mRNA_Ecto-sp13_S_contig9946.21593.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9946.21593.1
Unique NamemRNA_Ecto-sp13_S_contig9946.21593.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9946.21593.1 vs. uniprot
Match: D7FWU2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU2_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 1.330e-14
Identity = 57/120 (47.50%), Postives = 62/120 (51.67%), Query Frame = 1 
Query:   37 KENIVEVKKTRADETQAGGEEPSEKGKKTVTTE-------------------------------------------ASSLPESAPSANRFASSTTEG--NAS*GGNRHAGCNFHALTNDF 261
            KE+IVEVKKTRA+ET AGGEEP E GKKT T E                                            SSLPESAPSA+  ASSTTEG  N+S GG+RHAGCNF AL   F
Sbjct:   14 KEDIVEVKKTRAEETLAGGEEPFENGKKTATAEPADSPSPILPKTSPSKEDGSASPTATSVDASALGAVTTTTPQEGSSLPESAPSADGSASSTTEGQGNSSRGGDRHAGCNFGALQQRF 133
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9946.21593.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWU2_ECTSI1.330e-1447.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9946contigEcto-sp13_S_contig9946:1892..2805 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size263
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001180.1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464254.8406696-CDS-Ecto-sp13_S_contig9946:1891..20231681464254.8406696-CDS-Ecto-sp13_S_contig9946:1891..2023Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9946 1892..2023 +
1681464254.8604407-CDS-Ecto-sp13_S_contig9946:2538..25781681464254.8604407-CDS-Ecto-sp13_S_contig9946:2538..2578Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9946 2539..2578 +
1681464254.874703-CDS-Ecto-sp13_S_contig9946:2716..27541681464254.874703-CDS-Ecto-sp13_S_contig9946:2716..2754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9946 2717..2754 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464254.8842041-UTR-Ecto-sp13_S_contig9946:2754..28051681464254.8842041-UTR-Ecto-sp13_S_contig9946:2754..2805Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9946 2755..2805 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9946.21593.1prot_Ecto-sp13_S_contig9946.21593.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9946 1892..2754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9946.21593.1

>prot_Ecto-sp13_S_contig9946.21593.1 ID=prot_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
DAEKCSPSDATEKENIVEVKKTRADETQAGGEEPSEKGKKTVTTEASSLP
ESAPSANRFASSTTEGNAS*
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mRNA from alignment at Ecto-sp13_S_contig9946:1892..2805+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9946.21593.1 ID=mRNA_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=914bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9946:1892..2805+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCTGAGAAATGCTCTCCTTCTGATGCGACCGAAAAGGAGAACATCGT
GGAGGTGAAGAAAACCAGAGCCGACGAAACGCAGGCCGGGGGTGAAGAAC
CGTCCGAAAAGGGAAAGAAGACCGTCACTACGGTGAGGTGTAAGGCCTAC
ATAGAACCACTGTCATTGCGTTGGTTTTTACCCACCGACTCAAAATTAGG
CACGAAGTCGCGCCCCGCTCTTGAGGCACAAAATGATGTCCGCGTTCGGG
TAGGCAGGTATCGAACTTTCTTATCTCCAGATGAATCTATGGTCATGTTC
GGACGACACTGTTGTATCAAACGTGGGGTACTTCGGGAGGAGGCAATCAG
TCTTTGATAGGGGACCTACGAGCCATTGGCGCTGAATCAAACGGAAGCTG
AAGGTGTAAGGCGGTGGCAACAAGAGTGTCATGACGCTCATCGCCGTCCT
CTCCACGGACGACTCTTATCGACCTATCGCCAACTTGAAAATATCGCTCA
TATACACTCCTCTTCCTACAGGAACCGGCCCACTTACAACGCGAATAATG
CCTAAAATATCACCATCCAAAGAGGATCGATCTGCGTCGCCCACTGCCAC
CTCTGTTGATGCCTCCGCCCTCCGCACCACCACCACTATCACCACAGGAG
GCGTCGAGTCTTCCGGAATCAGCCCCGTCGGCCAACCGTGAGGGGTGATC
CCCCTTTGCTCCTCTCCGGAAAGCCTGCCGCACCGCACGAAGGGCTCGTT
TCAACCGGAAGCCGTCTGCTCTGTGCTGCTGCTTCCACTTGTACTACTAC
GTCCGCTACTGTGTCGCTCTGGAAGGGTTTGCGTCGTCCACTACTGAAGG
AAACGCTAGCTGAGGTGGAAACCGTCACGCCGGCTGCAACTTCCACGCCC
TTACCAACGATTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9946:1892..2805+

>mRNA_Ecto-sp13_S_contig9946.21593.1 ID=mRNA_Ecto-sp13_S_contig9946.21593.1|Name=mRNA_Ecto-sp13_S_contig9946.21593.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9946:1892..2805+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGCTGAGAAATGCTCTCCTTCTGATGCGACCGAAAAGGAGAACATCGT
GGAGGTGAAGAAAACCAGAGCCGACGAAACGCAGGCCGGGGGTGAAGAAC
CGTCCGAAAAGGGAAAGAAGACCGTCACTACGGAGGCGTCGAGTCTTCCG
GAATCAGCCCCGTCGGCCAACCGGTTTGCGTCGTCCACTACTGAAGGAAA
CGCTAGCTGA
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