTGTTCATCCTCTTGGAGA ATGGCGAAACCCAAGACGTCCCCTTGGTGTCCAAGATCCTTACGAAATTA CTCAAAGTGCGACTAATGTGAAGGTGTCGACAGAGTGTCTAGACACGTCG ATGCGTTGTTGTAGCTTGTGCCCAGAATGTTGTATGGAGTTGACCGTAGA GGCTCGTGGACGCTTGGTGCGTTTTACTTTGACTGGAATGGCTACGTGCC TTCACCCGGCAAGGTGATCATGAGTTTTGGCTGACGTGTCCGTGAATGTT GCTCATCCGCAGGTCGTTCCTGACTCCAATACATGGCGACGGTTTCGTCA TTTGCTCAGCTCGTCGAACACAGCAGTCCGCGATAGGGCTTGCCGAGTCA TCGACTGCATCACGTGGGGCAACAAGGAGCAGACTCGGGCCGCGATCGAG GCCGGCATCGTACCTGTCCTCATCAAGCTCCTTGCCGATAGGGATTACGA CATTCGACCGGTGTGTTATTCATCGGCAGGACACTGACCGCTTGGGGTAT TCGTGCGTGTGCGTTGTTTCGCTGCACTCTCGTTTCGATGGAGGCGGAGC ATATTCACTTTGATCACGCAATTTGATCTGACTAGTGTTCGTCATGCCGT CTAACGTCGTTTTGCTTCAGATATTTTNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTGCGTGTGCGTTGTTTCGCT GCACTCTCGTTTCGATGGAGGCGGAGCATATTCACTTTGATCACGCAATT TGATCTGACTAGTGTTCGTCATGCCGTCTAACGTCGTTTTGCTTCAGATA TTTTCTGGCTAATCTTCTTTTGTGTGGTTGTGCACCAGTTGGCCCGCACC GTTGAAAGGAAGCTAGAAGTATAGAATTTTTACTGAAGCGTTGCGTATAC ATGCTCGAGGCTGTAGTAGTTTTAGTTATGCATGCGTCTTGCTATCGACA CGTGCGGTGCTACTCGCGGTCCCCCCGCCCCCTCCCCCCCCCCCAGCACG CTGCATCAGCTCTCTCCAAGGTCATCGAGGTAGGTGAGCCGGAGGAAGCC AGAGGATGGATCCCGCTCTTGTTGAGCCTCTAAGAGAACTTCGACATCCA ATCCATCGTCGGGGTGTCAGAGATCCTTGAGAAAGTCCTCAAGGTGCGAC TCATAATCTAGGCGTTCACAGAGCGGCTAGACATGTCGATGCATGTTGTC GTTTGTGCCCAGAATGTTGTATGGAGTTGACCGTAGAGGCTCGTGGACGC TTGGTGCGTTTTACTTTGATTGGAATGGCTACGTGCCTTCACCCGGCGAG GTGATCATGGGTTTTGGCTGACGTGTCCGTGAATGTTGCTCGTCCGCAGG TGGTGCCTGACTCCAATACATGGCGACGGTTTCGTCATCTGCTCAGCTCG TCGAACACAGCAGTCCGCGATAGGGCTTGCCGAGTCATCGACCGCATCAC GCGGGGCAACAAGGAGCAGACTCGGGCCGCGATCGAGGCCGGCATCGTAC CTGTCCTCATCAAGCTCCTTGCCGATAGGGATTACGACATTCGACCGGTG TGCGATTTGTCCGCAGCACATTAACCGCTTGGGGTGGTCGTGCGTGTGCG TTGTTTCGCTGCACTCTCGTTTCGATGGAGGCGGAGCATATTCACTTTGA TCACGCAATTTGATCTGACTAGTGTTCGTCATGCCGTCTAACGTCGTTTT GCTTCAGATATTTTCTGGCTAATCTTCTTTTGTGTGGTTGTGCACCAGTT GGCCCGCACCGTTGAAAGGAAGCTAGAAGTATAGAATTTTTACTGAAGCG TTGCGTATACATGCTCGAGGCTGTAGTAGTTTTAGTTATGCATGCGTCTT GCTATCGACACGTGCGGTGCTACTCGCGGTCCCCCCGCCCCCTCCCCCCC CCCCAGCACGCTGCATCAGCTCTCTCCAAGGTCATCGAGGTAGGTGAGCC GGAGGAAGCCAGAGGATGGATCCCGCTCTTGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12616:709..4993-

>mRNA_Ecto-sp13_S_contig12616.2163.1 ID=mRNA_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12616:709..4993- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAAGCTTTGTGTGCCATCCATGGAATCGTTTCGAGCGAGGACCAGCA
CACCCGGGAGTTGGTCATTTCCAACGGGACGCCGGGGCTACGTCACCTGC
TAGTTTCGTCTCATCTGGGGCTTCGCGAGAAGACTTGCCAAGTCATTTGC
GGGATCACGACGGGCAACAAGGCGCAGATCCAGGCAGTGACCGAGGCCAG
TATCATCCCCACCCTCATCCAGCTCCTTGCCGATGTGAATCACCACATTC
GACGGTACGCTGCGTTAGCTATCTCGAACGTGACCGAGTTAGGCGATCCG
GAGGAAGTCAAGGGATGGATCCCGCTCCTGTTCATCCTCTTGGAGAATGA
TACCCAAGGCATCCTTAAGGTGTCCGAGATCCTTGAGAAATTCCTCAAGG
TGGTTCCTGACTCCGATGCATGGCGGCGGCTCCAACATCTGCTCAGCTCG
TCGGGTACTAAAGTCCGCGAGAAGACTTGCGACGTCATCGAATACATCAC
GCTGGGCAACAAGAAGCAGTCTCGGGCCGCGATCGAGGCCGGCATCGTAC
CTGTCCTCATCAAGCTCCTTGCCGATGTGAACTACGGCATTCGACTGGGT
GCTGCATCGGTTATTTCCAAGGTCATCGAGGTAGGCGAGGCGGAGGAAGC
CAGAGGATGGATCCCGCTCCTGTTCATCCTCTTGGAGAATGGCGAAACCC
AAGACGTCCCCTTGGTGTCCAAGATCCTTACGAAATTACTCAAAGTCGTT
CCTGACTCCAATACATGGCGACGGTTTCGTCATTTGCTCAGCTCGTCGAA
CACAGCAGTCCGCGATAGGGCTTGCCGAGTCATCGACTGCATCACGTGGG
GCAACAAGGAGCAGACTCGGGCCGCGATCGAGGCCGGCATCGTACCTGTC
CTCATCAAGCTCCTTGTCATCGAGGTAGGTGAGCCGGAGGAAGCCAGAGG
ATGGATCCCGCTCTTGTTGAGCCTCTAA
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