mRNA_Ecto-sp13_S_contig99503.21598.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99503.21598.1
Unique NamemRNA_Ecto-sp13_S_contig99503.21598.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: UPI001C3C2415 (hypothetical protein n=1 Tax=Pseudomonas fakonensis TaxID=2842355 RepID=UPI001C3C2415)

HSP 1 Score: 66.2 bits (160), Expect = 1.240e-9
Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 1
Query:  247 GDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            GDTV+EALNAGID V S+ +YVL DNVENL L   ++IDGTGN L N+I GN+G
Sbjct: 1308 GDTVVEALNAGIDTVQSAQSYVLGDNVENLTLTGTDNIDGTGNELANIIIGNNG 1361          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: A0A2S6HGG1_9GAMM (VCBS repeat-containing protein n=1 Tax=Methylobacter tundripaludum TaxID=173365 RepID=A0A2S6HGG1_9GAMM)

HSP 1 Score: 65.9 bits (159), Expect = 1.710e-9
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 1
Query:  244 LGDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            +GD VIE LN G D V SSITY LTDNVENL L    +IDGTGNAL+N+I GN G
Sbjct: 2670 IGDLVIENLNEGTDLVQSSITYTLTDNVENLTLTGTANIDGTGNALDNIILGNGG 2724          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: A0A3C1YZ48_9BACT (Uncharacterized protein n=1 Tax=Nitrospira sp. TaxID=70125 RepID=A0A3C1YZ48_9BACT)

HSP 1 Score: 65.5 bits (158), Expect = 2.280e-9
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  247 GDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNS 405
            GDTV+EA+NAGID + SS+T+ L  NVENL LI    I+GTGNALNN++ GN+
Sbjct: 2028 GDTVVEAVNAGIDTIQSSVTHTLATNVENLTLIGTGAINGTGNALNNILVGNN 2080          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: A0A0M4DIT7_9DELT (CADG domain-containing protein n=1 Tax=Desulfuromonas soudanensis TaxID=1603606 RepID=A0A0M4DIT7_9DELT)

HSP 1 Score: 65.5 bits (158), Expect = 2.320e-9
Identity = 36/54 (66.67%), Postives = 40/54 (74.07%), Query Frame = 1
Query:  247 GDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            GDTV+EA   GID V SSIT  L+DNV+NL L    DIDGTGN LNNVI GN+G
Sbjct: 1282 GDTVVEAAGEGIDTVQSSITRTLSDNVDNLTLTGTEDIDGTGNELNNVIIGNTG 1335          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: UPI0002ABD0BE (calcium-binding protein n=1 Tax=Microcystis aeruginosa TaxID=1126 RepID=UPI0002ABD0BE)

HSP 1 Score: 65.1 bits (157), Expect = 3.060e-9
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1
Query:  250 DTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            D VIEALN G D V S++TYVL DNVENL+L     I+GTGNALNN I GNSG
Sbjct: 1467 DQVIEALNGGTDTVNSTLTYVLGDNVENLNLTGSGSINGTGNALNNTIVGNSG 1519          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: UPI001B81C5C9 (hypothetical protein n=1 Tax=Nitrospira defluvii TaxID=330214 RepID=UPI001B81C5C9)

HSP 1 Score: 64.3 bits (155), Expect = 5.740e-9
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query:  247 GDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNS 405
            GDTV+EA+NAGID V SS+T+ L  NVENL LI    I+GTGN LNN++ GN+
Sbjct: 2130 GDTVVEAVNAGIDTVQSSVTHTLATNVENLTLIGTGAINGTGNGLNNILVGNN 2182          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: UPI000563F50B (VCBS domain-containing protein n=2 Tax=Methylobacter tundripaludum TaxID=173365 RepID=UPI000563F50B)

HSP 1 Score: 64.3 bits (155), Expect = 5.850e-9
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  244 LGDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            + D V+E +NAG D V SS+TY+L+DNVENL L     ++GTGNAL+NVI GNSG
Sbjct: 3076 INDVVVEGVNAGTDSVQSSVTYMLSDNVENLTLTGTAAVNGTGNALDNVITGNSG 3130          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: A0A075KBP1_9FIRM (Hemolysin-type calcium binding domain protein n=1 Tax=Pelosinus sp. UFO1 TaxID=484770 RepID=A0A075KBP1_9FIRM)

HSP 1 Score: 63.2 bits (152), Expect = 1.460e-8
Identity = 35/51 (68.63%), Postives = 38/51 (74.51%), Query Frame = 1
Query:  247 GDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEG 399
            GD VIE LN GID V SS+TY L+DNVENL L  V +IDGTGN LNN I G
Sbjct: 2462 GDIVIENLNEGIDTVKSSVTYTLSDNVENLTLTGVAEIDGTGNELNNTILG 2512          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: B2IXX6_NOSP7 (Hemolysin-type calcium-binding region n=1 Tax=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) TaxID=63737 RepID=B2IXX6_NOSP7)

HSP 1 Score: 62.4 bits (150), Expect = 2.610e-8
Identity = 32/55 (58.18%), Postives = 42/55 (76.36%), Query Frame = 1
Query:  244 LGDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSG 408
            + D ++E L+AGID V SS+++VLTDNVENL L     IDGTGN LNN++ GN+G
Sbjct: 1178 VSDIIVEGLDAGIDLVKSSVSFVLTDNVENLTLTGTGAIDGTGNILNNILIGNTG 1232          
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Match: UPI00200F88DE (hypothetical protein n=1 Tax=unclassified Marinobacter TaxID=83889 RepID=UPI00200F88DE)

HSP 1 Score: 62.4 bits (150), Expect = 2.710e-8
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 1
Query:  244 LGDTVIEALNAGIDDVTSSITYVLTDNVENLDLITVNDIDGTGNALNNVIEGN 402
            +GD V E LN GID+V SSI+Y LTDNVENL L     IDGTGNAL+NVI  N
Sbjct: 1681 IGDVVTENLNEGIDNVQSSISYTLTDNVENLTLTGAAAIDGTGNALDNVITAN 1733          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99503.21598.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3C24151.240e-966.67hypothetical protein n=1 Tax=Pseudomonas fakonensi... [more]
A0A2S6HGG1_9GAMM1.710e-967.27VCBS repeat-containing protein n=1 Tax=Methylobact... [more]
A0A3C1YZ48_9BACT2.280e-962.26Uncharacterized protein n=1 Tax=Nitrospira sp. Tax... [more]
A0A0M4DIT7_9DELT2.320e-966.67CADG domain-containing protein n=1 Tax=Desulfuromo... [more]
UPI0002ABD0BE3.060e-967.92calcium-binding protein n=1 Tax=Microcystis aerugi... [more]
UPI001B81C5C95.740e-962.26hypothetical protein n=1 Tax=Nitrospira defluvii T... [more]
UPI000563F50B5.850e-960.00VCBS domain-containing protein n=2 Tax=Methylobact... [more]
A0A075KBP1_9FIRM1.460e-868.63Hemolysin-type calcium binding domain protein n=1 ... [more]
B2IXX6_NOSP72.610e-858.18Hemolysin-type calcium-binding region n=1 Tax=Nost... [more]
UPI00200F88DE2.710e-866.04hypothetical protein n=1 Tax=unclassified Marinoba... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99503contigEcto-sp13_S_contig99503:29..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score66.6
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog63737.Npun_F4679
Model size483
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Hemolysin-type calcium-binding repeat (2 copies)
EggNOG OGs1G1I0@1117,1HIHD@1161,COG2931@1,COG2931@2
Cds size483
COG Functional cat.Q
Best tax levelNostocales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.171382-CDS-Ecto-sp13_S_contig99503:28..5111681464255.171382-CDS-Ecto-sp13_S_contig99503:28..511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99503 29..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99503.21598.1prot_Ecto-sp13_S_contig99503.21598.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99503 29..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99503.21598.1

>prot_Ecto-sp13_S_contig99503.21598.1 ID=prot_Ecto-sp13_S_contig99503.21598.1|Name=mRNA_Ecto-sp13_S_contig99503.21598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
AATSGIGNDLDNEMTANDLGNTLEGGLGGDTLNGGAGNDSLDGGAGADSL
VGGDGDDTLRGGGGDDTMIGGEGNDSYVVGALGDTVIEALNAGIDDVTSS
ITYVLTDNVENLDLITVNDIDGTGNALNNVIEGNSGANLLSGLAGNDTLI
GEGGNDTPDGG
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mRNA from alignment at Ecto-sp13_S_contig99503:29..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99503.21598.1 ID=mRNA_Ecto-sp13_S_contig99503.21598.1|Name=mRNA_Ecto-sp13_S_contig99503.21598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99503:29..511+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCGACCTCCGGCATCGGCAACGATCTCGACAACGAGATGACAGCCAA CGACCTGGGCAACACCCTCGAGGGTGGCCTCGGTGGCGACACGCTGAACG GTGGTGCCGGCAACGACTCGCTTGATGGCGGTGCGGGTGCCGACTCCCTG GTCGGCGGTGACGGCGACGACACTCTGCGCGGAGGTGGCGGGGACGACAC CATGATCGGTGGCGAGGGCAACGACTCCTACGTCGTCGGTGCTCTCGGTG ATACGGTGATCGAGGCCCTCAACGCGGGTATCGACGACGTCACCAGCTCG ATCACCTACGTGCTGACCGACAACGTCGAGAACCTGGACCTGATTACCGT CAACGACATCGACGGGACGGGTAATGCCCTGAACAACGTGATCGAGGGTA ACAGCGGGGCCAACCTCCTCTCCGGCCTGGCGGGTAACGACACCCTGATT GGTGAAGGGGGTAACGACACCCCGGACGGCGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99503:29..511+

>mRNA_Ecto-sp13_S_contig99503.21598.1 ID=mRNA_Ecto-sp13_S_contig99503.21598.1|Name=mRNA_Ecto-sp13_S_contig99503.21598.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99503:29..511+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCGACCTCCGGCATCGGCAACGATCTCGACAACGAGATGACAGCCAA
CGACCTGGGCAACACCCTCGAGGGTGGCCTCGGTGGCGACACGCTGAACG
GTGGTGCCGGCAACGACTCGCTTGATGGCGGTGCGGGTGCCGACTCCCTG
GTCGGCGGTGACGGCGACGACACTCTGCGCGGAGGTGGCGGGGACGACAC
CATGATCGGTGGCGAGGGCAACGACTCCTACGTCGTCGGTGCTCTCGGTG
ATACGGTGATCGAGGCCCTCAACGCGGGTATCGACGACGTCACCAGCTCG
ATCACCTACGTGCTGACCGACAACGTCGAGAACCTGGACCTGATTACCGT
CAACGACATCGACGGGACGGGTAATGCCCTGAACAACGTGATCGAGGGTA
ACAGCGGGGCCAACCTCCTCTCCGGCCTGGCGGGTAACGACACCCTGATT
GGTGAAGGGGGTAACGACACCCCGGACGGCGGG
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