mRNA_Ecto-sp13_S_contig12615.2162.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12615.2162.1
Unique NamemRNA_Ecto-sp13_S_contig12615.2162.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: D7FJM9_ECTSI (Utp12 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJM9_ECTSI)

HSP 1 Score: 603 bits (1554), Expect = 4.540e-211
Identity = 335/361 (92.80%), Postives = 344/361 (95.29%), Query Frame = 1
Query:    1 LAKQYTCIAWHRPSSKKSKRGSSGASK-SSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSLHTASPTGGGGEASNDQVTVVAGFDTGGVSVMRTRRQSDGKGGAVSKLDIRGAAGGPSSSPSALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGSLLSSSSVAAAGGHADGDEGEEEGTGDKGGPAHVVGPGELGIRGVEKDSVVAGGGRGDKME 1080
            LAKQYTCIAWHR SSKKSKRGSSGASK SSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPS+TS  FSADGSSLF+ASSGKEVVEWNVETGTVARKLKG KHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARF NVFDVAASEVPPSEPVCTLGFAATPAFLSLH AS +GGGG+ S DQVTVVAGFDTGGVSVMRTRRQ+DGKGGAVSKLDIRGAAGGPSSSP+ALHGRLSSERPSSAILLATGSAASPGF EASFEDEAGSLLSSSSVA AGGHADG+E +EEGTGDKGGPAHVVGPGELGIRGVEKDSV   G RGD+ME
Sbjct:   52 LAKQYTCIAWHRRSSKKSKRGSSGASKPSSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPSVTSGGFSADGSSLFSASSGKEVVEWNVETGTVARKLKGFKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFANVFDVAASEVPPSEPVCTLGFAATPAFLSLHAASSSGGGGDVSTDQVTVVAGFDTGGVSVMRTRRQTDGKGGAVSKLDIRGAAGGPSSSPAALHGRLSSERPSSAILLATGSAASPGFVEASFEDEAGSLLSSSSVATAGGHADGEE-DEEGTGDKGGPAHVVGPGELGIRGVEKDSVAGEGARGDEME 411          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A6H5KNN6_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNN6_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 7.540e-47
Identity = 109/140 (77.86%), Postives = 111/140 (79.29%), Query Frame = 1
Query:  694 MRTRRQSDGKGGAVSKLDIRGAAGGPSSSPSALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGSLLSSSSVAAAGGHADGDEGEEEGTGDKGGPAHVVGPGELGIRGVEKDSVVAGGGRGDKMEDAGGGEDGDGR 1113
            MRTRRQ+DGKGGAVSKLDIRGAAGGPSS P+ALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGSLL                    GTGDKGG AHVVGPGELGIRGVEKDSV  GG R DKMEDAGG ED D R
Sbjct:    1 MRTRRQTDGKGGAVSKLDIRGAAGGPSS-PAALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGSLLXXXXXXXXXXXXXXXXXXXXGTGDKGGGAHVVGPGELGIRGVEKDSVGGGGARDDKMEDAGGREDSDSR 139          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A4D9D9A1_9STRA (Utp12 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9A1_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.830e-37
Identity = 99/236 (41.95%), Postives = 149/236 (63.14%), Query Frame = 1
Query:    1 LAKQYTCIAWHRPSSKKSKRGSSGA-SKSSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPSITSVAFSADGSSLFTASSGKE-VVEWNVETGTVARKLKGIKHGATKICLHPAGK-ILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSLHTASPTGGGGEASNDQVTVVAGFDTGGVSVMR 699
             A QYTC+AW +  +   K  +  A + S+++G++ALGTD+G VSVWDL RG LA  LGEG+     T +AFSADGS L+T+++G E V+EW++ TG   R+L G KHGA+ + + PAG  ILA+A + I L+DL +G+  +K+S+GHA +V  ++FS DG +LA+++  +R +N+F          E V T      P +L+L  A P+G   E     +T++A  DTG V ++R
Sbjct:   40 FAFQYTCLAWMQGLAWNDKNLTKVAHNPSNAMGLLALGTDRGCVSVWDLTRGVLARRLGEGQSLKRFTGMAFSADGSRLYTSNAGDEDVLEWSLGTGECRRRLIGDKHGASALVVGPAGSAILAVARTRIHLIDLVSGERRKKISSGHAAAVTHMAFSEDGHFLATASVGSRHINIFSCQGKN---KEAVITTALDGCPTWLALR-ADPSGR--EKGAVVLTLLACCDTGSVRLLR 269          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A1V9YMP7_9STRA (Utp12 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMP7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 5.030e-35
Identity = 111/310 (35.81%), Postives = 174/310 (56.13%), Query Frame = 1
Query:    1 LAKQYTCIAWHRPS---SKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGALAYSLGE-----GEGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSLHTASPTGGGGEASNDQVTVVAGFDTGGVSVMRTRRQSDGKGGAVSKLDIRGAAGGPSSSPSALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGSLL 906
            L+ +YTC+AW + S   +KK KR + G      LG++ALGT  G + VWDL++G +A  L       G G  ++T VAF+++G+SL+++++ K V+EWNV TG++ RK+K    GATKI L     +LA+ +S+I+L D+++GK +++L+ GHA +V  L FSA GRY+ SS SS RFVNVFD +A      +P+      +TP    +H         +A N   TVVA  + G V V +    +  K  A +   ++ A          +   L+++   S +++A GS   P F   + +DE G+ L
Sbjct:   47 LSYKYTCLAWSKTSPWTTKKGKRSAGGE-----LGVLALGTTTGVIVVWDLEKGEVAQRLARENNDHGHG-SAVTDVAFTSNGASLYSSAAEKYVLEWNVSTGSMVRKIKVGSEGATKIALSANDDVLAVGASSIKLFDVSSGKKSKRLTFGHASAVTQLFFSACGRYVFSS-SSERFVNVFDASADS---EDPLFNFACDSTP----IHVHGRVAVAKKAKNSTATVVASTEAGAVFVWQHAMTATSKPVAAAAKVVQSAI---------IVAALTADAAPS-VVVARGSVVKPHFETVAVQDEDGAFL 332          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A485LGV1_9STRA (Aste57867_21150 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LGV1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 8.560e-31
Identity = 80/184 (43.48%), Postives = 120/184 (65.22%), Query Frame = 1
Query:   10 QYTCIAWHRPSSKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGALAYSLG----EGEGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPP 549
            +YT +AW + S   S +  +  + S  LGM+ALGT  G++ VW+L++G +A  L     E     ++T + F++ G++LF+AS+ K V+EWNV+ G+VARK K    GA+K+ L  +  +LA+ SS I+L D+ +GK ++KL++GH+ S+  L FSA GRYL S A+  RFVNVFDVAA    P
Sbjct:   51 KYTSLAWTKTSVWSSGKKGNKRAASGELGMLALGTTTGAIVVWNLEKGEVAQRLSRDNSENGHAAAVTDIVFASSGATLFSASTEKNVLEWNVKDGSVARKFKVGAEGASKLALSASDDVLAVGSSHIKLFDVASGKKSKKLTSGHSTSIATLFFSACGRYLFS-ATHERFVNVFDVAADADAP 233          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A8K1C4L7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4L7_PYTOL)

HSP 1 Score: 130 bits (328), Expect = 8.740e-30
Identity = 88/207 (42.51%), Postives = 127/207 (61.35%), Query Frame = 1
Query:   10 QYTCIAW--HRPSSKK-SKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGALAYSLG-EGEGFP-SITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSLHTAS 615
            +YTCI W  H P +K  SKR     +K+SS G+IALGT  G + +WDL++G +   L  + EG   +I  VAF++ G+ L++ SS K V+EWNV+ G+VARK +    GA K+ + P  +ILA+  +AIR  DL++GK ARKL AG + +V  L FS   RYL S+    RFVN++D++ +E    EPV      ++ A L + T S
Sbjct:   43 KYTCITWTQHSPLTKAGSKR-----AKTSSQGLIALGTSTGVIVIWDLRKGEVVQRLSSDKEGHNGAINDVAFNSQGNLLYSCSSDKNVLEWNVKDGSVARKFRCGSEGAQKVAVSPEDEILAVGGTAIRTFDLSSGKKARKLVAGLSSAVNQLRFSQCKRYLFSATIGGRFVNMYDLSNAE--NDEPVVNFSMPSSSASLFVRTKS 242          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A5D6XKP2_9STRA (Utp12 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XKP2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 1.440e-29
Identity = 107/305 (35.08%), Postives = 159/305 (52.13%), Query Frame = 1
Query:    1 LAKQYTCIAW--HRPSSKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGALAYSLGEGEGFPS----ITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSLHTASPTGGGGEASNDQVTVVAGFDTGGVSVMRTRRQSDGKGGAVSKLDIRG--AAGGPSSSPSALHGRLSSERPSSAILLATGSAASPGFAEASFEDE 891
            L+ +YTCI W    P  KKS + +  +  ++ LG++ALGT  G+V VWDL++G +  +L   +   +    +T VAF++ GS L+++SS K V+EWNV+ G V RK +    GA K+ +    ++LA+  SAIR  DL +GK ARKL AG + SV  L FSA  R+L SS    RFVN++D+AA+E    EP       + P  L     +     G   +  V + A   +G + V   + +S  K       D +   A  G S+S   L  + S+E  +  +L+  GS   P F   S  DE
Sbjct:  384 LSYKYTCITWTLSSPLLKKSAKRAKASGSAAPLGLVALGTSAGAVVVWDLQKGEVVQTLASDKDKDAHGAAVTDVAFNSQGSLLYSSSSEKHVLEWNVKDGAVTRKFR--TDGAHKLAVSANDEVLAVGGSAIRTFDLASGKKARKLVAGLSSSVSQLLFSACARFLFSSTVGGRFVNMYDLAATE--SDEPAVNFSMPSAPVALVARADA-----GRKKSTDVLLAAVATSGSLFVWTQKYKSGAKSTKPVAPDSKSVVADSGASASAGVLAVQASAETKTE-LLVVRGSLLKPVFERVSIVDE 678          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A7S2MLY1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MLY1_9STRA)

HSP 1 Score: 127 bits (320), Expect = 4.540e-29
Identity = 71/171 (41.52%), Postives = 109/171 (63.74%), Query Frame = 1
Query:   97 MIALGTDKGSVSVWDLKRGALAYSLGEGE-GFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASS-ARFVNVFDVAASEVPPSEPVCTLGFAATPAFLSL 603
            M+A+GTD G +SVWDL+RG +   LGE +    ++  + FS+DG SL++ SS K++ +W+VE+G + R+ KG KHG   +       +LA+ SS +RL+DL TGK  RK S GHA +VR ++FS  G+YLA++     RFVN+FD   +E      + ++  +A P+ L+L
Sbjct:    1 MVAVGTDSGHISVWDLERGVVVVKLGENQKNMAAVKDLDFSSDGKSLYSCSSEKDIFDWDVESGKIVRRFKGDKHGTAVVVASRDRAVLAVGSSTVRLVDLETGKRIRKFSTGHAATVRCMAFS--GKYLATACEGDVRFVNIFD---TEAAGEAAIQSISVSAPPSSLAL 166          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A3R7AE66_9STRA (Utp12 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7AE66_9STRA)

HSP 1 Score: 121 bits (303), Expect = 5.020e-27
Identity = 77/191 (40.31%), Postives = 119/191 (62.30%), Query Frame = 1
Query:    1 LAKQYTCIAWHRPS----SKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGA----LAYSLGEGEGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSADGRYLASSASSARFVNVFDVAASEVPP 549
            L  +YT +AW + S    +  SK+G+   S +S LG++ALGT  G++ VW+L++G     LA    E     ++T + F++ G++LF++SS K V+EWNV+  TV RK K    G +K+ L  +  +LA+ +S I+L D+ +GK + KL++GHA +V  ++FS   RYL SS    RFVNVFDV++  V P
Sbjct:   19 LKYKYTTLAWTKASPWATTSASKKGNK-RSATSDLGVLALGTTTGAIVVWNLEKGEVGARLARETSENGHAAAVTDLVFTSTGATLFSSSSEKNVLEWNVKDATVTRKFKVGSEGVSKLALSKSDDVLAVGNSNIKLFDVASGKKSSKLTSGHATAVAHMAFSDCSRYLFSSTGE-RFVNVFDVSSDSVDP 207          
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Match: A0A225WVJ3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WVJ3_9STRA)

HSP 1 Score: 120 bits (301), Expect = 3.520e-26
Identity = 78/188 (41.49%), Postives = 119/188 (63.30%), Query Frame = 1
Query:    1 LAKQYTCIAWHRPSSKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKRGALAYSLGEG--EGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARKLKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVRLLSFSA--DG----RYLASSASSARFVNVFDVAASE 540
            L+ +YTC+AW + S  KSK+     S SS LG++ALGT  GSV VWDL  G + ++L      G  ++ ++AF+  GS L+++SS K V+EWNV +G VARK +    GA+ + +   G+IL    SA+R  DL++GK +RKL +G + +V  L F+A  DG    R+L ++ + ARFVN++D+  +E
Sbjct:   40 LSYRYTCLAWTQASKTKSKK----RSGSSDLGLLALGTSNGSVVVWDLTTGDVKHTLHAEVVHGSGAVQALAFNPQGSLLYSSSSDKYVLEWNVNSGQVARKFRCGSGGASALAVSADGEILVAGGSALRTFDLSSGKKSRKLVSGLSSAVTQLRFAAVEDGLESSRFLFAATAGARFVNMYDLQLTE 223          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12615.2162.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJM9_ECTSI4.540e-21192.80Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KNN6_9PHAE7.540e-4777.86Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9D9A1_9STRA1.830e-3741.95Utp12 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A1V9YMP7_9STRA5.030e-3535.81Utp12 domain-containing protein n=1 Tax=Achlya hyp... [more]
A0A485LGV1_9STRA8.560e-3143.48Aste57867_21150 protein n=1 Tax=Aphanomyces stella... [more]
A0A8K1C4L7_PYTOL8.740e-3042.51Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XKP2_9STRA1.440e-2935.08Utp12 domain-containing protein n=1 Tax=Pythium br... [more]
A0A7S2MLY1_9STRA4.540e-2941.52Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A3R7AE66_9STRA5.020e-2740.31Utp12 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A225WVJ3_9STRA3.520e-2641.49Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12615contigEcto-sp13_S_contig12615:625..4991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score610.1
Seed ortholog evalue6.7e-172
Seed eggNOG ortholog2880.D7FJM9
Preferred nameWDR43
Model size1113
KEGG rclassRC00097,RC00609
KEGG koko:K01966,ko:K14546
KEGG ReactionR01859
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,ko03008,map00280,map00630,map00640,map01100,map01120,map01130,map01200,map03008
KEGG ModuleM00373,M00741
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0000785,GO:0000792,GO:0001650,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006356,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016070,GO:0016072,GO:0019219,GO:0019222,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0033553,GO:0033554,GO:0034455,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0042594,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045943,GO:0046483,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0071496,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2000232,GO:2000234,GO:2001141
Exons7
EggNOG free text desc.positive regulation of rRNA processing
EggNOG OGsKOG4547@1,KOG4547@2759
EC2.1.3.15,6.4.1.3
Cds size1113
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12615.2162.1prot_Ecto-sp13_S_contig12615.2162.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12615 625..4991 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.2213216-CDS-Ecto-sp13_S_contig12615:624..10131681462673.2213216-CDS-Ecto-sp13_S_contig12615:624..1013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 625..1013 -
1681462673.2593026-CDS-Ecto-sp13_S_contig12615:1641..18591681462673.2593026-CDS-Ecto-sp13_S_contig12615:1641..1859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 1642..1859 -
1681462673.2701259-CDS-Ecto-sp13_S_contig12615:2403..25381681462673.2701259-CDS-Ecto-sp13_S_contig12615:2403..2538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 2404..2538 -
1681462673.2786982-CDS-Ecto-sp13_S_contig12615:2958..30241681462673.2786982-CDS-Ecto-sp13_S_contig12615:2958..3024Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 2959..3024 -
1681462673.2871654-CDS-Ecto-sp13_S_contig12615:3478..36061681462673.2871654-CDS-Ecto-sp13_S_contig12615:3478..3606Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 3479..3606 -
1681462673.295549-CDS-Ecto-sp13_S_contig12615:4303..44321681462673.295549-CDS-Ecto-sp13_S_contig12615:4303..4432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 4304..4432 -
1681462673.304015-CDS-Ecto-sp13_S_contig12615:4943..49911681462673.304015-CDS-Ecto-sp13_S_contig12615:4943..4991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12615 4944..4991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12615.2162.1

>prot_Ecto-sp13_S_contig12615.2162.1 ID=prot_Ecto-sp13_S_contig12615.2162.1|Name=mRNA_Ecto-sp13_S_contig12615.2162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=371bp
LAKQYTCIAWHRPSSKKSKRGSSGASKSSSLGMIALGTDKGSVSVWDLKR
GALAYSLGEGEGFPSITSVAFSADGSSLFTASSGKEVVEWNVETGTVARK
LKGIKHGATKICLHPAGKILAIASSAIRLLDLTTGKTARKLSAGHAGSVR
LLSFSADGRYLASSASSARFVNVFDVAASEVPPSEPVCTLGFAATPAFLS
LHTASPTGGGGEASNDQVTVVAGFDTGGVSVMRTRRQSDGKGGAVSKLDI
RGAAGGPSSSPSALHGRLSSERPSSAILLATGSAASPGFAEASFEDEAGS
LLSSSSVAAAGGHADGDEGEEEGTGDKGGPAHVVGPGELGIRGVEKDSVV
AGGGRGDKMEDAGGGEDGDGR
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mRNA from alignment at Ecto-sp13_S_contig12615:625..4991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12615.2162.1 ID=mRNA_Ecto-sp13_S_contig12615.2162.1|Name=mRNA_Ecto-sp13_S_contig12615.2162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4367bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12615:625..4991- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCCAAGCAGTACACCTGCATCGCATGGCACCGACCATCTTCGAAGGT GAACAGAAATGCTGCAACGATCGAAGCGAGTCCATGCCGGAATTTTTTGT TCCGTGAATACTGGCGGCGCCCATGTCTACTTGTACCAGAAACATGTCAC TCCCAACCCAACCAACACCCAACCGAAGTGTGCCTGTCCATGTAGGCACG TACATGTACTGGTATGCTGCGAGCCAACCGACAACCGTAAATGGCCGGCG GGCTGCTGGTGCACATTCGGCAACAGGACGCGATGTACCACTTATGTAGT GTCAGCACAAAAGTGTCGGCGCGGTGCCTACCGTAGGCTGCCGTCATGGC GGCTACGGTGTACCATCGAACAGCGGCAAAGGGCGACATGTATATGCGCC TCGAGATGGGCTCTATGCACATGGTGCCGCACAACAGGACGCTAGCTCCA CCCGCCAACGCCTTGTAAGCCCTGCAGTAGCATCGAGTCCCACACGATCC TGCTTAGTTTGCGACACCCAATCGTACCCGTGCTATTTCCTCTCCCCCTC TACGCACAGAAGTCTAAGCGGGGGAGCTCCGGGGCGTCGAAGTCTTCTTC TCTGGGGATGATCGCGCTCGGAACGGACAAGGGGAGCGTGTCCGTGTGGG ACCTAAAGCGTGGCGCTCTCGCATATTCCCTGGGAGAGGTGAGTGCTTCT TGATGCGATGGTGTTGGTCGTGACTGTTATCTGTTTGCGTTTGGTTAGCT TTGTAATCGTTGGCAGCACTGCCGTAAAGTACACGACACGAGATAAGCCT CCCACCAACAACACCACACCAGGTGTTTAACACTTTTGGGTTCGACATGA ACCCAAACTTCCAAACCATTATAAGTTCACCGAATAGGGCGCCATCAGAT ACACCCCCCCACGATATCACACCTGGTGATGTTTGAGAAGCCGAAGTGTT TTGCCGAGCTGTCTTTCAATGTTTCGTACCATCGTACACTGCTTTACGCA CTCCCAAGACTCTTGTCTCGGCATATCATAGAGAACCACAACTTGTGCCC GAAACACTTCGCTGCCTGAAGTCAGGAAGGATTCTACTTTCCGCCTCCAG AGAAGAACGCACTTCTCCATGTCAGAGCAACAGCAGCATACAAAAGCAAT AGCGAAGGCGTATTTTTCGGCCAAAAACTTAAAATCGTTCGAAAGTTCGA CATCAGTACCCACGGCGCAATCGCCGCCCCATGTTTTGCCTCGCTAGGCG CGTGTGGCGCTCTCGGGACAACCAGCAGCAACCTCCCCTTCTGCTCCTTC CTAATGCCACCTTGCCAAACACCGGCGCCAACACCTTTTGTATCCCCCAT TGCTGTCTGCGTCCCCCCCCCCCCCGACTGTCAAGGGAGAGGGTTTCCCT TCGATAACGTCGGTGGCGTTTTCCGCGGACGGCAGCAGCCTGTTCACAGC CTCCAGCGGAAAGGAGGTGGTGGAGTGGAACGTGGAGACGGGGACCGTGG CGCGAAAGCTCAAGTGAGAAAAAGAAGGTTGTTCTTTTCGAAGGCAGCAA GATGTGGAAATGTCATCCCTACCGTGATGCCGGACACAGCGGTTATGGGA ACTGATTTGGGTACAGAAAGATAAGAAATGTTGGGAATGTTCTGCAGGTG TAGATGCTTTGTGGCGGCAAAACACTAGGGGCTGTGGTGGGTTTTGAGGA ACCGGGAACATGGAAGGAAATTGTCAGCGCGGAGATCACGTGAAGAACGG TGCGCCCTGAAACACCACGTCCCGTCTGCACGGTCAGCGTTACGTACCAA GCTTGTGTGTTGAGCACGTTGGTGGTGTTGATTGCAACAAAAGCTGGCGT CTTGTACAGTTTTAAAGACGAATCTTCTCTAGCGCTGTACGTATCCCCGA CTACGCCCTCCCCATCTGACCCCCCCCCCCCAACGCTCACGCCCCCTTAC TTTATTGTCAACTCCAGGGGTATCAAGCATGGCGCGACGAAAATCTGCCT TCATCCCGCCGGCAAGATCCTCGCCATTGCTAGGTTAGACCAAACACAGC ACCCTGCTCTTGTGCTGTGGTTGCTGATAGTCCTCCGTCATCATTGGGCG ATTCCAGTGATGATGATAATGATCGTGGCGCAGTCGGTTGGTGCAGTGCG TTTCCTGTTGTTTGGCGTGGGTTACTTGAACGAAGCTCATCAAGGGATGT GATATCGCGTATTGAGTCACCGTTTTTTTCTCACCGGCTTGGCTTGGTAT CCTCGGTTGTCGACAAAGGTCTCGGGAAGTTCCCAGCAAGCTCGTCCAGC AATATCAACACACACATACCCCCTGCCCCCCCGCGCCAATGCTTCCGTCC TCTCGAGGACGCGTGGTCAATGGTCTACAACTGAGGCATGCACACTACGA GTACGCCCCCCCCCCGCCCCGCGCGCCCATTTTCTCGCTACACGAAACCC CAGCTCGGCCATTCGGCTGCTAGACCTGACCACGGGCAAGACCGCCCGCA AGCTCTCGGCGGGCCACGCCGGTTCGGTCCGCCTGCTGTCCTTCTCAGCC GATGGCCGCTACCTCGCCTCTTCGGCATCCTCAGCAAGGTAAAGAGCCAA CGAACACAGCAGATAAAGGACATGTCTGTTTTGGTGATGGGTATTGGGGT GTTTTTTGGAGGGGGGGGGGGGCTGGAGTGGTGTCCGAACCTGCTGGCTT GGCGCAGAGGTAGTTCGTTTTTGTTTGCACCGCAGCGGCGGTACCTCGAG CCTTAACGTTGTCGTAGTTTTGCTTGGCACACCAGACGCGCTTGGGTGGT GTTGGAGTGCAGCATTAGTGCTTGTGAGCCGGCCGTGTCGAATTTGCTCC TGTTCACTACCTATGGTTGTTGCTGTTGTTGTTTCGAGAGAGCAAAACCG TTCCGGTCTCTGCTCAGTACTCGCTAACATCGGCGTCGGATCCAACTGAC GCGGACACCTCCCGTGGTCACAGGACAAATACCCGAAAGAGAGCATTGAA CACACGACTGATAAACTTAAAGACCCTCAGGAAAGATGAAGAATCATCAC AAACGTGATCAATATAACACAAGAAACAGAACAAAAAATGCTGTATGACA GTAGCTGCTGTGTGTGCCTTTTTCCTTACCAGGTTCGTCAATGTTTTCGA CGTGGCGGCGAGCGAGGTCCCCCCCTCGGAGCCTGTGTGCACGCTGGGTT TCGCCGCTACACCGGCGTTTTTGTCCCTCCACACCGCTTCTCCCACCGGA GGAGGGGGAGAGGCCTCGAACGACCAGGTTACCGTGGTGGCGGGTTTCGA CACCGGAGGCGTGTCGGTGATGAGGACCCGCCGCCAGAGCGATGGGAAAG GTGTGTGTTTCTCCGAAAGTGCGTACAGACCCTTCATGTTTCTAGCGCAG ATGTCTATTGTTCGGTTCCGCGTTGTGGCGAAGATTTGATGTTGGAGTCT CGCCGTTGTTAGGCGGCTGCCGATCGCTGCGTGAAGCGGGAAAATGTCCC CGTGTCTTGATTGTTTTTTCTTCTTCAATGTTTCCTGTCGTGCTGCAGAA TCTCCGAGCCGGGGGACCCCGCACAAGGAAAGTTCTCCTCCGAAGAGCAA CCAGTGCTGATCAGAACCTGAGTGAAGTTGGGAATGCGACAGTTTTGTTG AGATGGTCCGCTGTCAGTGGAACTCCTACATAAATTCCCCTCAACCCCGA TGCCCCGCTCGGACCCCGACCGCTTGTGGCGTTGCGACAAGATGGAGATG ATGGATGATGGATGACTCCTTCTGAAATGAAACCGTCGTCATCTTCTTCC ACGTATTTCTTTGGGCGACTGCTAGACCGTGGGCGACATACCACATGTTC TTGAAGTGCGCAGCCTTTTCACGCCCTCTTCTACCCTCTCCCCTTCACCC GTCCGCATCTTCTCTATCCTGGAAACAAACCAACGGCATTACCATGCGAT GGCCTTGTTTTCAATTTCAACATTACAGGGGGTGCGGTGTCCAAGCTGGA CATCCGCGGGGCCGCCGGGGGCCCCTCCTCCTCCCCCTCCGCCCTGCACG GCCGCCTGAGCAGCGAGCGCCCCTCCTCTGCGATCCTATTGGCCACGGGT TCCGCCGCATCTCCTGGCTTCGCGGAGGCGTCTTTCGAAGACGAAGCCGG TTCGTTGCTGTCATCCTCGTCCGTCGCCGCCGCCGGGGGGCACGCAGACG GGGACGAGGGGGAGGAGGAGGGGACGGGAGACAAGGGGGGCCCCGCGCAC GTTGTTGGTCCCGGAGAGCTCGGCATCCGAGGGGTTGAGAAGGACTCCGT GGTAGCGGGGGGGGGGCGTGGTGATAAGATGGAGGACGCGGGGGGGGGGG AGGATGGTGACGGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12615:625..4991-

>mRNA_Ecto-sp13_S_contig12615.2162.1 ID=mRNA_Ecto-sp13_S_contig12615.2162.1|Name=mRNA_Ecto-sp13_S_contig12615.2162.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1113bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12615:625..4991- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCCAAGCAGTACACCTGCATCGCATGGCACCGACCATCTTCGAAGAA
GTCTAAGCGGGGGAGCTCCGGGGCGTCGAAGTCTTCTTCTCTGGGGATGA
TCGCGCTCGGAACGGACAAGGGGAGCGTGTCCGTGTGGGACCTAAAGCGT
GGCGCTCTCGCATATTCCCTGGGAGAGGGAGAGGGTTTCCCTTCGATAAC
GTCGGTGGCGTTTTCCGCGGACGGCAGCAGCCTGTTCACAGCCTCCAGCG
GAAAGGAGGTGGTGGAGTGGAACGTGGAGACGGGGACCGTGGCGCGAAAG
CTCAAGGGTATCAAGCATGGCGCGACGAAAATCTGCCTTCATCCCGCCGG
CAAGATCCTCGCCATTGCTAGCTCGGCCATTCGGCTGCTAGACCTGACCA
CGGGCAAGACCGCCCGCAAGCTCTCGGCGGGCCACGCCGGTTCGGTCCGC
CTGCTGTCCTTCTCAGCCGATGGCCGCTACCTCGCCTCTTCGGCATCCTC
AGCAAGGTTCGTCAATGTTTTCGACGTGGCGGCGAGCGAGGTCCCCCCCT
CGGAGCCTGTGTGCACGCTGGGTTTCGCCGCTACACCGGCGTTTTTGTCC
CTCCACACCGCTTCTCCCACCGGAGGAGGGGGAGAGGCCTCGAACGACCA
GGTTACCGTGGTGGCGGGTTTCGACACCGGAGGCGTGTCGGTGATGAGGA
CCCGCCGCCAGAGCGATGGGAAAGGGGGTGCGGTGTCCAAGCTGGACATC
CGCGGGGCCGCCGGGGGCCCCTCCTCCTCCCCCTCCGCCCTGCACGGCCG
CCTGAGCAGCGAGCGCCCCTCCTCTGCGATCCTATTGGCCACGGGTTCCG
CCGCATCTCCTGGCTTCGCGGAGGCGTCTTTCGAAGACGAAGCCGGTTCG
TTGCTGTCATCCTCGTCCGTCGCCGCCGCCGGGGGGCACGCAGACGGGGA
CGAGGGGGAGGAGGAGGGGACGGGAGACAAGGGGGGCCCCGCGCACGTTG
TTGGTCCCGGAGAGCTCGGCATCCGAGGGGTTGAGAAGGACTCCGTGGTA
GCGGGGGGGGGGCGTGGTGATAAGATGGAGGACGCGGGGGGGGGGGAGGA
TGGTGACGGCAGG
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