mRNA_Ecto-sp13_S_contig12612.2161.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12612.2161.1
Unique NamemRNA_Ecto-sp13_S_contig12612.2161.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.940e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   58 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 276
            FDDSRLERRLREVSRKLVSGGALGKAYEALGLLD LV RVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
Sbjct:  692 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDSLVSRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 764
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 2.990e-35
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:   58 FDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 276
             DDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLV RVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
Sbjct:  609 LDDSRLERRLREVSRKLVSGGALGKAYEALGLLDLLVSRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT 681
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12612.2161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLU6_9PHAE2.940e-3597.26PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FSV8_ECTSI2.990e-3597.26Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12612contigEcto-sp13_S_contig12612:3234..3848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score137.1
Seed ortholog evalue4.1e-30
Seed eggNOG ortholog2880.D7FSV8
Model size278
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
Cds size276
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.1782663-CDS-Ecto-sp13_S_contig12612:3235..33371681462673.1782663-CDS-Ecto-sp13_S_contig12612:3235..3337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12612 3236..3337 -
1681462673.1904478-CDS-Ecto-sp13_S_contig12612:3674..38481681462673.1904478-CDS-Ecto-sp13_S_contig12612:3674..3848Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12612 3675..3848 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12612.2161.1prot_Ecto-sp13_S_contig12612.2161.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12612 3236..3848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12612.2161.1

>prot_Ecto-sp13_S_contig12612.2161.1 ID=prot_Ecto-sp13_S_contig12612.2161.1|Name=mRNA_Ecto-sp13_S_contig12612.2161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
AQQKRSLVDDDDEDEDDDDFDDSRLERRLREVSRKLVSGGALGKAYEALG
LLDLLVCRVRLEDNVLLQLCSACKTCLVLEAPSPADRRGEGT
back to top

mRNA from alignment at Ecto-sp13_S_contig12612:3234..3848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12612.2161.1 ID=mRNA_Ecto-sp13_S_contig12612.2161.1|Name=mRNA_Ecto-sp13_S_contig12612.2161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:3234..3848- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCAACAGAAGAGGAGTCTCGTCGATGACGATGACGAGGACGAGGACGA
CGACGACTTCGACGACTCGAGGCTAGAGAGGCGGCTGCGAGAAGTTTCTA
GGAAGCTTGTCTCCGGCGGCGCGCTGGGCAAGGCGTACGAGGCGCTGGGG
CTGCTGGACTTGCTCGTGTGTCGGGTACGGTAACGTTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGCTGGTGACGGCGTTGTTGTTGTTGTTGTTGTTGGT
AATTATGGTACCGTTTTTTTGTTCGAACGGAGGGGCGGGGGCGGTTTATT
TTTGTCGTCTTGCTGGATGGCAGATTCTTATTATGCAGATAGTCCTTTGA
ATTCCGTCCACCCTGCTCTCCAGCGCCCTTCGAGTGAAGAGGTCTTTGAA
CGCAAACACCTAAACGCGTTCCAAATGCGACGTTCATTGCGTTACCGACC
TGACTTGTTCTCTTTTTCCGCTCATGGAATGCCACGCGTTCGGAACACGA
TGACGCTGCAGGTGAGACTAGAGGACAACGTACTCCTGCAGCTGTGCAGT
GCTTGCAAGACCTGCCTTGTGCTGGAGGCGCCCTCGCCGGCAGACAGGCG
GGGGGAGGGGACGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12612:3234..3848-

>mRNA_Ecto-sp13_S_contig12612.2161.1 ID=mRNA_Ecto-sp13_S_contig12612.2161.1|Name=mRNA_Ecto-sp13_S_contig12612.2161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:3234..3848- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCCAACAGAAGAGGAGTCTCGTCGATGACGATGACGAGGACGAGGACGA
CGACGACTTCGACGACTCGAGGCTAGAGAGGCGGCTGCGAGAAGTTTCTA
GGAAGCTTGTCTCCGGCGGCGCGCTGGGCAAGGCGTACGAGGCGCTGGGG
CTGCTGGACTTGCTCGTGTGTCGGGTGAGACTAGAGGACAACGTACTCCT
GCAGCTGTGCAGTGCTTGCAAGACCTGCCTTGTGCTGGAGGCGCCCTCGC
CGGCAGACAGGCGGGGGGAGGGGACG
back to top