mRNA_Ecto-sp13_S_contig9955.21603.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9955.21603.1
Unique NamemRNA_Ecto-sp13_S_contig9955.21603.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9955.21603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9955contigEcto-sp13_S_contig9955:2371..2859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.4789221-UTR-Ecto-sp13_S_contig9955:2370..24971681464255.4789221-UTR-Ecto-sp13_S_contig9955:2370..2497Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9955 2371..2497 +
1681464255.5043046-UTR-Ecto-sp13_S_contig9955:2797..28591681464255.5043046-UTR-Ecto-sp13_S_contig9955:2797..2859Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9955 2798..2859 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.4909558-CDS-Ecto-sp13_S_contig9955:2497..27971681464255.4909558-CDS-Ecto-sp13_S_contig9955:2497..2797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9955 2498..2797 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9955.21603.1prot_Ecto-sp13_S_contig9955.21603.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9955 2498..2797 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9955.21603.1

>prot_Ecto-sp13_S_contig9955.21603.1 ID=prot_Ecto-sp13_S_contig9955.21603.1|Name=mRNA_Ecto-sp13_S_contig9955.21603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MTTLLVLNPPASLGQSRGDLSLLLSRACCARSQCIRSTQSFGNLGGVCGM
HGGPNGVAGEGVHLSATTLLWWSGMSDRGEQRGAMMILQPSICRSHCCT*
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mRNA from alignment at Ecto-sp13_S_contig9955:2371..2859+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9955.21603.1 ID=mRNA_Ecto-sp13_S_contig9955.21603.1|Name=mRNA_Ecto-sp13_S_contig9955.21603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9955:2371..2859+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCTCTCCTCGCTGCAAGTGTACGTGCGCGTGTGACTGCAGGTAGAAGG
GTAGACTGGTTGTTCACGCCGCGTGGCTGAAGTTGGATAAAGTTGTATAG
AGTTTACTTCAACAGCAGCAGCAGCATATGACGACTCTCTTGGTGCTGAA
TCCCCCAGCATCTCTGGGGCAATCTCGGGGCGACCTGTCACTGCTGTTGA
GCCGTGCTTGCTGTGCACGATCGCAGTGCATCCGAAGCACACAGAGCTTC
GGGAACCTCGGTGGTGTGTGTGGCATGCATGGTGGGCCGAATGGTGTAGC
TGGGGAAGGTGTCCACCTTAGTGCGACGACTCTCCTGTGGTGGTCAGGGA
TGAGCGACAGAGGTGAGCAGCGAGGTGCAATGATGATACTTCAACCGTCG
ATTTGCCGCTCTCACTGCTGTACGTAACCACACCCTGGATAACACCCTGT
TGGACAGGCTATTGGTCGTCAGAATAGGTATTGGAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9955:2371..2859+

>mRNA_Ecto-sp13_S_contig9955.21603.1 ID=mRNA_Ecto-sp13_S_contig9955.21603.1|Name=mRNA_Ecto-sp13_S_contig9955.21603.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9955:2371..2859+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACTCTCTTGGTGCTGAATCCCCCAGCATCTCTGGGGCAATCTCG
GGGCGACCTGTCACTGCTGTTGAGCCGTGCTTGCTGTGCACGATCGCAGT
GCATCCGAAGCACACAGAGCTTCGGGAACCTCGGTGGTGTGTGTGGCATG
CATGGTGGGCCGAATGGTGTAGCTGGGGAAGGTGTCCACCTTAGTGCGAC
GACTCTCCTGTGGTGGTCAGGGATGAGCGACAGAGGTGAGCAGCGAGGTG
CAATGATGATACTTCAACCGTCGATTTGCCGCTCTCACTGCTGTACGTAA
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