mRNA_Ecto-sp13_S_contig9982.21630.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9982.21630.1
Unique NamemRNA_Ecto-sp13_S_contig9982.21630.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9982.21630.1 vs. uniprot
Match: D7G761_ECTSI (Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G761_ECTSI)

HSP 1 Score: 734 bits (1895), Expect = 4.350e-267
Identity = 369/375 (98.40%), Postives = 372/375 (99.20%), Query Frame = 1 
Query:    1 MAPGRISAAALLVLAQHLHVDAFSMNGFAGASVRPQQTRTASSASPSMVAAAPPSGKPMTKEMQRKMERLEQERIRKYVTPSETYANQPLSTPTSEHLIGEEMVKDDATASALADKCILEAERLFASDEGWTKVLEDDGIFVETKDVAGPYLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDETDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLMIKPDHSVAKGSNFVDNLRNQGIE 1125
            MAPGRISAAALLVLAQHLHVDAFS+NGFAGASVRPQQTRTASSA+PSMVAAAPPSGKPMTKEMQRKMERLEQERIRKYV P E YA+QPLSTPTSEHLIGEEMVKDDATASALADKCILEAERLFASDEGWTKVLEDDGIFVETKDVAGPYLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDETDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLMIKPDHSVAKGSNFVDNLRNQGIE
Sbjct:    1 MAPGRISAAALLVLAQHLHVDAFSVNGFAGASVRPQQTRTASSAAPSMVAAAPPSGKPMTKEMQRKMERLEQERIRKYVNPPEAYADQPLSTPTSEHLIGEEMVKDDATASALADKCILEAERLFASDEGWTKVLEDDGIFVETKDVAGPYLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDETDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLMIKPDHSVAKGSNFVDNLRNQGIE 375
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BLAST of mRNA_Ecto-sp13_S_contig9982.21630.1 vs. uniprot
Match: A0A0G4HAE1_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HAE1_9ALVE)

HSP 1 Score: 324 bits (831), Expect = 9.870e-105
Identity = 163/286 (56.99%), Postives = 214/286 (74.83%), Query Frame = 1 
Query:  259 NQPLSTPTSEHLIGEEMVKDDATASALADKCILEAERLFASDEGWTKVLEDDGIFVETKDVAGPYLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEWVTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALHPDRPGGSRYQTEVPLDE--TDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMCDSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKLLM----IKPDHSVAK-GSNF 1095
            N  +S P SE LIGEE+V DD +AS L+D+C+ E +RL  S++GW    E +G  VETK   G Y  SGV +VRG+G I+A  DDF+ +QVSREGFQ IDEYL NHR V++++W+T+P+ E+ KDYELM NRVEW YP ++REFVALD + RP ++LISKSALHP+RPGGSRYQ  + +D   + +VRAVQYY SKVEP+   KCLL MVTWGEMCD+Y+A+W+N+FN ++FITPK++RFR  M  G+ V+E SNIVN AW + KL      +KPD ++ K G++F
Sbjct:  140 NLGVSLPESEDLIGEELVTDDMSASLLSDRCMSELDRLIKSEDGWQSE-ELEGCVVETKKTHGAYGLSGVDIVRGVGEIDASADDFFEYQVSREGFQCIDEYLVNHRKVDQYKWLTRPELESGKDYELMMNRVEWRYPFKSREFVALDTVHRPERVLISKSALHPERPGGSRYQDALEVDPPGSPFVRAVQYYGSKVEPVGPNKCLLYMVTWGEMCDNYSAWWVNQFNKYLFITPKFRRFREAMS-GKTVWEESNIVNNAWDILKLKHNMGGLKPDRTILKNGADF 423
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9982.21630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G761_ECTSI4.350e-26798.40Imm downregulated 15 n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A0G4HAE1_9ALVE9.870e-10556.99Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9982contigEcto-sp13_S_contig9982:831..4184 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score740.7
Seed ortholog evalue3.3e-211
Seed eggNOG ortholog2880.D7G761
Model size1125
Hectar predicted targeting categorychloroplast
Exons2
EggNOG OGs2DZK2@1,2S73F@2759
Ec32 ortholog descriptionimm downregulated 15
Ec32 orthologEc-01_010920.1
Cds size1125
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.8439496-CDS-Ecto-sp13_S_contig9982:830..14271681464257.8439496-CDS-Ecto-sp13_S_contig9982:830..1427Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9982 831..1427 -
1681464257.8586829-CDS-Ecto-sp13_S_contig9982:3656..41841681464257.8586829-CDS-Ecto-sp13_S_contig9982:3656..4184Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9982 3657..4184 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9982.21630.1prot_Ecto-sp13_S_contig9982.21630.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9982 831..4184 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9982.21630.1

>prot_Ecto-sp13_S_contig9982.21630.1 ID=prot_Ecto-sp13_S_contig9982.21630.1|Name=mRNA_Ecto-sp13_S_contig9982.21630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=375bp
MAPGRISAAALLVLAQHLHVDAFSMNGFAGASVRPQQTRTASSASPSMVA
AAPPSGKPMTKEMQRKMERLEQERIRKYVTPSETYANQPLSTPTSEHLIG
EEMVKDDATASALADKCILEAERLFASDEGWTKVLEDDGIFVETKDVAGP
YLKSGVRVVRGLGAINADCDDFYNFQVSREGFQSIDEYLENHRNVERHEW
VTQPQYENMKDYELMTNRVEWAYPTQTREFVALDIIDRPRKILISKSALH
PDRPGGSRYQTEVPLDETDYVRAVQYYASKVEPLPDGKCLLRMVTWGEMC
DSYTAFWINKFNAHVFITPKYKRFRRVMEDGEEVFELSNIVNEAWKLPKL
LMIKPDHSVAKGSNFVDNLRNQGIE
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mRNA from alignment at Ecto-sp13_S_contig9982:831..4184-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9982.21630.1 ID=mRNA_Ecto-sp13_S_contig9982.21630.1|Name=mRNA_Ecto-sp13_S_contig9982.21630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9982:831..4184- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCAGGACGCATCTCGGCCGCTGCGCTGCTTGTTCTCGCGCAGCA
CCTCCATGTCGACGCCTTCAGCATGAACGGGTTCGCCGGAGCTTCGGTGC
GACCACAGCAGACAAGGACGGCCTCTTCGGCCTCCCCCAGCATGGTGGCC
GCCGCTCCTCCCTCGGGCAAGCCCATGACCAAGGAGATGCAGCGAAAGAT
GGAGCGCCTGGAGCAGGAGCGGATCCGCAAGTACGTGACCCCATCAGAGA
CGTACGCTAACCAGCCCCTCTCGACCCCTACGAGCGAGCACCTCATCGGG
GAGGAGATGGTCAAGGACGACGCTACTGCGAGCGCGCTCGCGGACAAGTG
CATCCTCGAGGCCGAGCGCCTGTTCGCTTCAGACGAGGGCTGGACCAAGG
TGCTGGAAGACGACGGCATCTTCGTGGAGACGAAGGACGTGGCCGGTCCG
TACCTAAAGTCCGGGGTGCGGGTGGTCAGGGGGCTGGGAGCGATCAACGC
GGACTGCGACGACTTCTACAACTTCCAGGTACGAGGAGGAGGAGAGCGCA
TGCACGCACACAGCAGCAAATCATGTTTTTTTTCCGAGAAACGATCATCG
GGGGGATATGTAGTGTTTGCAGCAGGGCGCCGATAGGGCGTACGGTACAA
GGTCAGCTGTACTATTTACGTGAGGCAGCGTGGTGTGTTGTCTTTGTATT
TCTGCGAATACGTGTGTCGGGTTGTTCTGCTCCTGTAAAATAACCACACA
TTGTGGCACACGCCCTTTTCGAGAGGCGGTGCATCCTTACATCCACTACC
TATGTATGTTCCTGTCAGCTGGTGTGTGTTGAAGACGACAGGCACAGCAG
ACGGTTCATTTTTCTCCCTCACCTCTAAATAGTTATCTCTCACGCGCGCA
TGCACAAGTACACAACTCGGCTCCCCGCTGGTGTGCCGATGCACCTTTTC
AACATCCCTATGCATATGAAACCCTATCACGCTTTGCATGCAAGGGCACG
AGCATTGTGTGTGTTCTTGTGGAACATTACCATATATTGGTATTCTACCC
TTCCCAAGCCCTTCCGGCATCGGATGTCAAAAAGATTATCCGCCCCCTCG
ACCGGTCGACACACCGACCTTCCTTTCCAATAATAGATACCAATATACGA
TGGGTTTGGGCTTATGAGGAAGATCGAATTCAAATACAAGAAGTAGAGCA
CTTCATTTCCACAAATCGGTATACACATGGACTGGTTTCCTACTGCCACA
TGATGCCTGTGTCCAACATGTAGATCGGGAAGGAGGTTGTTCGCGATGTC
CGAAGTGTTGCTCGAGTTTTGGCCTATACATTGGTCTCGCCTCCTCTCGT
CGCCTCGAAGTTGACGTATGCGGAGAAGTTGTCACCACGCGCTTTCATTG
TTGTTGATCTTACGCTTGCAGCAGTCGGTGGATGCCCAGGCAGCACAACA
GTACTAGCCAAGCTGGACCCATGCGGGCCGAGGAAAATATAAATCGAATC
ATGAAATATGAAAGGCCGGTGCATCCCTCGTTTTCACCGGATGAGAACGT
AAGGTTCGTCAGATTATTTGCCATGTCTCAAAATCCGTGCGAGACGACAA
TTTGTTCATGCTGAACGAGCTCCACTCCAACGTTGATGCTGGGTTAACCT
GAACGCGCCAAAGTTGTTGGTCGGTTGCACTACCAAGCCGTGAGCCGTGA
GTTTTCTTATGTATCTGTTGATTGGCGGGGCTGTATGTCGGTGTACACCG
AAGCTACGCAAGTGAAGAAATGCCACCGGGCGGGCTGGTGCACTTCGATA
TCAAGGAAACCGTCTGGATCTCTGGCGAGCCCTTTGAACCCCGAGCGTTC
AAGATGCTTTCTCCTTCCAAAACGTGCGGCAAGCGGACGTGGAGGCAGAA
ATCACACATCTGTTCGTTGTTTGCAGGAGTTGGGCGGTTCTCGTCTTCAG
GCCAGAATATCCTACAAGGGTACAATGTATAAGTAGGATACCTTGAGGCT
AGCACCCACAATCATAGACTACGCCCCATTTGGCCACAGGACAGCAAAGC
TGGCAAGTTGTAGCTCCATGACCGAAATTTCGTCTGGAACCAGTTGGAGG
AACACTTGCACCGTCCTACTGCTGTAGCGAGGGAAATGGCGCTCATCTAT
CTGCGGAATCAGGCAACTGACCCTCGATGCTGCTCTTGTCGAGCGATCGA
TTTATCTCGGTTGTTCCCTTTGTTCTGAAGAAAATGCATGTACTCTGGAT
GTTGAAGTGCTTTGCGAGTACGGGGAGTGACGTGGTGCGTGGAGCTGTAG
TTGCACCGTATGTAGCTCACTTCGACCTGTAGTGCAAGTGAACCGGCTTT
GTTTTACAGCAACGATCGTGCAGGCGCCGGCCGTGACACTTGCGGCTGTG
ACACTTGCGGACAGAGGGCCTTCACTAGCTTGGCGAACGCCCGCCACAAG
CGCCGCTCGGCAATACACACACATGTCGTATTTTGACTGGACCGCTTGCC
CTCGCCGTCCTCCATACACTATCCTAGCTCACTATAATAGATGTCATACC
ACACAACCCCCCACATCACGTGGAAACAACATTTGCTACAAGGGGTCTCT
CGCCCTGACCGTCCTCCACTCGCCATCCTCGCTCGCTGCAGCTGTGCAGA
CACAAATCCTCTGCAACCCACGACGCGGTCGTAACTGCTGTTACACCAGG
TTTTGCCTCAACATACGACGCTACAAACACAATTCTGCTGCTGCTATGCT
GTGCTAGGTCTCCCGCGAGGGCTTCCAGTCGATCGACGAGTACCTCGAGA
ACCACCGCAACGTGGAGCGACACGAGTGGGTAACGCAGCCGCAGTACGAG
AACATGAAGGACTACGAGCTCATGACAAACCGCGTGGAATGGGCGTACCC
GACCCAGACCCGCGAGTTCGTGGCCCTCGATATCATCGACCGACCGCGCA
AGATCCTCATCTCCAAGAGCGCTCTGCACCCGGACAGGCCGGGGGGAAGC
CGCTACCAGACCGAGGTGCCGCTGGACGAGACGGACTACGTCCGCGCTGT
GCAGTACTACGCCTCCAAGGTGGAGCCGCTGCCGGATGGCAAGTGCCTGC
TGCGCATGGTGACCTGGGGGGAGATGTGTGACAGCTACACGGCCTTCTGG
ATCAACAAGTTCAACGCACACGTGTTCATCACCCCCAAGTACAAGCGGTT
CCGCCGCGTTATGGAGGACGGGGAGGAGGTGTTCGAGCTCAGTAACATCG
TGAACGAGGCCTGGAAGCTGCCCAAGCTGCTCATGATCAAGCCCGACCAC
TCGGTCGCCAAGGGGTCCAACTTCGTGGACAACCTCCGCAACCAGGGCAT
TGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9982:831..4184-

>mRNA_Ecto-sp13_S_contig9982.21630.1 ID=mRNA_Ecto-sp13_S_contig9982.21630.1|Name=mRNA_Ecto-sp13_S_contig9982.21630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1125bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9982:831..4184- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCCAGGACGCATCTCGGCCGCTGCGCTGCTTGTTCTCGCGCAGCA
CCTCCATGTCGACGCCTTCAGCATGAACGGGTTCGCCGGAGCTTCGGTGC
GACCACAGCAGACAAGGACGGCCTCTTCGGCCTCCCCCAGCATGGTGGCC
GCCGCTCCTCCCTCGGGCAAGCCCATGACCAAGGAGATGCAGCGAAAGAT
GGAGCGCCTGGAGCAGGAGCGGATCCGCAAGTACGTGACCCCATCAGAGA
CGTACGCTAACCAGCCCCTCTCGACCCCTACGAGCGAGCACCTCATCGGG
GAGGAGATGGTCAAGGACGACGCTACTGCGAGCGCGCTCGCGGACAAGTG
CATCCTCGAGGCCGAGCGCCTGTTCGCTTCAGACGAGGGCTGGACCAAGG
TGCTGGAAGACGACGGCATCTTCGTGGAGACGAAGGACGTGGCCGGTCCG
TACCTAAAGTCCGGGGTGCGGGTGGTCAGGGGGCTGGGAGCGATCAACGC
GGACTGCGACGACTTCTACAACTTCCAGGTCTCCCGCGAGGGCTTCCAGT
CGATCGACGAGTACCTCGAGAACCACCGCAACGTGGAGCGACACGAGTGG
GTAACGCAGCCGCAGTACGAGAACATGAAGGACTACGAGCTCATGACAAA
CCGCGTGGAATGGGCGTACCCGACCCAGACCCGCGAGTTCGTGGCCCTCG
ATATCATCGACCGACCGCGCAAGATCCTCATCTCCAAGAGCGCTCTGCAC
CCGGACAGGCCGGGGGGAAGCCGCTACCAGACCGAGGTGCCGCTGGACGA
GACGGACTACGTCCGCGCTGTGCAGTACTACGCCTCCAAGGTGGAGCCGC
TGCCGGATGGCAAGTGCCTGCTGCGCATGGTGACCTGGGGGGAGATGTGT
GACAGCTACACGGCCTTCTGGATCAACAAGTTCAACGCACACGTGTTCAT
CACCCCCAAGTACAAGCGGTTCCGCCGCGTTATGGAGGACGGGGAGGAGG
TGTTCGAGCTCAGTAACATCGTGAACGAGGCCTGGAAGCTGCCCAAGCTG
CTCATGATCAAGCCCGACCACTCGGTCGCCAAGGGGTCCAACTTCGTGGA
CAACCTCCGCAACCAGGGCATTGAG
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