mRNA_Ecto-sp13_S_contig9980.21628.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9980.21628.1
Unique NamemRNA_Ecto-sp13_S_contig9980.21628.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9980.21628.1 vs. uniprot
Match: A0A6H5L0B2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L0B2_9PHAE)

HSP 1 Score: 561 bits (1446), Expect = 1.160e-194
Identity = 276/279 (98.92%), Postives = 278/279 (99.64%), Query Frame = 1 
Query:    1 DQLELHAPYNLWDCARTLLAAGEDQTVDFINAATIPTDFSEQYPDIIDGWLYLGWLVDEVEDMKYEQDVVGRYAAGLYLTEMNLRMSQVIEHVRSGYMSNVGRFPGMHITSGHYGTLKGIAGALDIDAIDGIPEYASHFAFELLYNGSANHLAGEEDFAIRIMYQDGSSTSDLNFAVMGQVYDGSGSISDFDEELSTLRDYDTGIMGWTQWDYLMDYQNAGKPVVYESVEEWCLDCLATAPDTCIAQELELMTQQWEEASVQAEQATADYKEADDGIGG 837
            DQLELHAPYNLWDCARTLLAAG+DQTV+FINAATIPTDFSEQYPDIIDGWLYLGWLVDEVEDMKYEQDVVGRYAAGLYLTEMNLRMSQVIEHVRSGYMSNVGRFPGMHITSGHYGTLKGIAGALDIDAIDGIPEYASHFAFELLYNGSANH AGEEDFAIRIMYQDGSSTSDLNFAVMGQVYDGSGSISDFDEELSTLRDYDTGIMGWTQWDYLMDYQNAGKPVVYESVEEWCLDCLATAPDTCIAQELELMTQQWEEASVQAEQATADYKEADDGIGG
Sbjct:  288 DQLELHAPYNLWDCARTLLAAGKDQTVNFINAATIPTDFSEQYPDIIDGWLYLGWLVDEVEDMKYEQDVVGRYAAGLYLTEMNLRMSQVIEHVRSGYMSNVGRFPGMHITSGHYGTLKGIAGALDIDAIDGIPEYASHFAFELLYNGSANHRAGEEDFAIRIMYQDGSSTSDLNFAVMGQVYDGSGSISDFDEELSTLRDYDTGIMGWTQWDYLMDYQNAGKPVVYESVEEWCLDCLATAPDTCIAQELELMTQQWEEASVQAEQATADYKEADDGIGG 566
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9980.21628.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L0B2_9PHAE1.160e-19498.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9980contigEcto-sp13_S_contig9980:1077..5351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score556.6
Seed ortholog evalue6.6e-156
Seed eggNOG ortholog2880.D7G1G5
Model size837
KEGG rclassRC00002,RC00017
KEGG koko:K07756,ko:K12483,ko:K19283
KEGG ReactionR09087,R10548,R11527
KEGG Pathwayko04070,ko04138,ko04144,map04070,map04138,map04144
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.acid phosphatase activity
EggNOG OGsKOG3720@1,KOG3720@2759
EC2.7.4.21,3.1.3.2,3.1.3.5
Cds size837
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9980.21628.1prot_Ecto-sp13_S_contig9980.21628.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9980 1077..5351 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.7249053-CDS-Ecto-sp13_S_contig9980:1076..12181681464257.7249053-CDS-Ecto-sp13_S_contig9980:1076..1218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 1077..1218 -
1681464257.7368817-CDS-Ecto-sp13_S_contig9980:1715..19101681464257.7368817-CDS-Ecto-sp13_S_contig9980:1715..1910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 1716..1910 -
1681464257.747301-CDS-Ecto-sp13_S_contig9980:2644..27431681464257.747301-CDS-Ecto-sp13_S_contig9980:2644..2743Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 2645..2743 -
1681464257.7580602-CDS-Ecto-sp13_S_contig9980:3245..34041681464257.7580602-CDS-Ecto-sp13_S_contig9980:3245..3404Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 3246..3404 -
1681464257.7688324-CDS-Ecto-sp13_S_contig9980:4132..42281681464257.7688324-CDS-Ecto-sp13_S_contig9980:4132..4228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 4133..4228 -
1681464257.7798483-CDS-Ecto-sp13_S_contig9980:5205..53511681464257.7798483-CDS-Ecto-sp13_S_contig9980:5205..5351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9980 5206..5351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9980.21628.1

>prot_Ecto-sp13_S_contig9980.21628.1 ID=prot_Ecto-sp13_S_contig9980.21628.1|Name=mRNA_Ecto-sp13_S_contig9980.21628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
DQLELHAPYNLWDCARTLLAAGEDQTVDFINAATIPTDFSEQYPDIIDGW
LYLGWLVDEVEDMKYEQDVVGRYAAGLYLTEMNLRMSQVIEHVRSGYMSN
VGRFPGMHITSGHYGTLKGIAGALDIDAIDGIPEYASHFAFELLYNGSAN
HLAGEEDFAIRIMYQDGSSTSDLNFAVMGQVYDGSGSISDFDEELSTLRD
YDTGIMGWTQWDYLMDYQNAGKPVVYESVEEWCLDCLATAPDTCIAQELE
LMTQQWEEASVQAEQATADYKEADDGIGG
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mRNA from alignment at Ecto-sp13_S_contig9980:1077..5351-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9980.21628.1 ID=mRNA_Ecto-sp13_S_contig9980.21628.1|Name=mRNA_Ecto-sp13_S_contig9980.21628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9980:1077..5351- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAACTGGAGCTGCACGCCCCTTACAACCTCTGGGATTGTGCGAGGAC
TCTGCTGGCGGCAGGAGAGGATCAGACCGTTGACTTCATCAATGCCGCGA
CGATACCCACGGACTTTTCGGAGCAGTACCCGGATATTATCGATGGGTGA
GTGGAAGCGGCAAGAGGGGCGTGGTGGCGGCAGAAACAGAGACAACAATA
AACACGGACAGAGGGCTACATAAATAGTGGAGGAGATGGTGTCTTTGGGT
ATCTTTGCATGTTATTGGTATGGTACATATGCCTATGCATTTTTGTTTCC
TGGGCAGCCGGTCAGACAAAAAAGGACAAGAAAGTTGATCAGCGCTGCCT
TTCACCTCTGCTTCATCTGAAGGAGAATATATCGTAGCCGCTGAAACAAG
GGGGTGGGTGTACTCATACTCGTGCATGCCGCAGGCGTCAAACGAAGGGG
GAGGCGGCGCATAGGAACCGTAGAACACCCTTACCAGTTGTTTTCATGTA
CCTATGCTCAGCGCTTGCAGTACGGTGATGTTAAGGCACAGAACAAGAAT
ATCGACGGAGTTTTTTTTTTCCTATCACTTTTATGTCAGCGCTCACAGCT
TCAAAGAATTTCTGGCGGGTGGGAGCTCCGATCGGCGGTCACACGGAAGG
GTTGCTCTCCCTGAGTCTACCCAGACCGTTTTTTTTAAGTAGATAATGGT
CTATAACGATAACGATGGTGTAGTCCCATCTTTGACTTCGGTAGTACATC
AAGACGTTGTTGATGAGCGCGCGTGAGTAGTTGTTTTGCTCGCTTGTTCA
CAATTCGACGAAGATGGGAGGCTCTTGGTGCATATTTTTAGTACCTGCCG
CGGGCCCTGTACCTCCCGATGCCCTCATGGACGCTGTACCCTTCAATACG
CTCGTGGATGCTGCACCTTCCATCGTTCTCATGGATCGTGTACCTTCCGT
TGTCCTCATGGATGGAGTACCTTCCATCGTCCTCATGGGTGCCATACCTT
CCACTGTCCTCACCTTCCATCGTCCTCATGGATGCTGTTCCTTCCACTGT
CCTATGGGCGCCGGGGGCTGTACCTTACAATGTGTTCGCGGACGCTGTAC
GCTGTACCCTCCGGTGTCCTCAGGTGGCTGTACCTTGGGTGGCTTGTGGA
CGAGGTGGAAGACATGAAGTACGAGCAAGACGTCGTCGGCCGCTACGCTG
CAGGCCTCTACCTCACCGAGTGAGTGCAGTCGTTATGCAGCTCCTGTTGA
TGTTGCTGTGGGTGGTGCTGTTGCTGTCCCGACGCTGCTGTTGATGTTTT
CGTGATGGTGGTGCTGTCGCTGTTGCCTGGTTGCTGCGGGTGTTGTTGTG
GTGTTCTGGAGGAAGGTGCTGTGAGGTGAAGCCTTTGTTGTCGTAGTTTT
AAGGATGCTAAACAAGTTGTCGCTGCTGTTGTTGAGGTTGTGGGGATGGT
GGTGGTGATACTGAGTTGTACTGGTGAACCACCTGTGGCGCCTTAAACGT
GCATGCATGCATGCTTCCAGCAATCAGAGGGTGCTGGAAACCACGCAGTT
TTGTGAGTTTGTCGCTACCTCAGGCTGTTCGACGTGGTGGTACCCGTATC
TCACCCTGCTCGGTGAGCTCAGCCCTAGATCTACGGAGATCTACCGGGGT
TCGTGTATCATGTTGATATGTGTGTTAGGTGAGGGCTGCTTATCGTCAGA
GACTGCAGAGGAACGTTTGACTCAGGACCTCGGTTATTGACGAGTGGGCA
GGGCATGCTAACCCACGTACGGATACATATGCCAACATGATGAACGGAAA
CCCCCTAGATCTCCGTAGATCCCTGTCACTGTAAGTGTGCTGAGTACACC
TAATACGTCCTACCTAGATGCAATGCCCCCGTCCCATGGTTCACCTGGAG
AAAACACTGCCTGAACAACCCCCCCCCTTGTGTGCTTGTTGCTCCAGAAT
GAACCTCCGCATGTCACAGGTGATCGAGCACGTGCGTAGCGGCTACATGA
GCAACGTGGGCCGCTTCCCCGGGATGCACATCACGTCCGGTCACTACGGG
ACTCTCAAGGGCATCGCCGGGGCTCTCGACATCGACGCTATCGATGGCAT
TCCTGAGTGAGTTTGTGGTCGCAGGAGACGTTGGTGTTTTTTGGTGGTGG
TATGTGTGTATAGGCGACAGTCTTTTCGGGAGTCCTGGTTCTCGCTGTGG
ACGTTACAATATAGCATGACTTCTTTTTTGTTGTTATTTGACGCCAAGCA
TTTTCCTTGCTGCGAACGATTCAATGTGGTGGAGGTCCATATTTAGTGCC
GTTGCTGGTGTTTTTGGCGGGCACACACTGAAATTCCAAGTCATCGTTAG
TAATTCGAATAGTGCCGGTCCGGATAGTGCCGGTGAGTTTTCCGGGCATG
TACAGGCACTAAACAAGTAACCCCACTGAAGCAATTGTTTTTCTTCGCGA
GTCCTTTTCCTTGCTGTTGACGTTAGGTTATGTTGTGTCCTCACTTTAAA
TCAGCTCTCTCGGCGTATGTGCCGTCTGCTCCAGCCAGTGGTCACAAAGA
AGGGTTCAATAGCTCATTTTTTTTTTTTCGTGAACCCTTGTTGTTGGCGT
GGGCACAGGTACGCTTCCCACTTTGCGTTCGAGCTCCTGTACAACGGATC
TGCCAACCATCTGGCGGGGGAGGAAGACTTCGCGATCCGAATCATGTACC
AGGATGGGTGAGCTGTTCTTGTCTTACCTTGCTCCTTGTATAGCAGCAGC
TCTGTGTGTGGGTGTTGATTGTGCTGACGAATCGGTCAGAATTATGTTGA
AAGACGGGTGAGCTGCTGTTGTGTGAACCTTCCCCCTTGGTTTGTGTGTG
GGTGCTCATCGTGCTGACGTAGCGATCAGAATCATGTTCCAAAACACGGG
TGAGATGTTGTTGTCTTTTGTTGATACAGTAGTAGCAGCTCTTGCGTCGT
GGAAGCTTATCGTTCTGACCACGAATCGTTTTCCAAGACGGCCGAGCTGA
TATCTCAATATTAGTGCTCGTCGTTCTTGTTGTGGCGTTCCCTCTCTGGG
TAATCACACTGCAGGAAGAAGGGGTAGTGACATGCACGAGGTATTGATGG
TGTGGCGTTATTTTTTCACCGTAGATGTAGTTGTCGGTGTTGATTTTTTT
AAGTTTGGTGCTGGTGTCGATGTGATCGGGGTTGTATATGGACAAGACGA
TCTGGCTGCCTAGCCCCACCAAGTCCTCAGTATGCCTGTCCATGGCCCCC
CCTCCATCCTTGCTGTCCTATTCTGCGGTACCCCCTGTCCCTCACCAAGC
TTACCTCCTGCTGAATGCGCGACCCCTACCCCCCAACCTGGCGCGCCAAT
CAACATCGAAACGCTCGTCCCTCATCAAGCTTGCCTCTTCCTGCATGCAC
AACCCTCCACCCCCCAACCTTTTCGTTTACTTCGGAAAAAGTTCGAGCAC
TAGCGACCTGAACTTCGCCGTGATGGGCCAAGTGTACGATGGCTCCGGGT
CCATCTCCGACTTCGACGAAGAGCTGTCGACGTTGAGAGATTACGACACG
GGCATCATGGGGTGGACCCAGTGGGACTACCTCATGGACTACCAAAACGC
GGGGAAACCTGTTGTCTACGAATCTGTCGAGGAATGGTGAGTAAAATATA
TATTTTTACGGAATACACGTTCAACACACAGAGAGTAGCCGTTCGGGATG
TATCCACAGCAGTCGAAGGGGATGTATTGCAGTCTTTTCAGTAAGCGGAA
GAAAAAAACGGAAAAAACGGCTGGATAGATGCCTTTTTTTGTTCTGACGG
TGTTTTTCTGGCGTTGGAGCAGGCGTCATCTACGACTTAACAGTCCAGAG
GATTTTTGGATTGCTTTGTCCTTGCGACTCTCTGTTGTTTGGGAGGGCAA
GAGGGAACACGGATTCTAGCAGGGGGTCCCGCCGACATTGTCCTTTGTCA
ACACATCCTCCCCCCCTGCTCCAGCGGCTTCCGTACCACACTTTGCCAAA
GTAGGAAGGCACGATTGGCCATCAATGATGAATCCTGTGGAAACAACGCT
CCGTCCTTTTGTGGACGCTAAGGCATGTAAAACATAAAGAGTACCCCCCC
CCCCCCCCCCCCCCCCGCCCGCCCGCCCTACAGGTGCCTCGACTGTCTTG
CCACCGCTCCCGACACTTGCATTGCCCAGGAGCTAGAGCTGATGACACAG
CAGTGGGAGGAGGCTAGCGTTCAGGCTGAACAGGCGACGGCGGATTACAA
GGAGGCTGACGACGGTATCGGAGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9980:1077..5351-

>mRNA_Ecto-sp13_S_contig9980.21628.1 ID=mRNA_Ecto-sp13_S_contig9980.21628.1|Name=mRNA_Ecto-sp13_S_contig9980.21628.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9980:1077..5351- (Ectocarpus species13 EcNAP12_S_4_19m)
GACCAACTGGAGCTGCACGCCCCTTACAACCTCTGGGATTGTGCGAGGAC
TCTGCTGGCGGCAGGAGAGGATCAGACCGTTGACTTCATCAATGCCGCGA
CGATACCCACGGACTTTTCGGAGCAGTACCCGGATATTATCGATGGGTGG
CTGTACCTTGGGTGGCTTGTGGACGAGGTGGAAGACATGAAGTACGAGCA
AGACGTCGTCGGCCGCTACGCTGCAGGCCTCTACCTCACCGAAATGAACC
TCCGCATGTCACAGGTGATCGAGCACGTGCGTAGCGGCTACATGAGCAAC
GTGGGCCGCTTCCCCGGGATGCACATCACGTCCGGTCACTACGGGACTCT
CAAGGGCATCGCCGGGGCTCTCGACATCGACGCTATCGATGGCATTCCTG
AGTACGCTTCCCACTTTGCGTTCGAGCTCCTGTACAACGGATCTGCCAAC
CATCTGGCGGGGGAGGAAGACTTCGCGATCCGAATCATGTACCAGGATGG
TTCGAGCACTAGCGACCTGAACTTCGCCGTGATGGGCCAAGTGTACGATG
GCTCCGGGTCCATCTCCGACTTCGACGAAGAGCTGTCGACGTTGAGAGAT
TACGACACGGGCATCATGGGGTGGACCCAGTGGGACTACCTCATGGACTA
CCAAAACGCGGGGAAACCTGTTGTCTACGAATCTGTCGAGGAATGGTGCC
TCGACTGTCTTGCCACCGCTCCCGACACTTGCATTGCCCAGGAGCTAGAG
CTGATGACACAGCAGTGGGAGGAGGCTAGCGTTCAGGCTGAACAGGCGAC
GGCGGATTACAAGGAGGCTGACGACGGTATCGGAGGC
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