prot_Ecto-sp13_S_contig12612.2161.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12612.2161.1
Unique Nameprot_Ecto-sp13_S_contig12612.2161.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length92
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.940e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:   20 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 92
            FDDSRLERRLREVSRKLVSGGALGKAYEALGLLD LV RVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
Sbjct:  692 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDSLVSRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 764
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BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.990e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0 
Query:   20 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 92
             DDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLV RVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
Sbjct:  609 LDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVSRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLU6_9PHAE2.940e-3597.26PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FSV8_ECTSI2.990e-3597.26Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12612contigEcto-sp13_S_contig12612:3236..3848 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12612.2161.1mRNA_Ecto-sp13_S_contig12612.2161.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12612 3234..3848 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12612.2161.1 ID=prot_Ecto-sp13_S_contig12612.2161.1|Name=mRNA_Ecto-sp13_S_contig12612.2161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
AQQKRSLVDDDDEDEDDDDFDDSRLERRLREVSRKLVSGGALGKAYEALG
LLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
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