mRNA_Ecto-sp13_S_contig9956.21604.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9956.21604.1
Unique NamemRNA_Ecto-sp13_S_contig9956.21604.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 3.020e-154
Identity = 313/343 (91.25%), Postives = 316/343 (92.13%), Query Frame = 1 
Query:    1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSN 1020
            LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRA DAA  XXXXXXXXXXX   VAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRA QLEAEHHGSVVVGSGRGXXXXXXXXX   SPQAQIASLHRRAGRCILLLAKFVT+ KEEENGAASGTT VRVSVEVGPDRVPVLDV LPLSTVLGDLRCEVARRFRVP EFLEL RV+RRKGN TTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAP A      XXXXXXXXXXXXXXXXSN ASAGATNAPPPGVELLAR+IGEPSFRGD ASGGSN
Sbjct: 1051 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAGDAAAPXXXXXXXXXXXDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAMQLEAEHHGSVVVGSGRGXXXXXXXXXXXXSPQAQIASLHRRAGRCILLLAKFVTKSKEEENGAASGTTRVRVSVEVGPDRVPVLDVRLPLSTVLGDLRCEVARRFRVPAEFLELGRVVRRKGNATTEVLDQDGASLEALGLVVAGTGSNLPNHLPTPSPSKTSAP-AXXXXXXXXXXXXXXXXXXXXXXSNNASAGATNAPPPGVELLARVIGEPSFRGDLASGGSN 1392
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BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 4.170e-132
Identity = 283/356 (79.49%), Postives = 291/356 (81.74%), Query Frame = 1 
Query:    1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKDDRV 1059
            LKSKAARIGAGFVDTCLHYLQVSVSR+RSLRGR+ADA XXXXXXXXX       V VADSGR                                 MMGGASSRSTSVEGRDVTRAKQLEAEH G VVVGSGRGXXXXXXXXX   SPQAQI SL+RRAGRCILLLAKFVTR KEEENG ASGTTTVRVSVEVGPDRVPVLDV LPL+TVLGDLRCEVARRFRV  EFLELARV+RRKGNTTTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAPVA VAAT XXXXXXXXXXXXXXXX  X     TNAPPPGVELLAR+ GEPSFRGDQASGG+NGNSSKAP+KDDRV
Sbjct:   94 LKSKAARIGAGFVDTCLHYLQVSVSRMRSLRGRSADAXXXXXXXXXXSSEEDTAVGVADSGR---------------------------------MMGGASSRSTSVEGRDVTRAKQLEAEHQGGVVVGSGRGXXXXXXXXXXXXSPQAQIRSLYRRAGRCILLLAKFVTRSKEEENGDASGTTTVRVSVEVGPDRVPVLDVRLPLNTVLGDLRCEVARRFRVQAEFLELARVVRRKGNTTTEVLDQDGASLEALGLVVAGTGSNLPNHLPTTSPSKTSAPVAHVAATXXXXXXXXXXXXXXXXXXXXXXXXXTNAPPPGVELLARIFGEPSFRGDQASGGTNGNSSKAPKKDDRV 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI3.020e-15491.25Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.170e-13279.49USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9956contigEcto-sp13_S_contig9956:1001..3526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score494.2
Seed ortholog evalue5.1e-137
Seed eggNOG ortholog2880.D8LU88
Model size1071
KEGG koko:K11840,ko:K11869
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5077@1,KOG1866@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-14_004080.1
EC3.4.19.12
Cds size1071
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.5350654-CDS-Ecto-sp13_S_contig9956:1000..12331681464255.5350654-CDS-Ecto-sp13_S_contig9956:1000..1233Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9956 1001..1233 +
1681464255.5485935-CDS-Ecto-sp13_S_contig9956:1817..21191681464255.5485935-CDS-Ecto-sp13_S_contig9956:1817..2119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9956 1818..2119 +
1681464255.5600977-CDS-Ecto-sp13_S_contig9956:2494..26491681464255.5600977-CDS-Ecto-sp13_S_contig9956:2494..2649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9956 2495..2649 +
1681464255.5715165-CDS-Ecto-sp13_S_contig9956:3145..35261681464255.5715165-CDS-Ecto-sp13_S_contig9956:3145..3526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9956 3146..3526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9956.21604.1prot_Ecto-sp13_S_contig9956.21604.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9956 1001..3526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9956.21604.1

>prot_Ecto-sp13_S_contig9956.21604.1 ID=prot_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAAPAPLPAASSSE
EDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGA
SSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGSAAAAAAAASPQAQIAS
LHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVC
LPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLE
ALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTTTVNSSFSSSSSPS
PGSNNASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKD
DRVSSST
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mRNA from alignment at Ecto-sp13_S_contig9956:1001..3526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9956.21604.1 ID=mRNA_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9956:1001..3526+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGTCCAAGGCCGCCAGGATCGGCGCGGGGTTCGTGGACACGTGCCT
CCACTACCTACAGGTGTCCGTGTCCCGGATACGGTCGCTCCGCGGCCGCG
CCGCGGACGCTGCTGCTCCTGCGCCGCTGCCGGCGGCATCGTCATCGGAA
GAAGATACTGCTGTTGCCGTTGCCGACAGCGGAAGGTTGAGGGAAGGGGC
GAGCGGGTCGCGGATCGGGTCGCGGCATTTCCGGTGAGTTTTTTTTTTGT
CACCCTGGCAGTGGTGGACTGGTGATGCTTGAAGTATCCGGCGTTTGCTT
TTTGTGGTGAGGTTATTGTTTGGGGCCTGGGAGAGACCTCTCTTCTCCCT
CGGACTTGTCGGGAACACCCGGCGACAGAGAGATTCCACAACAAGATAGG
GTGCTTCTATGTTCGTGGTGGGTGGCGGGCGTCACGGCGTTCTGTGTGTG
TTTTTTTTTTCGTCTACAAAGGCGAATGTCCACCTGATGGGAAGCTCAGG
CGATAAGACGCTTCAGTAGTAATAGCTGGCTGTGGTTCCTCGGTTCCCCG
AATTGCTTCGCACGGAGAGTGTTAACGGTTCGCCGCTGGATGAATCAATG
CCTTCCACAACCTGCCAAGGTAGGGGCGCACGGAGATGTGCGCGCGTGAC
GTTCCTCACCGTGTATCGCGTCGAGACAGTAAGGCATGCCTGCCAATTTT
TTCGGCAAGAAGGCTTGCTCCAAGCTGCTCGACGTCAAATCTCATGTAAG
GAACCCCCTCCCTCCCTCCCCCCCGCGCGCGACCCGCCCAACCCCCCCCA
CACGCCGACCTCGTCAGGAGGCGATCTTCCAGCCTCCCCCCGGAGAAGGG
CAGCACCCGTCAGGGTAGAATGATGGGCGGCGCGTCGTCGAGGTCGACGA
GCGTGGAGGGGAGGGACGTGACGAGGGCGAAGCAGCTCGAAGCGGAACAT
CACGGTAGTGTGGTGGTGGGGTCCGGCCGGGGGAGCGCGGCGGCGGCGGC
GGCGGCGGCATCGCCGCAAGCCCAGATCGCGTCCCTGCATCGAAGAGCCG
GGCGATGCATATTGCTGCTGGCGAAGTTCGTGACCAGGATCAAGGAGGAG
GAGAACGGGGCCGCCTCAGGTGTGTGGCTTGACACGAACGGCGGAGCGGG
GAGGCGAACGAGGGTAGCATTAACCTACCACCTTGGTTTAACGCACTGTG
CTGCTATCTTTGTGGGAGAGAGAGGGAGTATGCGGCACAATCGGTACGTG
GTGGTGTGGTTGTGGTCGCGCAACCACCAGCCACTCGACATCTCCACATC
GGCTACTGTGGTTTTAGAGGATGCACACCTCGTTGTCTGCCGCAGTGATA
ACTTTATTCCCCCTCTTTGTCCCGCCCGCGACATGTATTCGCACCCGATT
GTTTTCCATTACCGAGACCTGCCGCGGTCGCGAATGTTTACACTCTTTGT
CAACTGTCTGACTGCTTGCATCGTTCGGCGTCGGCGTCGCGTAGGCACCA
CCACGGTGCGGGTGAGCGTTGAGGTCGGACCCGATCGCGTGCCGGTGCTA
GACGTGTGCCTGCCGTTGAGCACGGTCCTGGGAGACCTGCGGTGTGAGGT
GGCTCGGCGCTTTCGAGTGCCGGTGGAGTTCCTGGAGCTGGCCAGAGTGG
TGAGCCGGCTTGTGGTTTATTCCCTTGGCACTCCGATCGGTCTCTTCTTG
CCAGGCGTGTTATCATCTCGATCCGCGGTTGTGTTTGGTTGCAGTAAAGG
GGGCTGAAATTCTTGGGGGGGGGGGGTAGATTCCATGGGGAATGTTGTAG
TACGGGGAGATGGAGCGCGGCGCGCGGTGATGTTCGAGATGACCGTCTCG
CCTCCTACACCGCGGTGCATATCTCCCAACCCGTTTTCCCTCTGTCCCGC
CTTCACCAAGGTTGGTAGGGCGCACGAACAGAAGGGTGGACAACCGGTTT
CGGCAGCAGTCAGTTGTCGCCCTACTCTTCGGTCCGTAGCTCGCTGCTCT
TGCCCGCTGCTTCTCCTCTGCCGGCGCTTGACACTGCACTGCTGCTGCTG
CCCTTGGCCGTCGCCGCCTCCGCCTGCCGTCGCCGCCTCCCGCTCGTTCT
CTCTCTCTCGCGCGCGCGGGCGCGTAAAACCACGCGGATGCACAGATTCG
CCGTAAGGGCAACACGACCACAGAGGTACTGGACCAGGACGGGGCCTCGC
TAGAGGCTCTCGGCCTCGCCGTCGCCGGTACCGGGAGCAATCTCCCGAAC
CATCTCCCGACCGCAAGCCCGTCGAAGACGTCGGCTCCGGTGGCAGATGT
CGCCGCCACCACCACCACCGTTAACTCGTCCTTCTCCTCGTCCTCGTCCC
CTTCCCCGGGTTCCAACAACGCCTCCGCGGGTGCTACGAACGCCCCGCCC
CCGGGCGTCGAGCTGCTGGCGAGAATGATCGGCGAGCCCTCTTTCCGTGG
CGATCAAGCGAGCGGCGGCAGCAACGGCAATAGCAGCAAGGCGCCGAGGA
AAGACGACCGCGTCTCAAGTTCTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9956:1001..3526+

>mRNA_Ecto-sp13_S_contig9956.21604.1 ID=mRNA_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9956:1001..3526+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCAAGTCCAAGGCCGCCAGGATCGGCGCGGGGTTCGTGGACACGTGCCT
CCACTACCTACAGGTGTCCGTGTCCCGGATACGGTCGCTCCGCGGCCGCG
CCGCGGACGCTGCTGCTCCTGCGCCGCTGCCGGCGGCATCGTCATCGGAA
GAAGATACTGCTGTTGCCGTTGCCGACAGCGGAAGGTTGAGGGAAGGGGC
GAGCGGGTCGCGGATCGGGTCGCGGCATTTCCGGAGGCGATCTTCCAGCC
TCCCCCCGGAGAAGGGCAGCACCCGTCAGGGTAGAATGATGGGCGGCGCG
TCGTCGAGGTCGACGAGCGTGGAGGGGAGGGACGTGACGAGGGCGAAGCA
GCTCGAAGCGGAACATCACGGTAGTGTGGTGGTGGGGTCCGGCCGGGGGA
GCGCGGCGGCGGCGGCGGCGGCGGCATCGCCGCAAGCCCAGATCGCGTCC
CTGCATCGAAGAGCCGGGCGATGCATATTGCTGCTGGCGAAGTTCGTGAC
CAGGATCAAGGAGGAGGAGAACGGGGCCGCCTCAGGCACCACCACGGTGC
GGGTGAGCGTTGAGGTCGGACCCGATCGCGTGCCGGTGCTAGACGTGTGC
CTGCCGTTGAGCACGGTCCTGGGAGACCTGCGGTGTGAGGTGGCTCGGCG
CTTTCGAGTGCCGGTGGAGTTCCTGGAGCTGGCCAGAGTGATTCGCCGTA
AGGGCAACACGACCACAGAGGTACTGGACCAGGACGGGGCCTCGCTAGAG
GCTCTCGGCCTCGCCGTCGCCGGTACCGGGAGCAATCTCCCGAACCATCT
CCCGACCGCAAGCCCGTCGAAGACGTCGGCTCCGGTGGCAGATGTCGCCG
CCACCACCACCACCGTTAACTCGTCCTTCTCCTCGTCCTCGTCCCCTTCC
CCGGGTTCCAACAACGCCTCCGCGGGTGCTACGAACGCCCCGCCCCCGGG
CGTCGAGCTGCTGGCGAGAATGATCGGCGAGCCCTCTTTCCGTGGCGATC
AAGCGAGCGGCGGCAGCAACGGCAATAGCAGCAAGGCGCCGAGGAAAGAC
GACCGCGTCTCAAGTTCTACC
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