mRNA_Ecto-sp13_S_contig9958.21606.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9958.21606.1
Unique NamemRNA_Ecto-sp13_S_contig9958.21606.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A6H5KIY4_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIY4_9PHAE)

HSP 1 Score: 379 bits (973), Expect = 1.510e-110
Identity = 604/823 (73.39%), Postives = 609/823 (74.00%), Query Frame = 1 
Query:    1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELNPDKKPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXX--APSATXXXXXXXXXXXAATAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS----------------------------------------------------------------------------------------AVAGKGQG------------------ATVDDAPAGSPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKATAVAAGRAKGPDMGKPEESDNGVIAARVGVEKAAAGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAADPGLPADDGDANASDDSASMPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----TTEDPKEDGTFCHMCRRGKSDPVAAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEKVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 2133
            QAFRAERE+AGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYEL PDKKPR      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  XXXXX     AP+A    XXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                                         AVAGKG+                   A VDDAPAGSPSS          XXXXXXXXXXXXX            XXXXXXXXXXXXX           GLK+TAVAA R KGPD GKPEE DNGVIAARVG EKAAAGK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      LPA                 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 TEDPKEDGTFCHMCRRGKSDP  AKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVE+VDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL
Sbjct: 2322 QAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELYPDKKPRARGRKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPATAAPAAAAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXPAIAPIGSSPPYPSTAAPAAPKKAVVEGYAVAGKGEXXXXXXXXXXXXXXXXXXVAAVDDAPAGSPSSIPANAPSTPAXXXXXXXXXXXXXSSAAGPSAVGAGXXXXXXXXXXXXXS----------GLKSTAVAAERGKGPDKGKPEEGDNGVIAARVGAEKAAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXE-LPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEEGEAPAETKENGGATEDPKEDGTFCHMCRRGKSDPFVAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEEVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 3133
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: D8LQQ1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQQ1_ECTSI)

HSP 1 Score: 287 bits (735), Expect = 2.800e-79
Identity = 244/711 (34.32%), Postives = 251/711 (35.30%), Query Frame = 1 
Query:    1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIYYELNPDKKPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSXXXXXXXXAPSATXXXXXXXXXXXAATAAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAVAGKGQGATVDDAPAGSPSSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLKATAVAAGRAKGPDMGKPEESDNGVIAARVGVEKAAAGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAADPGLPADDGDANASDDSASMPIAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTEDPKEDGTFCHMCRRGKSDPVAAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEKVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 2133
            QAFRAERE+AGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY                                                                                                                                                                                                                                                                                                               + +E +                                                                                                                                                        XXXXXXXXXXXXXXXXXXX TE+PKEDGTFCHMCRRGKSDP  AKEGRIIGPFRGV+VRGQPRQLWVHRKCAEYSPEVE+VDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL
Sbjct: 1573 QAFRAERESAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RKDEVEXXXX----------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXTEEPKEDGTFCHMCRRGKSDPFVAKEGRIIGPFRGVIVRGQPRQLWVHRKCAEYSPEVEEVDGELENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFEKADRGKEFYCL 1832
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S3UUG2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUG2_HETAK)

HSP 1 Score: 114 bits (284), Expect = 5.630e-25
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 303
            +A R E E   +T  RC+ VLRR+F E  V AP++   + WG D++A GSYS++  GS++EDM++L  PV   L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct:  108 EAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 208
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S3UVW7_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVW7_HETAK)

HSP 1 Score: 114 bits (284), Expect = 2.980e-23
Identity = 53/101 (52.48%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAK 303
            +A R E E   +T  RC+ VLRR+F E  V AP++   + WG D++A GSYS++  GS++EDM++L  PV   L FAGEAT+ RYPA+VHGA+LSG+REA+
Sbjct:  320 EAARLEAEAEEDTVKRCMDVLRRLFGEEYVQAPVNYEVTNWGQDRFAMGSYSYIARGSTTEDMKILAEPVQNKLFFAGEATNSRYPASVHGAYLSGIREAR 420
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A6N8YHE7_9ACTN (Amino_oxidase domain-containing protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YHE7_9ACTN)

HSP 1 Score: 99.0 bits (245), Expect = 1.980e-20
Identity = 50/99 (50.51%), Postives = 64/99 (64.65%), Query Frame = 1 
Query:   16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMIY 312
            E+ T  E   R +  LR +F +V  P P+   ++RWGSD W RGSYS++ VG   E  R + RPVG+ L FAGEAT  R+P+TVHGA LSG R A+ IY
Sbjct:   61 EQYTDEELTSRAVETLRAMFGDV--PKPVDVLSTRWGSDPWTRGSYSYLPVGVEFETYREMSRPVGERLFFAGEATHSRFPSTVHGALLSGRRAARQIY 157
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A8K0C5V2_9COLE (Uncharacterized protein n=1 Tax=Ignelater luminosus TaxID=2038154 RepID=A0A8K0C5V2_9COLE)

HSP 1 Score: 95.9 bits (237), Expect = 9.710e-20
Identity = 58/123 (47.15%), Postives = 68/123 (55.28%), Query Frame = 1 
Query:   16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPV------GQS-------LHFAGEATSVRYPATVHGAWLSGVREAKMIYYEL--NPDKKP 339
            E  T     GRC+ VLR IF +  VP P     +RW +D W+RGSYSFV VGSS  D  +L  PV      G S       L FAGE T   YPATVHGA+LSG+REA  I  ++  NP   P
Sbjct:    2 ENVTDDVIVGRCIAVLRGIFGQTGVPQPKETVVTRWRADPWSRGSYSFVAVGSSGSDYDLLASPVIPPNAQGVSVTTGPAKLFFAGEHTIRNYPATVHGAFLSGLREASRIADQIIGNPCHPP 124
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A8J8W0L6_9EURO (Lysine-specific histone demethylase 1 n=1 Tax=Penicillium sp. RFL-2021a TaxID=2839758 RepID=A0A8J8W0L6_9EURO)

HSP 1 Score: 104 bits (260), Expect = 2.150e-19
Identity = 56/113 (49.56%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    4 AFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREA-KMIYYELNPDKKP 339
            A++AE+ T  E      T LR +F   TVP PL    +RW SD + RGSYSFV  G+  ED   + RPVG +LHFAGEAT   +PATVHGA+LSG+R A ++I   L P + P
Sbjct:  737 AYQAEQSTDAEIVTEVTTQLRNVFKHATVPDPLEIVVTRWASDSFTRGSYSFVAAGAHPEDYETMARPVG-NLHFAGEATCGTHPATVHGAYLSGLRAAAEVIEATLGPIQIP 848
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A7S0PUI6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PUI6_MICPS)

HSP 1 Score: 100 bits (250), Expect = 2.220e-19
Identity = 52/104 (50.00%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:    4 AFRAERETAGETAGRCLTVLRRIFPE--VTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREAKMI 309
            A   ER  A       +TVLRRI+    VTVP P+ +  + WG+D++A GSYS + VG++ ED   L  PVG  L+FAGEAT  R+PAT+HGA+LSG+REA  I
Sbjct:  229 ALEFERSGAANVVAETMTVLRRIYERRGVTVPDPIDSKCACWGTDEFAYGSYSNISVGATGEDYDALAEPVGDGLYFAGEATMRRHPATMHGAFLSGMREAARI 332
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: A0A5N4AW63_PHOPY (Amino_oxidase domain-containing protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4AW63_PHOPY)

HSP 1 Score: 94.7 bits (234), Expect = 2.460e-19
Identity = 55/111 (49.55%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:   16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPV------GQS-------LHFAGEATSVRYPATVHGAWLSGVREAKMI 309
            E  T     GRC+ VLR IF +  VP P     +RW +D W+RGSYSFV VGSS  D  +L  PV      G S       L FAGE T   YPATVHGA+LSG+REA  I
Sbjct:    2 ENVTDDVIVGRCIAVLRGIFGQSGVPQPKETVVTRWRADPWSRGSYSFVAVGSSGSDYDLLASPVIPPNDQGVSVTSGPAKLFFAGEHTIRNYPATVHGAFLSGLREASRI 112
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BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Match: UPI001040CF8C (lysine-specific histone demethylase 1A-like n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001040CF8C)

HSP 1 Score: 95.1 bits (235), Expect = 4.480e-19
Identity = 52/100 (52.00%), Postives = 60/100 (60.00%), Query Frame = 1 
Query:   16 ERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGSYSFVRVGSSSEDMRVLGRPVGQS-----LHFAGEATSVRYPATVHGAWLSGVREA 300
            E  T     GRC+ VL+ IF    VP P     +RW +D +ARGSYSFV VGSS  D  +L  PV  S     L FAGE T   YPATVHGA+LSG+REA
Sbjct:   34 ENVTDDVIVGRCIAVLKSIFGHAAVPQPKECVVTRWRADPFARGSYSFVAVGSSGTDYDLLAAPVPGSPGDNRLFFAGEHTMRNYPATVHGAFLSGLREA 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9958.21606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIY4_9PHAE1.510e-11073.39PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LQQ1_ECTSI2.800e-7934.32PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S3UUG2_HETAK5.630e-2552.48Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3UVW7_HETAK2.980e-2352.48Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A6N8YHE7_9ACTN1.980e-2050.51Amino_oxidase domain-containing protein n=2 Tax=Ac... [more]
A0A8K0C5V2_9COLE9.710e-2047.15Uncharacterized protein n=1 Tax=Ignelater luminosu... [more]
A0A8J8W0L6_9EURO2.150e-1949.56Lysine-specific histone demethylase 1 n=1 Tax=Peni... [more]
A0A7S0PUI6_MICPS2.220e-1950.00Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A5N4AW63_PHOPY2.460e-1949.55Amino_oxidase domain-containing protein n=2 Tax=Ph... [more]
UPI001040CF8C4.480e-1952.00lysine-specific histone demethylase 1A-like n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9958contigEcto-sp13_S_contig9958:3..5681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score287.3
Seed ortholog evalue1.9e-74
Seed eggNOG ortholog2880.D8LQQ1
Model size2133
KEGG koko:K11450
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006325,GO:0006464,GO:0006476,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0008150,GO:0008152,GO:0008213,GO:0009987,GO:0016043,GO:0016569,GO:0016570,GO:0016571,GO:0016575,GO:0018022,GO:0018193,GO:0018205,GO:0019538,GO:0022622,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0035601,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0048364,GO:0048731,GO:0048856,GO:0051276,GO:0051568,GO:0071704,GO:0071840,GO:0098732,GO:0099402,GO:1901564
Exons6
EggNOG free text desc.SET domain
EggNOG OGsCOG1231@1,COG2940@1,KOG0029@2759,KOG1084@2759
Cds size2133
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9958.21606.1prot_Ecto-sp13_S_contig9958.21606.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9958 3..5681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.7505267-CDS-Ecto-sp13_S_contig9958:2..561681464255.7505267-CDS-Ecto-sp13_S_contig9958:2..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 3..56 -
1681464255.7645578-CDS-Ecto-sp13_S_contig9958:676..8361681464255.7645578-CDS-Ecto-sp13_S_contig9958:676..836Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 677..836 -
1681464255.775632-CDS-Ecto-sp13_S_contig9958:1571..16901681464255.775632-CDS-Ecto-sp13_S_contig9958:1571..1690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 1572..1690 -
1681464255.786985-CDS-Ecto-sp13_S_contig9958:2760..42481681464255.786985-CDS-Ecto-sp13_S_contig9958:2760..4248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 2761..4248 -
1681464255.7989926-CDS-Ecto-sp13_S_contig9958:4775..49321681464255.7989926-CDS-Ecto-sp13_S_contig9958:4775..4932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 4776..4932 -
1681464255.8103242-CDS-Ecto-sp13_S_contig9958:5526..56811681464255.8103242-CDS-Ecto-sp13_S_contig9958:5526..5681Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9958 5527..5681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9958.21606.1

>prot_Ecto-sp13_S_contig9958.21606.1 ID=prot_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=711bp
QAFRAERETAGETAGRCLTVLRRIFPEVTVPAPLHAAASRWGSDKWARGS
YSFVRVGSSSEDMRVLGRPVGQSLHFAGEATSVRYPATVHGAWLSGVREA
KMIYYELNPDKKPRPRGRKPKNKNGQNVESVAPDTSSSSGGGAGSTTTST
AISDTSTSTATSSAAATTATPAAAAAASAPAAVSAAAPAPAPATSDDDAA
AAAAAPSAAAAAAAAAPSATAAPSAATAPSAAATAAPAAAAPAAAAPAAA
AATPSSAASDAAAAVPAVAAPSGAAPAAAAPAIAPTGPSPPSPSTAAPAA
AKKAVVEGSAVAGKGQGATVDDAPAGSPSSTPANAPSTPAAPAAAAAAEP
AADSSAAGPSAVGAGSTAAAAAAAAAAAAAAAESSTASSGLKATAVAAGR
AKGPDMGKPEESDNGVIAARVGVEKAAAGKAGGGGSGSDGATATAGFAAA
PPRTTTATPVTTRRSRSSSSSAAGAAAATPAADPGLPADDGDANASDDSA
SMPIAARAAARRRRSAAAAAAAAAAVDGEASSSSLVATPATTRRRAAAAA
VAPTTADRKEEEEEDDDDGDEEGGAPAETEENGGTTEDPKEDGTFCHMCR
RGKSDPVAAKEGRIIGPFRGVVVRGQPRQLWVHRKCAEYSPEVEKVDGEL
ENVAKAIRRGASLKCFACGKKGATVGCFNGRCRTVYHVPCARSHAGWDFE
KADRGKEFYCL
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mRNA from alignment at Ecto-sp13_S_contig9958:3..5681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9958.21606.1 ID=mRNA_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5679bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9958:3..5681- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGTTTCGCGCGGAGAGGGAAACCGCGGGTGAAACGGCCGGGCGGTG
CCTGACGGTATTGCGCCGCATTTTCCCGGAGGTGACAGTCCCGGCTCCCC
TGCACGCGGCGGCTTCTCGGTGGGGTTCGGACAAGTGGGCAAGAGGCAGT
TACAGGTGTGCTGCTTTTTGACTCGAAAACTGACTGGCCTCGATGGCTGT
GAAATACATGTGTGCATACAAAGGTGGCCTTTTCTTCACGTGTGACGAGA
AAGTGAGAGAGAGAAACAGGAGGGGGGCGGAGAGAGAGACAGAGAGAGAG
ACAGAGAGATGGTGGTTGTGATATAAATGCGATGGCGTCGTGCGCAAGTT
TTTTTCATATGACGCAGCGACACAGTTGTAGTCAGCGCCATGTCGTTTTC
GATTCGACACACGTGATGGGGAGATTATTGTTTTCTTGGTACGGGCTGGG
ACATCGCGCCTTTACATGAGTGTTTTTCCTCCTAGTACATGTGTACGACT
CGGGTCAGTCGCACCGGTACGGATACGAGAAGGTACCGCTGGGCACAGGC
CGGAACAGTTTCGACGTGAAGACAAAAGCGGCATACAGTGGGGGGGGGCT
GTCTTGAACCGTTGGAAGAGTGCTCGTGCCCGGAAAGGCCCGGTTTGTCC
GGCTGGCACAGCTATTGCTTCATGTACAACTGGACGTTTGACCTTCTACG
ACCCCGAACCTCCCTCCTTTTTGGCCCCAACCCCCAACCTCCCCACCAGC
TTTGTTCGCGTTGGATCGTCGTCAGAGGACATGAGGGTGCTAGGGCGTCC
CGTCGGGCAGAGCCTTCACTTCGCGGGGGAGGCGACGAGCGTGAGGTACC
CGGCCACCGTCCACGGTGCCTGGTTGTCTGGGGTCCGCGAGGCGAAAATG
ATCTATGTGAGCGCGGGCGGCGGCGGTCGTGGTTATCGTGATGGTGATGG
TGGTGGTGGTGATGTGGTCGATGTCATCGCTGTCGTGTGCGTTACCATTG
TGGTTGTCGTGTTACTTATCGGTGTCGGTGTCGTGTCGGTGATGTCGGTG
GCGGTGGCCGTGGTGGTGGTGATCGTCATCGTCGTTTCCGTTGTCGTTTG
TGCTGTCGTTGCAATCGTGATGCTTGTCATCTTTGCTTTGGAGCCGTGTG
TTTTGTGTATTATTGTTGTGCTCTCTTCCCATCTGTCTTAGCTGCAGCCC
CACGTGCTGTGAGGGGGGTTTACCCCGGTCCGGTAAGGCACAGAGCTTTG
GGTGTTGGCCGCTCTCCGCACACCTCGAGGCGTATTTGATGCCAATGCGA
CAAGCTCAGTTTGCTGGGGCAACACGCGGCAGCGGCCCAGCAGAAGTCAC
ACACATCCATGAGCTTCAGATTTTCGCCAAAACCTCTTCTGAAGCCAACT
TTCCCCCTCCCCCCCTCCGCGTGCACACCACAGTACGAGCTGAACCCCGA
CAAGAAGCCTCGCCCTCGCGGCAGAAAACCCAAGAATAAAAATGGCCAGA
ACGTTGAGAGCGTCGCCCCCGACACGAGCAGCAGCAGCGGCGGTGGAGCT
GGCTCTACGACTACCAGCACCGCCATCAGCGACACGTCCACCTCCACCGC
AACGAGCTCTGCTGCCGCCACGACTGCTACACCTGCTGCTGCTGCGGCGG
CCTCTGCACCTGCTGCTGTTTCTGCTGCGGCACCTGCACCTGCACCTGCA
ACATCTGATGATGATGCTGCTGCTGCTGCTGCGGCACCTTCTGCTGCTGC
TGCTGCTGCTGCCGCTGCACCTTCTGCTACTGCTGCACCCTCTGCTGCTA
CTGCACCTTCTGCTGCTGCTACTGCTGCACCTGCTGCCGCTGCACCTGCG
GCCGCTGCACCTGCCGCTGCGGCCGCAACACCTTCATCTGCGGCATCTGA
TGCTGCTGCTGCTGTTCCTGCTGTTGCTGCGCCTTCTGGTGCTGCACCTG
CGGCCGCTGCACCTGCCATAGCGCCCACTGGCCCTAGTCCACCATCTCCT
AGCACCGCCGCCCCGGCCGCAGCAAAGAAGGCCGTCGTCGAAGGTTCCGC
CGTTGCCGGGAAGGGACAAGGTGCCACTGTCGATGATGCCCCCGCCGGGT
CCCCGTCCTCCACTCCCGCGAATGCGCCGTCCACGCCCGCCGCCCCTGCC
GCCGCCGCCGCCGCCGAGCCGGCCGCGGATTCTTCTGCCGCTGGACCCTC
GGCGGTTGGTGCTGGCTCTACTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGAGTCTTCCACGGCTAGCAGTGGCCTGAAGGCG
ACTGCCGTGGCGGCAGGGAGAGCGAAAGGGCCGGACATGGGAAAACCGGA
GGAGAGTGATAACGGGGTCATAGCGGCTAGGGTTGGGGTAGAAAAGGCGG
CGGCTGGCAAGGCTGGCGGGGGCGGCAGCGGCAGCGACGGTGCTACCGCA
ACAGCTGGCTTCGCGGCGGCGCCGCCTCGTACCACCACCGCCACCCCGGT
TACCACGCGCAGAAGCCGTTCTTCTTCTTCTTCTGCCGCCGGCGCAGCAG
CCGCGACACCAGCGGCGGACCCCGGATTACCGGCGGACGATGGCGACGCA
AACGCCTCAGACGATTCAGCTTCCATGCCCATCGCCGCCCGTGCCGCCGC
CCGCCGCCGCCGCAGCGCTGCCGCCGCCGCCGCCGCCGCCGCCGCTGTCG
ACGGGGAGGCATCATCCTCTTCGCTGGTTGCCACGCCCGCTACGACGCGC
CGCCGCGCGGCTGCGGCCGCCGTCGCCCCAACGACGGCCGATCGGAAGGA
GGAGGAGGAGGAGGACGACGACGACGGCGACGAGGAGGGGGGGGCGCCGG
CGGAGACGGAGGAGAACGGAGGCACGACGGAGGACCCCAAGGAGGACGGG
ACCTTTTGCCACATGTGCAGGGTACGGACGAACCTAACCCATGTCGCTGA
GACCCTAACTCTCATGGGAGAACACGCGCGCGCGCACGTATGTGTGTTTG
TGTGTTTCTGTGTGTCACTTTATTATTACCGTCGACCGCACTTATCCGCT
GACCAATGAAAATACGTCAGTCTCAAACGGCTAAAACACAAAACGCATCT
GTAAACGCCATTACGTGGGACCCCATGTGTGTTGTCTTATTTGGCATCGA
CCGCGCTCATCGGTTGAGCAATGAGAATGAAAAGGCGTCCGTCTTGTAGC
GGGATAAACAAAACACCAACATTTTTTTTTCATAAAAGAGGGGTAAGATG
TGTCCGTGTCGTGCGTTGAGTCGGTCGGTGTAGTGCTTTGTTCGGAGCGA
CCGCCGCCACGGTTACGGTCTCCGCGTTTTATCATGAAGCCGAGATGGAA
AGTTGTGCTACGATTTGGGAGATGCGCTAAAGGCCCGCCGCACGTATTGA
CCGACCACCGGTGCGGCAGGCGAGGTGCTTTCGCCTGAAAATACTAGGCT
GAGGTGCTTCCACTCCCGCGCTCAACTCACCGCCCTGCGTCTATATCCCG
ACACCCCCCCCCCCCCCCCCTCCCGGCCGTGGTGACCCCGCACCAACTGC
ACGTCTTAAGCTTAAGGTTCTATCCGGTTATCTATGGTTGCACGTGTATT
CACAACACTCACTCGTTGCGTGATCGTGTAATTTTATATTTTTGCTCAGA
GGGGAAAGTCCGACCGACTGCACGTCTTGACTTCTATCCGGTCATCTACG
TGTGTTCACCTAACCCTCACTCATTGTGTGATTCTGTTTGTTTATGTTTT
TGCTGAGAGGGGAAAGTCCGACCGCCTGCGCATCTTGAAGCTTCTATCCG
GTTATCTATGAAGCTATCACGTGTTGTTGCCACACTCACTTACTTATTGT
GTGATAAAAAGTTTGTTTGTGTTTTTGTTCAGAGTGGAAATTCCGACCGC
CTGCACATCTTAGAGCTTCTATCCGGGTATCCACGTGTATTCACCACACT
CACTCGTTGTGTGATTTGTGTTTGTTTGAATTTTCGTTCAGAGGGGGAAG
TCGGACCCCGTCGCGGCGAAGGAAGGCCGCATTATCGGACCCTTCCGAGG
GGTGGTCGTGAGGGGGCAGCCGCGCCAGCTGTGGGTGCACAGGAAGTGCG
CGGAATACAGGTGTGTACGTGCGTACGTGCGTGTGCATGTTGTTGTTGTT
GTTGTTATTTTTGTTGTTGCTGCTGTTGTTGTCTTCATTACACTCGTATG
TCAGTTGCTAGTCCCAAAATCTAGGTAGGACTCGGTCAGTAGTCACGGAA
AGGCTAGAGCCATCAGAAAATGTAAAGAACACGCAGACTTAGCAACAAAA
TGGTACGGATGTTTTTTGAACTGGCATCGGCCGCGCCAGCCGGCCGAACA
AATAAAAATGCGTCAGTCTATCGCGGGACATGAAACATGAACACGGTTCC
TACTGATAGGGTTCTACCGACGTGTGTTTGCGTGTGTGTCTTTGTGCATA
GGCATCGACAGCGCCAACAGGTTTGCTAAGGAGTATACATGCGGGTAATA
TCGCAGAACGCATGTACCTGCGTTGTGGTATTTCTTGCTGATGTTCACTG
CTTGCCCTCTCTGCCGAGCCTGTCTTTGTGCTGTCGCTCTTGTCGGCTCT
GCCTTTCTGCGGGCTGCCGCTCCTAGCTACTCTTGGTGCTGCTGCAGCCG
TTTCTTGCGCTGCTGGCACCCTTACTCCGCCCCGCCATGGGGGAGTCTGT
GCTGCTCTCCAGATCAAAGATATATACCGTCGCAAGAGCAGAAGGTTGTG
TGTGTGTGTGTGTGTGTGTCCGTAACCAAGTTAGCAGCATGGCAACGAAC
AACGCCTTTTACACGTGTGCGTGCCTCCCATACGAAAAACAAAAGCCCCG
AGGTGGAGAAGGTTGACGGAGAGCTCGAGAACGTGGCCAAGGCCATCAGG
CGGGGCGCCTCGCTCAAGTGCTTCGCCTGCGGCAAGAAGGGGGCCACCGT
GGGGTGCTTCAACGGCCGGTGCAGGACTGTGTACCACGTGCCGTGCGCGA
GATCGGTGAGTTGTTGTGTGTGTTTTTTCGCCTTGTTTCTGATAAGGTGT
GTCGTTGTTGAAAGTTTTTTTTCTGTTTTTTTTTTTTATAGGGGGGGAGG
AAGGGGGTGGTACATTTTGCCTGGGTGATTTTTAATGGACGAGCTTTGCC
CATCGGCAAGAAACCGTGCCGAGGCGGAGGAATGTTGTCAGCTCGAAAGA
TCGAGAGGGGTGGGGGGTGGGGGATTGGGCGTTCGCCTGTCACGGACGGG
GCAAAGAAGGGTGGGAATATCCAACATAGACAAACAAGTGGGTGCCCTCG
TCTTGGTCTCCAATCCCCACGACTGCGGTACTCCAAGCACCCGTTTGTTC
GCTGCTCGACCGTGAGAAATTCCCTTTCGACCAACCAGCCCCGGCGGTGC
GGCATGTTTGCCCCTAGGCGTAGTGCGATGGGCCATTATTCTCCGGATTT
CCGACTGAAGCGGTAGCAGGTGCGGGGAAGTGTGCTTGATTTTCTTCTGC
CGATGCCGTCGTGGGAGGTCGAACTTCGCGTACCGTTGGATGTCGGTTTC
AAGAAATGACTTTTTTTTTACTCCGATTTTGTGCGCCGTGCTCATTTATT
CATATTTTTGTTGCCGTTCGTGCAGCACGCCGGGTGGGACTTCGAGAAGG
CCGACAGAGGGAAGGAGTTCTACTGCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9958:3..5681-

>mRNA_Ecto-sp13_S_contig9958.21606.1 ID=mRNA_Ecto-sp13_S_contig9958.21606.1|Name=mRNA_Ecto-sp13_S_contig9958.21606.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2133bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9958:3..5681- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCGTTTCGCGCGGAGAGGGAAACCGCGGGTGAAACGGCCGGGCGGTG
CCTGACGGTATTGCGCCGCATTTTCCCGGAGGTGACAGTCCCGGCTCCCC
TGCACGCGGCGGCTTCTCGGTGGGGTTCGGACAAGTGGGCAAGAGGCAGT
TACAGCTTTGTTCGCGTTGGATCGTCGTCAGAGGACATGAGGGTGCTAGG
GCGTCCCGTCGGGCAGAGCCTTCACTTCGCGGGGGAGGCGACGAGCGTGA
GGTACCCGGCCACCGTCCACGGTGCCTGGTTGTCTGGGGTCCGCGAGGCG
AAAATGATCTATTACGAGCTGAACCCCGACAAGAAGCCTCGCCCTCGCGG
CAGAAAACCCAAGAATAAAAATGGCCAGAACGTTGAGAGCGTCGCCCCCG
ACACGAGCAGCAGCAGCGGCGGTGGAGCTGGCTCTACGACTACCAGCACC
GCCATCAGCGACACGTCCACCTCCACCGCAACGAGCTCTGCTGCCGCCAC
GACTGCTACACCTGCTGCTGCTGCGGCGGCCTCTGCACCTGCTGCTGTTT
CTGCTGCGGCACCTGCACCTGCACCTGCAACATCTGATGATGATGCTGCT
GCTGCTGCTGCGGCACCTTCTGCTGCTGCTGCTGCTGCTGCCGCTGCACC
TTCTGCTACTGCTGCACCCTCTGCTGCTACTGCACCTTCTGCTGCTGCTA
CTGCTGCACCTGCTGCCGCTGCACCTGCGGCCGCTGCACCTGCCGCTGCG
GCCGCAACACCTTCATCTGCGGCATCTGATGCTGCTGCTGCTGTTCCTGC
TGTTGCTGCGCCTTCTGGTGCTGCACCTGCGGCCGCTGCACCTGCCATAG
CGCCCACTGGCCCTAGTCCACCATCTCCTAGCACCGCCGCCCCGGCCGCA
GCAAAGAAGGCCGTCGTCGAAGGTTCCGCCGTTGCCGGGAAGGGACAAGG
TGCCACTGTCGATGATGCCCCCGCCGGGTCCCCGTCCTCCACTCCCGCGA
ATGCGCCGTCCACGCCCGCCGCCCCTGCCGCCGCCGCCGCCGCCGAGCCG
GCCGCGGATTCTTCTGCCGCTGGACCCTCGGCGGTTGGTGCTGGCTCTAC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGAGT
CTTCCACGGCTAGCAGTGGCCTGAAGGCGACTGCCGTGGCGGCAGGGAGA
GCGAAAGGGCCGGACATGGGAAAACCGGAGGAGAGTGATAACGGGGTCAT
AGCGGCTAGGGTTGGGGTAGAAAAGGCGGCGGCTGGCAAGGCTGGCGGGG
GCGGCAGCGGCAGCGACGGTGCTACCGCAACAGCTGGCTTCGCGGCGGCG
CCGCCTCGTACCACCACCGCCACCCCGGTTACCACGCGCAGAAGCCGTTC
TTCTTCTTCTTCTGCCGCCGGCGCAGCAGCCGCGACACCAGCGGCGGACC
CCGGATTACCGGCGGACGATGGCGACGCAAACGCCTCAGACGATTCAGCT
TCCATGCCCATCGCCGCCCGTGCCGCCGCCCGCCGCCGCCGCAGCGCTGC
CGCCGCCGCCGCCGCCGCCGCCGCTGTCGACGGGGAGGCATCATCCTCTT
CGCTGGTTGCCACGCCCGCTACGACGCGCCGCCGCGCGGCTGCGGCCGCC
GTCGCCCCAACGACGGCCGATCGGAAGGAGGAGGAGGAGGAGGACGACGA
CGACGGCGACGAGGAGGGGGGGGCGCCGGCGGAGACGGAGGAGAACGGAG
GCACGACGGAGGACCCCAAGGAGGACGGGACCTTTTGCCACATGTGCAGG
AGGGGGAAGTCGGACCCCGTCGCGGCGAAGGAAGGCCGCATTATCGGACC
CTTCCGAGGGGTGGTCGTGAGGGGGCAGCCGCGCCAGCTGTGGGTGCACA
GGAAGTGCGCGGAATACAGCCCCGAGGTGGAGAAGGTTGACGGAGAGCTC
GAGAACGTGGCCAAGGCCATCAGGCGGGGCGCCTCGCTCAAGTGCTTCGC
CTGCGGCAAGAAGGGGGCCACCGTGGGGTGCTTCAACGGCCGGTGCAGGA
CTGTGTACCACGTGCCGTGCGCGAGATCGCACGCCGGGTGGGACTTCGAG
AAGGCCGACAGAGGGAAGGAGTTCTACTGCCTC
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