mRNA_Ecto-sp13_S_contig9969.21614.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9969.21614.1
Unique NamemRNA_Ecto-sp13_S_contig9969.21614.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: D8LGK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK2_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.590e-35
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 2 
Query:  149 YDPSTRPRTPVPSPAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHDALQQL 343
            YDPSTRPRTPVPS AGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLH+ALQQL
Sbjct:   78 YDPSTRPRTPVPSAAGPRRSGSGGGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQL 142
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: G4YHA5_PHYSP (Vta1 domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YHA5_PHYSP)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-11
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSVDT 165
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK+PTPG   G D++SV T
Sbjct:  124 GTFFDILNQFGDVSEDVVEKRRYCKYKAATILKAIKEGKVPTPGPPEGLDLKSVST 179
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A397D5Y7_9STRA (Vta1 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D5Y7_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 5.480e-11
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTP 168
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E VR   +P
Sbjct:  120 GSFFDILKQFGPPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQVRLSPSP 175
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A8J5JH99_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JH99_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 8.400e-11
Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSV 159
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D++SV
Sbjct:  122 GTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKSV 175
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: D8LGK1_ECTSI (Vta1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGK1_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.560e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 2 
Query:  218 GGRAMEGNMADAMEHCKFALRALEKKDVDLAVQKLHDALQQL 343
            G RAMEG +ADAMEHC+FA+RALE +D D A QKL +ALQ+L
Sbjct:   29 GSRAMEGKLADAMEHCRFAIRALEFRDADSAAQKLREALQKL 70
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A3R6W3I3_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6W3I3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.190e-10
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVR 153
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E V+
Sbjct:   78 GSFFDILKQFGTPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQVQ 128
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A024TGV6_9STRA (Vta1 domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TGV6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.670e-10
Identity = 30/63 (47.62%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTPEDARAVP 189
            G FFD+L+QFG P E++  +  Y K+KA+ ILKA+KEG+ PTPG   E +   +TP+D    P
Sbjct:  120 GSFFDILKQFGTPSEDVLEKTKYSKFKAADILKAIKEGRTPTPGAPSEQI--PNTPDDDGVAP 180
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A329T423_9STRA (Vta1 domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329T423_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.640e-10
Identity = 32/62 (51.61%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSVDTPEDARA 183
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D++S +   D  A
Sbjct:  122 GTFFDILSQFGDISEDVAEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKSAEDGSDDAA 183
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A7S4D8M6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8M6_HETAK)

HSP 1 Score: 63.9 bits (154), Expect = 6.650e-10
Identity = 30/59 (50.85%), Postives = 39/59 (66.10%), Query Frame = 1 
Query:    7 FFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDVRSVDTPEDARA 183
            F+D L QFG    E  +++ Y KWKA++ILKA+KEG+ P PGG GE+   V TP  A A
Sbjct:  121 FYDALAQFGDLAPEPLQKKKYAKWKAAEILKAVKEGRDPAPGGFGEETAKVVTPRSAEA 179
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BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Match: A0A0W8AZU1_PHYNI (Vacuolar protein sorting-associated protein VTA1 n=3 Tax=Phytophthora TaxID=4783 RepID=A0A0W8AZU1_PHYNI)

HSP 1 Score: 64.3 bits (155), Expect = 6.900e-10
Identity = 30/54 (55.56%), Postives = 40/54 (74.07%), Query Frame = 1 
Query:    1 GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGA-GEDVRSV 159
            G FFD+L QFG   E++  +R YCK+KA+ ILKA+KEGK PTPG   G D+++V
Sbjct:  124 GTFFDILNQFGDISEDVVEKRRYCKYKAATILKAIKEGKTPTPGPPEGLDMKNV 177
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9969.21614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK2_ECTSI5.590e-3596.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4YHA5_PHYSP1.650e-1157.14Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A397D5Y7_9STRA5.480e-1151.79Vta1 domain-containing protein n=2 Tax=Aphanomyces... [more]
A0A8J5JH99_9STRA8.400e-1157.41Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
D8LGK1_ECTSI1.560e-1069.05Vta1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A3R6W3I3_9STRA2.190e-1052.94Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A024TGV6_9STRA2.670e-1047.62Vta1 domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A329T423_9STRA5.640e-1051.61Vta1 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A7S4D8M6_HETAK6.650e-1050.85Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0W8AZU1_PHYNI6.900e-1055.56Vacuolar protein sorting-associated protein VTA1 n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9969contigEcto-sp13_S_contig9969:3853..5390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score67.0
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog157072.XP_008878884.1
Preferred nameVTA1
Model size348
KEGG rclassRC00069,RC03004
KEGG koko:K03260,ko:K05954,ko:K12199,ko:K20182
KEGG ReactionR09844
KEGG Pathwayko00900,ko01130,ko03013,ko04138,ko04144,ko05416,map00900,map01130,map03013,map04138,map04144,map05416
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0001671,GO:0002376,GO:0002831,GO:0002833,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005829,GO:0006810,GO:0006914,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007032,GO:0007034,GO:0007275,GO:0008022,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009605,GO:0009607,GO:0009791,GO:0009814,GO:0009845,GO:0009987,GO:0010008,GO:0010154,GO:0010256,GO:0012505,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0022411,GO:0022414,GO:0022607,GO:0030234,GO:0031090,GO:0031347,GO:0031349,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032101,GO:0032103,GO:0032501,GO:0032502,GO:0032504,GO:0032509,GO:0032511,GO:0032781,GO:0032879,GO:0032984,GO:0032991,GO:0036257,GO:0036258,GO:0036452,GO:0042802,GO:0042803,GO:0043085,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043462,GO:0043900,GO:0043902,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044248,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045324,GO:0046755,GO:0046907,GO:0046983,GO:0048316,GO:0048518,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051049,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060589,GO:0060590,GO:0061458,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070925,GO:0071840,GO:0071985,GO:0080001,GO:0080134,GO:0090351,GO:0097708,GO:0098542,GO:0098588,GO:0098772,GO:0098796,GO:0098805,GO:1900424,GO:1900426,GO:1902494,GO:1903335,GO:1904896,GO:1904903,GO:1904949,GO:1990621
Exons2
EggNOG free text desc.multivesicular body sorting pathway
EggNOG OGsKOG0917@1,KOG0917@2759
EC2.5.1.58
Cds size345
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01006,ko03012,ko03019,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464256.5469418-CDS-Ecto-sp13_S_contig9969:3852..39991681464256.5469418-CDS-Ecto-sp13_S_contig9969:3852..3999Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9969 3853..3999 +
1681464256.5623593-CDS-Ecto-sp13_S_contig9969:5191..53891681464256.5623593-CDS-Ecto-sp13_S_contig9969:5191..5389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9969 5192..5389 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9969.21614.1prot_Ecto-sp13_S_contig9969.21614.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9969 3853..5389 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9969.21614.1

>prot_Ecto-sp13_S_contig9969.21614.1 ID=prot_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
GVFFDVLRQFGAPDEEMDRRRIYCKWKASQILKALKEGKIPTPGGAGEDV
RSVDTPEDARAVPGGAAEIGQRRRQGDGGQHGGRDGALQVRSAGAGEEGC
GPCGAETARCPAAAH
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mRNA from alignment at Ecto-sp13_S_contig9969:3853..5390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9969.21614.1 ID=mRNA_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1538bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9969:3853..5390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGCGCCCCCGATGAGGAGAT
GGACCGAAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAGG
CTCTCAAGGAGGGGAAGATACCAACTCCCGGGGGGGCTGGGGAGGACGTG
AGTACTGCTGTTGTTGCTGATGTTGTTGCTGCTGTTGTGTTGCTGACGTT
TATTTGTCCCTCGCGCTGATCCCGGTTGAAGAGAGGCCGGTGGCCTATGT
GCGAGCGTGTTTTCTGGGGGGGGTGTTCCTTGGGACAGTCGTAGTGGATT
TACACAGTTGGCCTGTTTTTTGTTGTCGTTGTTGCTTTTTTTCTAAGGGG
CGGGGGCGGAACACTCAGGTGGGGGGGCTTGTTCTCTTCGGCACCTGCTA
AGAGAGAAGAAAGAACGGGAGTAAGGGAGTGCACGTGCGGGCGCGCGCGC
GAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAAAGAGACCTCTTCACGCCGAAGGGGGCACAGCTACAGCACGGCACTTC
ATGCGACCCGCGTCCACCCCCCACCAACCCTGTGCCATCGGTGTACATGT
GCATCTTCGCATCTTCGTCTTCTTCTTGTCATGCTGATCTACACAAGTCA
AGTTCTGCACGTTCGCAAGGACTATCGCGTCGTGCATTGCTGTCAGTTCA
TGACGAATGTTGCCGTGTGGTTACGTGCCGCTTGACTGTTCCCATCGCAT
CACCTCGACAAAAGCTGACCCAGCACAACGAAAATTCTGCCACATTTTTT
TCCCTCGGGGGGTCACCCACCACCACCTTACCTCCTCACCAGGTCGACAC
AGGAATGCCTTCCGGCAACGATGCAGCAGCACCGGCGCCGGCTCCGGAGG
CAACAGGAATGCCTTCTTCGAGCGGAGGCGGAGGCGGCGGCGGCGGCGGC
GGCGGGTACGGCGGTGGCACCGACGAATCGAAGCAGAACGACCCCCTAGC
CGGACTGATCCCCGAAGCCCCGAGGGACAACCCTTTCCTCAGCCCCTCGC
CCACCCACGAAGAAGGAGCAGCAGCAGCAGCAGCAGCAGCAGCGGCAGCC
GCTGACGCCACGCCACCAGCTTCATCACCGTACCACCAGCCTCAGCCGTA
CGGGGGCGGCGGCGGAGCCCCCGGCCCGGAAGCCGCCGCAGCAGCGGGGT
ACCCGGGCGTGGCCGCCCCGTCCCCGTACGCAAGACCAGGGCCGCCGGCC
CCCGCGCCCGCTCCGTACGTGGCCCCCGTGGCCCCGGCCCCCTCTCCCTA
TGCGGCGCCGGCACCGGCGCCTGCGGCGCCGCGGCCGAGGTACGATCCGT
CGACACGCCCGAGGACGCCCGTGCCGTCCCCGGCGGGGCCGCGGAGATCG
GGCAGCGGCGGCGGCAGGGCGATGGAGGGCAACATGGCGGACGCGATGGA
GCACTGCAAGTTCGCTCTGCGGGCGCTGGAGAAGAAGGATGTGGACCTTG
CGGTGCAGAAACTGCACGATGCCCTGCAGCAGCTCACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9969:3853..5390+

>mRNA_Ecto-sp13_S_contig9969.21614.1 ID=mRNA_Ecto-sp13_S_contig9969.21614.1|Name=mRNA_Ecto-sp13_S_contig9969.21614.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9969:3853..5390+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGCGCCCCCGATGAGGAGAT
GGACCGAAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAGG
CTCTCAAGGAGGGGAAGATACCAACTCCCGGGGGGGCTGGGGAGGACGTA
CGATCCGTCGACACGCCCGAGGACGCCCGTGCCGTCCCCGGCGGGGCCGC
GGAGATCGGGCAGCGGCGGCGGCAGGGCGATGGAGGGCAACATGGCGGAC
GCGATGGAGCACTGCAAGTTCGCTCTGCGGGCGCTGGAGAAGAAGGATGT
GGACCTTGCGGTGCAGAAACTGCACGATGCCCTGCAGCAGCTCAC
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