mRNA_Ecto-sp13_S_contig9972.21621.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9972.21621.1
Unique NamemRNA_Ecto-sp13_S_contig9972.21621.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6H5J947_9PHAE (PAP2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J947_9PHAE)

HSP 1 Score: 694 bits (1792), Expect = 7.550e-243
Identity = 339/355 (95.49%), Postives = 342/355 (96.34%), Query Frame = 1
Query:    1 QYVCPHVGNADPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNGIGANGSINGGTGYGHQRHRPHSNAYVYHNLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLMPSGPS 1065
            QYVCPHVGNADP RRVGKTALPLWLLWVLGFQHIRRHIL MLQPPLARVMLNGEIFISVSVLMTICANFSTMVH PR PLFDVGFYL+PAQGVDSPWRPLSDILTLALPGLAF RTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALS YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFR+APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNG+G  GSINGG GYGHQRHRPHSNAY Y NLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLM  GPS
Sbjct:  272 QYVCPHVGNADPDRRVGKTALPLWLLWVLGFQHIRRHILGMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHQPRLPLFDVGFYLVPAQGVDSPWRPLSDILTLALPGLAFLRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSEYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNGVGVIGSINGGMGYGHQRHRPHSNAYGYQNLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLMLPGPS 626          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: D8LG44_ECTSI (PAP2_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG44_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 6.860e-115
Identity = 166/172 (96.51%), Postives = 168/172 (97.67%), Query Frame = 1
Query:  271 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ 786
            QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALS YD PRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFR+APRLVYA VK+ GFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ
Sbjct:   30 QGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSGYDRPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRRAPRLVYALVKSTGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQ 201          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: D7FRP1_ECTSI (PAP2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRP1_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 3.650e-87
Identity = 131/246 (53.25%), Postives = 171/246 (69.51%), Query Frame = 1
Query:   55 TALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDG 792
             ALPLW LWV G    RR I   + P +  +  N E+   V + MT+  NF+T VH P  PLFD+GF +IP Q +DSPWRP+SD LT  LPG+A  R+LF DR+ R   +  WFRL+S+ Y++RCL + LTSLPGPAPHC   + Y+PP  WH++ATR+G ++GDF +CGDLLFSGH A+TT++ML+  KS+R      Y   KA G +YLLTM T  IAGRKHYTVD+ L +++A LTFFRF++G
Sbjct:  121 VALPLWGLWVAGLFCYRRMIYKRIPPDMVALFRNAEVLALVVLFMTVTVNFATYVHTPAEPLFDIGFLVIPEQTLDSPWRPVSDTLTALLPGIALLRSLFMDRKQRVTLVTSWFRLVSIVYMLRCLTIGLTSLPGPAPHCRDKALYNPPVSWHEIATRMGVMVGDFSSCGDLLFSGHAAFTTLTMLIFVKSWRG--HATYRVWKALGVVYLLTMCTLAIAGRKHYTVDITLGILVASLTFFRFENG 364          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A7S3K1H4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1H4_9STRA)

HSP 1 Score: 214 bits (544), Expect = 1.200e-60
Identity = 124/264 (46.97%), Postives = 160/264 (60.61%), Query Frame = 1
Query:   40 RRVGKT------ALPLWLLWVLGFQHIRRHILA--MLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAF-FRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCE----ALSAYDPPRGWHDVATRLGP-LMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQD 789
            RRV K       A   W  W+     + R +L   ++  P+ +V  + E+F +  +LMTIC NF++ +H P   LFD+GFYLIP   +   + PLSD LT ALP LAF +  L  DRR RCR I DWFR+M+V YL RC+  T+TSLPGPAPHC     A  AY PP  WH++AT L   L G   TCGDLLFSGH A TT++ LLL +  R+  + V    KA G  Y+L +    +A RKHYTVD+AL  +I  LT+FRF+D
Sbjct:  150 RRVAKNTASHAAAFAAWTGWLAFILILERPLLKRRLMPAPIFQVCRHAELFATAGLLMTICTNFASYLHSPGHRLFDLGFYLIPQ--ISKKFYPLSDALTGALPVLAFSYLCLVLDRRRRCRAITDWFRMMTVVYLFRCITSTMTSLPGPAPHCAPSAYAKGAYLPPSTWHEIATSLSTGLTGG--TCGDLLFSGHAAMTTITTLLLVRQQRRHGQKVERVAKAIGCTYILIVCIFALASRKHYTVDLALGTLIGSLTYFRFRD 409          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A5D6Y3E4_9STRA (PAP2_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3E4_9STRA)

HSP 1 Score: 212 bits (540), Expect = 1.230e-60
Identity = 121/271 (44.65%), Postives = 163/271 (60.15%), Query Frame = 1
Query:   31 DPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKS----FRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLPR-RHPPRP 822
            +P  R+   AL  W    L   H+R  + A     +  +  + EIFI+VS+ M    N +  +H P   PL D+GF L+P Q +DS WRPLSD+LT  +P L   +TLF  R  RCR IA +FR+ SV+Y +R L V+LTSLPGPAPHC   SA Y PP+ W D+ TR+GP+ G F +CGDL+FSGH A+T  ++LL  ++    F +  RL +     AG  +LL +A   +AGRKHYTVDV L VV++ L +F F+   LP   HP  P
Sbjct:   88 EPRARLQNGAL--WSALTLALLHVRSAVRARCGADVRALADHLEIFIAVSLAMVFSTNIAFYLHAPAAAPLRDLGFMLVPEQALDSKWRPLSDVLTAVVPVLGLLQTLFMTRANRCRVIATFFRVASVSYALRLLTVSLTSLPGPAPHCRPGSALYAPPQTWIDIVTRVGPMYGQFNSCGDLIFSGHMAYTNSALLLYLRTMDRYFARFSRLRWL----AGTAFLLALALLCVAGRKHYTVDVVLGVVVSSLVYFHFEYSWLPACAHPQHP 352          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: K3X811_GLOUD (PAP2_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X811_GLOUD)

HSP 1 Score: 210 bits (534), Expect = 1.570e-59
Identity = 108/247 (43.72%), Postives = 156/247 (63.16%), Query Frame = 1
Query:   67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801
            LW ++ +     R  + A     +  +  + EIFI+VS+ M    N +  +H P   PL D+GF L+PAQ VDSPWRP+SD+LT  +P +A  +T F  R  RCR I+ +FR+ +V+Y +R L V+LTSLPGPAPHC   S  Y PP+ W D+ TR+GP+ G+F +CGDL+FSGH A+T  ++LL  ++  Q            G ++LLT+AT  ++GRKHY+VDV L ++I+ L FF F+ G +P
Sbjct:  135 LWSMFTVSLLSFRSAVRAKCGDDVRALADHAEIFIAVSLAMVFSTNIAFYLHAPSDTPLRDLGFMLVPAQAVDSPWRPVSDVLTAVMPVVAMVQTYFMTRANRCRVISTFFRVATVSYALRMLTVSLTSLPGPAPHCRPGSGLYFPPQTWIDIVTRVGPMYGNFNSCGDLIFSGHMAYTNSALLLYLRTMDQHFVRFSKLRWTLGAVFLLTLATLCVSGRKHYSVDVMLGIMISTLVFFHFEHGWVP 381          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: H3GCQ3_PHYRM (PAP2_C domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCQ3_PHYRM)

HSP 1 Score: 207 bits (526), Expect = 1.210e-58
Identity = 107/249 (42.97%), Postives = 157/249 (63.05%), Query Frame = 1
Query:   67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPR-PPLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801
            +WLL+   F ++RR + + +   L  +M + EIF+++S++M    N +  +H P   PL D+GF LIP QG+ S WRP+SDILT  +P     +T+   R  RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S  Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T  ++LL  ++  +  A R       A G  YL T+A   IAGRKHYTVDV L ++I+ L FF F+    P
Sbjct:  108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNIAFYLHVPAVTPLKDLGFMLIPEQGLHSAWRPVSDILTAGVPVTFLLQTMVMTRPNRCRIVSSFFRIATICYFLRMLSVSVTSLPGPAPHCRAGSPDYFPPKTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMAYLATLAALCIAGRKHYTVDVVLGLIISALVFFHFEHSWTP 356          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6A3DVY3_9STRA (PAP2_C domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DVY3_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.390e-58
Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1
Query:   67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801
            +WLL+   F ++RR + + +   L  +M + EIF+++S++M    N +  +H P   PL D+GF LIP QG+ S WRP+SDILT  +P +   +T+F  R  RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S  Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T  ++LL  ++  +  A R       A G  +L+ +A   IAGRKHYTVDV L ++I+ L FF F+    P
Sbjct:  108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNVAFYLHVPATTPLKDLGFMLIPEQGLHSKWRPVSDILTAGVPVVFLLQTIFMTRPNRCRIVSSFFRIATICYFLRMLTVSVTSLPGPAPHCRAGSPDYFPPQTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMTHLMVLAALCIAGRKHYTVDVVLGLIISTLVFFHFEHSWTP 356          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A6A3N5Y1_9STRA (PAP2_C domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3N5Y1_9STRA)

HSP 1 Score: 206 bits (524), Expect = 2.390e-58
Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1
Query:   67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSFRQ--APRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801
            +WLL+   F ++RR + + +   L  +M + EIF+++S++M    N +  +H P   PL D+GF LIP QG+ S WRP+SDILT  +P +   +T+F  R  RCR ++ +FR+ ++ Y +R L V++TSLPGPAPHC A S  Y PP+ W D+ TR+GP+ G++ +CGDL+FSGH A+T  ++LL  ++  +  A R       A G  +L+ +A   IAGRKHYTVDV L ++I+ L FF F+    P
Sbjct:  108 IWLLFAGTFFYVRRLVRSRVDVHLRGMMDHAEIFVAMSLVMVFSVNVAFYLHVPATTPLKDLGFMLIPEQGLHSKWRPVSDILTAGVPVVFLLQTIFMTRPNRCRIVSSFFRIATICYFLRMLTVSVTSLPGPAPHCRAGSPDYFPPQTWIDIVTRVGPIYGNYNSCGDLIFSGHMAYTNSAVLLYLRTLDRNFAGRTASKIRWACGMTHLMVLAALCIAGRKHYTVDVVLGLIISTLVFFHFEHSWTP 356          
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Match: A0A0P1APX3_PLAHL (Transmembrane protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APX3_PLAHL)

HSP 1 Score: 204 bits (519), Expect = 3.320e-58
Identity = 106/249 (42.57%), Postives = 159/249 (63.86%), Query Frame = 1
Query:   67 LWLLWVLGFQHIRRHILAMLQPPLARVMLNGEIFISVSVLMTICANFSTMVHHPRP-PLFDVGFYLIPAQGVDSPWRPLSDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTSLPGPAPHCEALSA-YDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTTVSMLLLTKSF-RQAPRLVYAFVK-AAGFLYLLTMATCTIAGRKHYTVDVALAVVIAGLTFFRFQDGMLP 801
            +WLL+   F +IRR + + +   L  VM + EIF+++S++M    N S  +H P   PL D+GF +IP Q + S WRP+SDILT  +P +   +T    R  RCR ++ +FR++++ Y +R L V++TSLPGPAPHC   S  Y PP  W D+ATR+GP+ G++ +CGDL+FSGH A+T  ++LL  ++  R  P  + + ++ A G  YL+ +A   IAGRKHYTVDV L ++++ L FF F+    P
Sbjct:   55 IWLLFAGTFFYIRRLVRSRVDANLRGVMDHAEIFVAMSLVMVFSVNISFYLHVPATTPLKDLGFMIIPEQKLHSKWRPVSDILTAGMPVIFLLQTAVMTRPNRCRVVSSFFRIVTICYFLRMLTVSVTSLPGPAPHCRVGSHDYFPPTSWIDIATRVGPIYGNYNSCGDLIFSGHMAYTVSAVLLYLRTLDRNFPGRMASKIRWACGLTYLIILAVLCIAGRKHYTVDVVLGLIVSTLVFFHFEHSWTP 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9972.21621.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J947_9PHAE7.550e-24395.49PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LG44_ECTSI6.860e-11596.51PAP2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FRP1_ECTSI3.650e-8753.25PAP2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7S3K1H4_9STRA1.200e-6046.97Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A5D6Y3E4_9STRA1.230e-6044.65PAP2_C domain-containing protein n=1 Tax=Pythium b... [more]
K3X811_GLOUD1.570e-5943.72PAP2_C domain-containing protein n=1 Tax=Globispor... [more]
H3GCQ3_PHYRM1.210e-5842.97PAP2_C domain-containing protein n=1 Tax=Phytophth... [more]
A0A6A3DVY3_9STRA2.390e-5842.57PAP2_C domain-containing protein n=15 Tax=Phytopht... [more]
A0A6A3N5Y1_9STRA2.390e-5842.57PAP2_C domain-containing protein n=2 Tax=Phytophth... [more]
A0A0P1APX3_PLAHL3.320e-5842.57Transmembrane protein n=1 Tax=Plasmopara halstedii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9972contigEcto-sp13_S_contig9972:1..5119 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score282.0
Seed ortholog evalue4.9e-73
Seed eggNOG ortholog2880.D7FRP1
Model size1302
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.sphingomyelin synthase activity
EggNOG OGsKOG3058@1,KOG3058@2759
Cds size1302
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9972.21621.1prot_Ecto-sp13_S_contig9972.21621.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9972 1..5119 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464257.1555068-CDS-Ecto-sp13_S_contig9972:0..5161681464257.1555068-CDS-Ecto-sp13_S_contig9972:0..516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 1..516 -
1681464257.170511-CDS-Ecto-sp13_S_contig9972:1198..13691681464257.170511-CDS-Ecto-sp13_S_contig9972:1198..1369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 1199..1369 -
1681464257.181475-CDS-Ecto-sp13_S_contig9972:1857..20681681464257.181475-CDS-Ecto-sp13_S_contig9972:1857..2068Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 1858..2068 -
1681464257.1934786-CDS-Ecto-sp13_S_contig9972:2828..29591681464257.1934786-CDS-Ecto-sp13_S_contig9972:2828..2959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 2829..2959 -
1681464257.2038567-CDS-Ecto-sp13_S_contig9972:3823..39101681464257.2038567-CDS-Ecto-sp13_S_contig9972:3823..3910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 3824..3910 -
1681464257.2150366-CDS-Ecto-sp13_S_contig9972:4474..45531681464257.2150366-CDS-Ecto-sp13_S_contig9972:4474..4553Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 4475..4553 -
1681464257.2261548-CDS-Ecto-sp13_S_contig9972:5012..51191681464257.2261548-CDS-Ecto-sp13_S_contig9972:5012..5119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9972 5013..5119 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9972.21621.1

>prot_Ecto-sp13_S_contig9972.21621.1 ID=prot_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=434bp
QYVCPHVGNADPGRRVGKTALPLWLLWVLGFQHIRRHILAMLQPPLARVM
LNGEIFISVSVLMTICANFSTMVHHPRPPLFDVGFYLIPAQGVDSPWRPL
SDILTLALPGLAFFRTLFFDRRTRCRFIADWFRLMSVTYLMRCLCVTLTS
LPGPAPHCEALSAYDPPRGWHDVATRLGPLMGDFRTCGDLLFSGHTAWTT
VSMLLLTKSFRQAPRLVYAFVKAAGFLYLLTMATCTIAGRKHYTVDVALA
VVIAGLTFFRFQDGMLPRRHPPRPASGAPSPNGIGANGSINGGTGYGHQR
HRPHSNAYVYHNLHQQPHGNGTGINGGSGSVRPHRQHKRKLTAEAAEDLM
PSGPSSSNRGGGVSGSGAGAAKRGGGGVGDATPPTLSASALAAAAGEDMR
PSASSSSVTGLLTTATNRGVGGGGGGGDGDRGGG
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mRNA from alignment at Ecto-sp13_S_contig9972:1..5119-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9972.21621.1 ID=mRNA_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9972:1..5119- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACGTGTGTCCCCACGTCGGGAACGCGGACCCTGGCCGACGGGTGGG GAAGACGGCGCTGCCGCTGTGGCTGCTGTGGGTTCTGGGCTTCCAGCACA TACGAAGGTGGTTCTTTTTTTCGTCGTGCCGTACTGTGTCGTGCGATGTT GTGTTATGGTAGCCGGGTGCTCCGTTTTGAAGACACTATCAGCAAGCGAG TGGCAGCACCGTTCGGTTTGCTCGTGTCTTGTCGTGTCGGCGCAGGGATT ACGCCTGTGGTTCACGTGGGCGTGAAGGCGCTCCTTGTGTTGCTCTCTCG TCTGATCTGAAACTGAAAGCTTAGTGCATGTCTTGGTGCGGGTGTGATAA CCGTCGTATGCACGTTATCGCGTTGTTCTTGAAGACGACTACACTAGGTG GGAGTAGCAGCTACATCTGAACAAATCGGGCAGTTAGGTACGTTGCATCT GTGGAAGCGTTGGCGTGGTCGAACTAGCGCCTGGGTAGCTCGCGTTGCTG TTTGTAACTCCCTTCTCTTCTCTCCTCTCTCTCTTTTTCTTGTGCATATG GTGTTGCAACAAGCAGGCATATTTTGGCCATGCTGCAACCGCCCCTAGCG AGGGTCATGCTCAACGGCGAGATCTTTATCAGCGTGAGCGTGCTGGTGAG TTGCGACGCACCACCGGGGGGGGGGGGGGGGGTTGTCTGTCCTCCCTTGG TTGTCGAGGTGGTATTGTATTGTCATGATTCACCGCTTGTCAATTTCGAG CTACATTACTCACAGCTATGTACACATGGCAGAGCCGTCGGTCGGTCTGG TCTCTTTACCAAGTGTCGTCTGTCTGCTGCAATGCTCGCCTCTCGTTGGC TCTTCGTTCAGCTTGTAGTGCTGCGAAGCGACCGTACAACATTCACTGCC TACCTACTCTGGTATCCCCAAGGGTAGTCACAATATTTTCCGATCCGCGC GGCGAAGTCTGGGCTACGGGCCACGACCACAACCCCCCTCCCCCTTCTGC CCCATCCTCTCGAGGATGCATGGTCTATTGTCTAACCGCTAAAGCATGAG TACNNNNNNNNNCCCCCCCCCCCCCCCGGATTCATTTTCTTTTTTTTCAC CCCCAAAAAAACAGACCCCCCCCCCCCCCCCCCCCCCCTCCCTCCTGCTA CGCACACGTCCAACCTTGCCTCGTCTTGCGCGCACGCGCACACGCTTTGC TTCTTGCAGATGACGATATGCGCGAACTTCAGCACCATGGTGCACCACCC CAGACCCCCTCTGTTCGACGTCGGGTTCTATCTCATCCCGGCACAGGCGC GTTCGTCACTCATACATGCATGCCTCCCCCTCCCCCCGTTCTGTTTTTGT AGTCTGTGTCGTTGGCTTTTCTCTCAATTTGTCGGGGGTCTTGTTTTTTT TTTCTGGCCAAGCGGTAGCCCCGGTCGCCGCCGGCCGTGCCGCCGACGAT TCCACTCGCTGGAAATGGCGACGGTTTCGGGCGTGGCACGGGTCTCGGAA GGGAGTGCACCAACCGAAGGCTAGATATTTTCACGGCTCGTTTCCTGCTC TCGGCCTGTAGGTCGGTAGATGGTGCCCTTGCGGTGCCTGTGTATGAGGT ATCAAGACCATGAGGGGCGCGAGCCGGTAATTCTCAACTCAATGCCAAAA TCCCTGCGGGGTGGTTGACACCACGGCTTCGTCCCATACAACTGTCTGGC TAGATAATACTGATGGCATTCTGTAGTAAGAAAGGAGATGGGGGAAGGTG CAATCATCATCCTCTGCACCGTAGCTAGGTACGGGGCGCGGGGGAGGGCG TTGCATTGAGTCAGTCGCATTCGTGCTAGACTCCCTGCTTGCTCGCAGAC AGCAGTAATAGAGTAATGGTGCGAGATGAAGACGACGACGACTACCACAA GGGGAATATTCGCCAACCAACGGCGTTAGACCTCAGCGGGGGTAAGAAGT GCGTTTTGTTCGGCGCGGTGGTGTACTATCACACCAGTATTTGGTATTTG TGGCTGCACTGGGAAAACTCTATTCGGCAAATTCACCTGCCAATCGCCGT GCCTCCGTTTGTACAGTGCAGCCTATTGATTAGGGTTATGTTGTGGCGCA TGCCGCCCCCGCCAAGTCTGTGCGCTGAGTACGCCTCCTCCTCTCGCTCG GTCTGTGTAGGGGGTAGATAGCCCGTGGAGGCCCCTGAGCGACATCCTCA CGCTCGCTCTACCGGGGCTCGCGTTCTTCAGAACACTGTTCTTCGACCGC CGGACGAGATGTCGCTTTATCGCTGATTGGTTCAGACTCATGTGAGTTGT TATTGCTTGCTCCTCCTTCCTCCCTTCGTGGCTTGATGAGCTTGATTGAT TGTGATTGGTCCACAATCATTTGTGTGAGACTTGTGCGTGGTTGTGATTT TGTTGTGGTCATCCGGCCCGGCGTCGGATCCATCGAAGGACGAGTGTCTG CTCGGGTCTCTCCGGCCGTGGTTGACCCGCACGTCGCCGCTCCAAAGAAG AGTTAGTACGACAGGTGGGAGCCGGGAGACCAGCATTGCGAACTGGTTGT GAAACCATCTTTTCGTTGTTGTCTCTTCAACCCCCAATTGCTTGCAGACT TCGGGTTTGTCTCCTACCTCACCTGATCCCCGCACGCCACCCTCGTAGCT TCCCTCACAGGATATGTTAGCAACGCACAGTCTAGCGGAACCTAGTCATG GCACTTGCCGCTTCTGCTCTGGGTGTCGCTGCTAGGAGTGATCACACAAC GCTAGTGCTACAAGAATAATAAATGTTGTACACAATTTGCCACTTGCACG TGTTTACCAGCCGTTTTGACTTTGCCTTTATTTGTTCCATAAAGCGTGAC AAAAATTCGAAAACAAAAGCACGCAAGTGATCAAGGCTCAAACGACGCCA GCAAGCAGCAGATCAGACCCCCTCCCTCCCACTCGCTATGTGGTCAACAA TGGTCTAACAGCGAAAGCATGCATGAAGCGAGCAAGCCCCCCTCCCGCTC GTTTTTTTTTATGTGTCCACGCGCGGGTGGTTGCTGCACCTGCCGTCGCA GGTCGGTGACGTACCTGATGCGGTGCCTGTGCGTGACCCTCACCTCCCTT CCGGGCCCGGCTCCTCACTGCGAGGCTCTGTCGGCGTACGACCCACCTCG GGGTTGGCACGACGTAGCCACCAGGCTCGGCCCACTCATGGGCGACTTTC GGACGTGCGGCGACCTGCTTTTCTCCGGGCACACGGCGTGGACGACGGTG TCGATGTTGCTCGTGAGTCGTCGTCTCGTCTTTCCTCGTAACCGTGTTTT TGGAAGATGCATGTGTGCGTATGAACACACTGTAGTACCTGAAAGACTAG CCTACCCGTTCGAGAGAAAACGCCACAACAGTCGAAGGGTGTGTGCGGGA AGTGTGAGTGTTTGCAGTGAGTGGGGAACAAGTGCCTGCTACACATAGGC GTGTTTTGTTCACGTACATTTTTCCTTTGCGCTGTGCTCGGCCTGTGCCA CTCTGTTTTTATTTGTTGTTTGTTTTTGACGTCGTGCACAAGAGAGCAGC ACTAGTTCCGTTCTGTCGTGACCCTCCCCGTCTGCCGTGTGCGGCGTGCC TTGACGAGCTGCGAGGTTTCTGCTTTGTGCCGTTTCGAAAAACCCCGCGA GGCTTGCACCGCCCACGCTTTGTGCTTTCTCCCGACCAGTACATCACGCC TTCATGCACTCTCCCTCCGGCCGTCCGTGCCCCCGGCGACCTTTATGTAG CTGACGAAGAGCTTCCGGCAAGCCCCGAGGCTGGTATACGCGTTCGTTAA GGCTGCGGGTTTCCTTTACCTCCTCACCATGGCTACGTGCACCATCGCCG GCCGCAAGCACTACACCGTGGACGTGGCCCTTGCCGTCGTCATCGCGGGT CTGACTTTCTTCAGGTTCCAGGTGGGTGCTGTGTGGGTGTCTGTCGTGTG GGGCGTGAGGAGGATGCCTGTCGCGATCGGCAGGGGAAGGAAAAGCTGAC CAGGGAAGGAGTATGAGATATGGACCTGCAACGGAAAAACCTGGTGCGTC TCGAGTGACGCTCTCGGAAGCTTGGAAATGTTTTTGTCATCGGGTGTCGT GCGATTTGTGTGCTGGATGGAGGACGTGAAGTCTCGACAAAAAAAAGTTG GTGCACGCGGTTGATGGGAGGAAGGCTGTCCAGAAGCGAATTGTTTGATG AGCCTGGTCCCTCGCCCCTACAGAGCTATGCATCTATCTAAATTTGGTAC TCAACCAAGCCGAATGAAGGATTGCAACGCCGCTCGAGGGACGTTCTGTA TGTAGTGAGCAGGGGTTCTTGGATGTTTTATGACAGCCACCGGCGCGTTT TTAGTTACTGTGAAGGGGTATATTGTGACCGAGGTGTGTACGGTATCAGG CGAGTGCTGCCAAACCGTACACATTTTCCTGTGCGCACGCATAAAAAGTT TGGCAACCAAGCATCTCCTTCCGCTCGTACATTCATCGCGCCCCTACCGG GTAAAGCAGTACTCCGTTCACAACTCTTGTTTCCGGATGACGAAACGACC GACGAATCTAAACGCCTTCCACCCGTGCTGCTGCTGCTGTCCCCGTCTGT TAGGACGGTATGTTGCCTCGACGGCATCCGCCCCGGCCAGCCAGCGGAGC ACCATCTCCCAACGGCATCGGTGCCAACGGCAGCATCAACGGGGGTACGG GCTACGGCCATCAACGCCATCGCCCCCACTCGAATGCCTACGTCTACCAC AACCTCCACCAGCAGCCGCACGGCAACGGCACCGGCATCAACGGCGGTAG CGGTAGCGTACGGCCGCATCGCCAGCACAAGCGGAAGCTCACGGCGGAGG CGGCCGAGGACCTCATGCCGTCGGGCCCCTCTTCCTCCAACCGAGGAGGA GGTGTTTCCGGCTCCGGTGCCGGTGCTGCCAAGCGTGGCGGCGGAGGGGT CGGCGACGCCACGCCGCCCACCCTTTCCGCCTCCGCCCTGGCCGCTGCAG CCGGCGAGGACATGCGGCCGTCCGCGTCGTCTTCAAGCGTGACCGGCCTG CTCACGACGGCAACGAACCGGGGGGTCGGTGGCGGCGGTGGAGGCGGTGA CGGTGATCGGGGCGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9972:1..5119-

>mRNA_Ecto-sp13_S_contig9972.21621.1 ID=mRNA_Ecto-sp13_S_contig9972.21621.1|Name=mRNA_Ecto-sp13_S_contig9972.21621.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1302bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9972:1..5119- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTACGTGTGTCCCCACGTCGGGAACGCGGACCCTGGCCGACGGGTGGG
GAAGACGGCGCTGCCGCTGTGGCTGCTGTGGGTTCTGGGCTTCCAGCACA
TACGAAGGCATATTTTGGCCATGCTGCAACCGCCCCTAGCGAGGGTCATG
CTCAACGGCGAGATCTTTATCAGCGTGAGCGTGCTGATGACGATATGCGC
GAACTTCAGCACCATGGTGCACCACCCCAGACCCCCTCTGTTCGACGTCG
GGTTCTATCTCATCCCGGCACAGGGGGTAGATAGCCCGTGGAGGCCCCTG
AGCGACATCCTCACGCTCGCTCTACCGGGGCTCGCGTTCTTCAGAACACT
GTTCTTCGACCGCCGGACGAGATGTCGCTTTATCGCTGATTGGTTCAGAC
TCATGTCGGTGACGTACCTGATGCGGTGCCTGTGCGTGACCCTCACCTCC
CTTCCGGGCCCGGCTCCTCACTGCGAGGCTCTGTCGGCGTACGACCCACC
TCGGGGTTGGCACGACGTAGCCACCAGGCTCGGCCCACTCATGGGCGACT
TTCGGACGTGCGGCGACCTGCTTTTCTCCGGGCACACGGCGTGGACGACG
GTGTCGATGTTGCTCCTGACGAAGAGCTTCCGGCAAGCCCCGAGGCTGGT
ATACGCGTTCGTTAAGGCTGCGGGTTTCCTTTACCTCCTCACCATGGCTA
CGTGCACCATCGCCGGCCGCAAGCACTACACCGTGGACGTGGCCCTTGCC
GTCGTCATCGCGGGTCTGACTTTCTTCAGGTTCCAGGACGGTATGTTGCC
TCGACGGCATCCGCCCCGGCCAGCCAGCGGAGCACCATCTCCCAACGGCA
TCGGTGCCAACGGCAGCATCAACGGGGGTACGGGCTACGGCCATCAACGC
CATCGCCCCCACTCGAATGCCTACGTCTACCACAACCTCCACCAGCAGCC
GCACGGCAACGGCACCGGCATCAACGGCGGTAGCGGTAGCGTACGGCCGC
ATCGCCAGCACAAGCGGAAGCTCACGGCGGAGGCGGCCGAGGACCTCATG
CCGTCGGGCCCCTCTTCCTCCAACCGAGGAGGAGGTGTTTCCGGCTCCGG
TGCCGGTGCTGCCAAGCGTGGCGGCGGAGGGGTCGGCGACGCCACGCCGC
CCACCCTTTCCGCCTCCGCCCTGGCCGCTGCAGCCGGCGAGGACATGCGG
CCGTCCGCGTCGTCTTCAAGCGTGACCGGCCTGCTCACGACGGCAACGAA
CCGGGGGGTCGGTGGCGGCGGTGGAGGCGGTGACGGTGATCGGGGCGGCG
GG
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