mRNA_Ecto-sp13_S_contig994.21587.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig994.21587.1
Unique NamemRNA_Ecto-sp13_S_contig994.21587.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig994.21587.1 vs. uniprot
Match: D7FZ51_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ51_ECTSI)

HSP 1 Score: 493 bits (1268), Expect = 9.880e-170
Identity = 363/445 (81.57%), Postives = 376/445 (84.49%), Query Frame = 1 
Query:    1 PDNWQEDTRFDGPEHWGMEEQWKSLFPKTGFETKSSGGSGDSSRDKDGGRTRAKRTSKATMDMMDMTAEGDDDTVTCSLQSGDDTDHFGNFQQPSRAARRTVPETAPEDPEEEMPLPSYRRPKAKTTATSSSSISTSFVGKAPFDEDEEPTTGQRRWRIHPRSTDPASSSRAGSRARDSVLLPSSSEEXXE--FDESEANITGHERNNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCSPXXXXXXSPYGDDSPSRQRHDEEIESSGSESCGGLSNSDFDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRTNGGGTK-GKGRVVREGGRRRKGSSSDSRMGNNTSLSPIPGSAQGARARSAPSGSKKARKVVRAQGNERGWIAKGGGSXXXXXXXGRARNPVLSFQGSQISMRKNNERSLTQSKINFPVLL 1326
            PDNWQEDTRFDGPEHWG+E++WKSLFPKTGF+TKS GG  D+SRDKDGGR+RAK T  AT+DM   TAEG DDTVTCSLQSGDD  HF NF QPSRAARRTVPETAPEDPEEEM +PSYRRP AKTTATS SSI+TS +GKAP  EDEEPTTGQRRWRI PRST+PASSSRAGSRARDSVLLPSSSE XX   FDESEANITGHERNNSR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CSP XXXX  PYGDDSPSRQR +EEIESSGSESCGGLSNSDFDG          XXXXXXXXXXXXXXXXXXXXXX           GKGRVVR            SRMGNNTS SPIPGSAQGARARSAPSGSKKARKVVRAQGNE GWIAKGGGSXXXXXX GR RNPVLSFQGSQISMRKNNERSLTQSKINFPV+L
Sbjct:    7 PDNWQEDTRFDGPEHWGIEKRWKSLFPKTGFKTKSVGGIVDTSRDKDGGRSRAKGTRNATVDM---TAEGGDDTVTCSLQSGDD--HFANFNQPSRAARRTVPETAPEDPEEEMRIPSYRRPNAKTTATSGSSINTSSIGKAPLYEDEEPTTGQRRWRIQPRSTEPASSSRAGSRARDSVLLPSSSEXXXXXXFDESEANITGHERNNSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCSPGXXXXAFPYGDDSPSRQRREEEIESSGSESCGGLSNSDFDGSEGEGRKPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKGRVVRXXXXXXXXXXXHSRMGNNTSSSPIPGSAQGARARSAPSGSKKARKVVRAQGNEHGWIAKGGGSXXXXXXGGRVRNPVLSFQGSQISMRKNNERSLTQSKINFPVVL 446
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig994.21587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZ51_ECTSI9.880e-17081.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig994contigEcto-sp13_S_contig994:3530..6141 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1326
Hectar predicted targeting categorymitochondrion
Exons2
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464254.339087-UTR-Ecto-sp13_S_contig994:3529..37831681464254.339087-UTR-Ecto-sp13_S_contig994:3529..3783Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig994 3530..3783 -
1681464254.371424-UTR-Ecto-sp13_S_contig994:5927..61411681464254.371424-UTR-Ecto-sp13_S_contig994:5927..6141Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig994 5928..6141 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464254.3502634-CDS-Ecto-sp13_S_contig994:3783..43291681464254.3502634-CDS-Ecto-sp13_S_contig994:3783..4329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig994 3784..4329 -
1681464254.3610194-CDS-Ecto-sp13_S_contig994:5615..59271681464254.3610194-CDS-Ecto-sp13_S_contig994:5615..5927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig994 5616..5927 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig994.21587.1prot_Ecto-sp13_S_contig994.21587.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig994 3784..5927 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig994.21587.1

>prot_Ecto-sp13_S_contig994.21587.1 ID=prot_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=286bp
MTLLHVACRAATIPIISATSSSQVVRLEGQFPRRRQRTPKRRCHFLLTGD
RKRKQRQLAAAASVQVLSVRHPSTRTRSRRRGKEGGESTREARTQHRAPV
LEAGLVIRCYCRLHPRKRRSSTKARPTSRATNGTTPVHPSPVPANTKTAG
APMNRPRTPSPETTIRRGKAVRALQGVGPQPPRMATTPPRGKDTTRRLSR
LDRNPAAACRTPTLTAARARVASHPHPPRGCRLVLFRAEGKGTGKGKERG
VPTGAEQKGKGVSFARVVGGERDRPATAGWATTRH*
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mRNA from alignment at Ecto-sp13_S_contig994:3530..6141-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig994.21587.1 ID=mRNA_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:3530..6141- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGACAATTGGCAAGAAGACACACGCTTCGACGGCCCAGAGCACTGGGG
CATGGAAGAACAGTGGAAGAGCTTATTCCCCAAGACTGGCTTCGAGACGA
AGAGCAGCGGTGGTAGTGGTGACAGTAGTAGGGACAAGGATGGCGGCAGG
ACTCGGGCAAAGAGGACAAGCAAGGCGACGATGGACATGATGGACATGAC
CGCCGAGGGAGACGATGACACTGTTACATGTAGCCTGCAGAGCGGCGACG
ATACCGATCATTTCGGCAACTTCCAGCAGCCAAGTCGTGCGGCTCGAAGG
ACAGTTCCCGAGACGGCGCCAGAGGACCCCGAAGAGGAGATGCCACTTCC
TTCTTACAGGAGACCGAAAGCGAAAACAACGGCAACTAGCAGCAGCAGCA
TCAGTACAAGTTTTGTCGGTAAGGCACCCTTCGACGAGGACGAGGAGCCG
ACGACGGGGCAAAGAAGGTGGAGAATCCACCCGAGAAGCACGGACCCAGC
ATCGAGCTCCCGTGCTGGAAGCAGGGGTGAGTCGAGAGACACGGGAAAGG
TATTCATAGCTTGGTGTGGTGATGCTTGCCATGGTTGTCATGCTTGTCTG
CTATGAACGGTGGAGCGGGTCAACGTACCGTCCCACGTGAAACATGATTC
CATAGTGGTACATGTCCATAGCATGGGATTCTCTCAAACGGCCTACTTTT
CGTACACCGAGGGGCGGAGGCAACTTTCGCGTTAGCGAAGGGGTGTCAAT
CAAGGCGAATTGGTTCGTTTCGCGGAGATTTCGGGATATTCATCGATGTT
TTACCACAACCTCCTCCTTGTGGTAATACACAGCTGTGCTCCCCACACAC
ACACAGCCAAGTAGACAACTGTGACATTTACCCGACGAGCAAGTGAACGG
CAACGATTGGCCTTGGGGCCTTGGTAAGGGTATTAGGTGGCGTTATGGAT
GGAGAGATTCCATGGCAAGCAACTCGCGGTACCACTCAGCCGATCGAGGC
GTTTGTACAAGAAGTGGGATTGCGCGTTTTATTCGATTGATTGGGTGTGT
CTGTTTTCGCAAGGGTCCCTCCATATGGAAGCATTGGAACACCCCTATGT
TACGTGTCTATCTTGGTCGCCGGGGGGGAGGGGGGGGGGGGAGGCTTTAG
GCGTCCCCGGGGGAGACATTTTGACATATTCCACGGGGTTTCGACATTTT
TCGGGCGCTTTTTTCAGCGCACTCGCGTCGGATCCCACACAGAGCTAGTG
GAAATTATGGAAACACCCCAAGAATGCGCGTAATTCTTGGTCGCGACGAG
GGGGTCTAGTGCATGGTGTAGAAAATAGTAAAACGACACGAAAGCCTAGA
ATTTTATGGGTTGTAGAACGCGGCACGAAAGTCTGATCAATGAAGAGAGT
GTGATATGGACACACTAACTACTTTACGAGAGACTGCTGCAAGTGAGCAG
CCTAAATGTGGCTATCCTGCGTGTCAATCTTGGCCCGGGGGAGGTGGGGG
GGGGTAGGGTGTTCCACGGTTTCCACATGGAGGGACCCTTGGTTTTCGGA
CCCTCTTCTTTCATCACTGCACTCTCGGTACGGAAATGTGGAAACGTGGG
TGCCCGGTGCGTCAACCAACATTATCCTTTCCATGAAAGCTTCACGGCAA
TGCCTGCCCACGACCACAATTTTTCGAGGTTGATATTTTTTCCCCCCTCG
CCTGCTTCCTCGCACATGTCTCCCTGTGAAACACAACCTCTCCTGCGTTT
TCTTATTTTTTCTCCTTACCCCCGCGACATTTTCGCCGGATCCAAAACCC
GCCTTTGCGAAGCTCGTGATTCGGTGCTACTGCCGTCTTCATCCGAGGAA
GAGGAGGAGTTCGACGAAAGCGAGGCCAACATCACGGGCCACGAACGGAA
CAACTCCCGTTCACCCATCCCCCGTCCCCGCGAACACAAAAACGGCGGGG
GCGCCGATGAATCGCCCCCGCACCCCCTCCCCCGAAACAACGATAAGAAG
GGGAAAGGCAGTACGTGCTCTCCAGGGGGTGGGGCCGCAGCCTCCCCGTA
TGGCGACGACTCCCCCTCGAGGCAAAGACACGACGAGGAGATTGAGTCGT
CTGGATCGGAATCCTGCGGCGGCTTGTCGAACTCCGACTTTGACGGCAGC
GAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCCCGCGGCTGTCGTCTTG
TTCTCTTTCGCGCCGAAGGGAAGGGGACGGGAAAGGGGAAGGAACGCGGC
GTACCAACGGGGGCGGAACAAAAGGGAAAGGGCGTGTCGTTCGCGAGGGT
GGTCGGAGGCGAAAGGGATCGTCCAGCGACAGCAGGATGGGCAACAACAC
GTCATTGAGCCCGATCCCGGGTTCCGCGCAAGGGGCGCGGGCTCGCTCGG
CACCATCTGGCAGCAAGAAGGCTCGCAAGGTTGTGAGAGCCCAAGGGAAC
GAGCGAGGCTGGATAGCCAAGGGTGGTGGGAGCGGCGGTGGCGGTAGCAG
TGGAGGGCGAGCGAGAAACCCGGTGCTTTCGTTTCAGGGTTCTCAGATTT
CGATGCGAAAGAACAACGAAAGAAGCCTAACGCAGTCCAAAATCAACTTT
CCCGTCCTATTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig994:3530..6141-

>mRNA_Ecto-sp13_S_contig994.21587.1 ID=mRNA_Ecto-sp13_S_contig994.21587.1|Name=mRNA_Ecto-sp13_S_contig994.21587.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig994:3530..6141- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACACTGTTACATGTAGCCTGCAGAGCGGCGACGATACCGATCATTTC
GGCAACTTCCAGCAGCCAAGTCGTGCGGCTCGAAGGACAGTTCCCGAGAC
GGCGCCAGAGGACCCCGAAGAGGAGATGCCACTTCCTTCTTACAGGAGAC
CGAAAGCGAAAACAACGGCAACTAGCAGCAGCAGCATCAGTACAAGTTTT
GTCGGTAAGGCACCCTTCGACGAGGACGAGGAGCCGACGACGGGGCAAAG
AAGGTGGAGAATCCACCCGAGAAGCACGGACCCAGCATCGAGCTCCCGTG
CTGGAAGCAGGGCTCGTGATTCGGTGCTACTGCCGTCTTCATCCGAGGAA
GAGGAGGAGTTCGACGAAAGCGAGGCCAACATCACGGGCCACGAACGGAA
CAACTCCCGTTCACCCATCCCCCGTCCCCGCGAACACAAAAACGGCGGGG
GCGCCGATGAATCGCCCCCGCACCCCCTCCCCCGAAACAACGATAAGAAG
GGGAAAGGCAGTACGTGCTCTCCAGGGGGTGGGGCCGCAGCCTCCCCGTA
TGGCGACGACTCCCCCTCGAGGCAAAGACACGACGAGGAGATTGAGTCGT
CTGGATCGGAATCCTGCGGCGGCTTGTCGAACTCCGACTTTGACGGCAGC
GAGGGCGAGGGTCGCAAGCCATCCTCATCCTCCCCGCGGCTGTCGTCTTG
TTCTCTTTCGCGCCGAAGGGAAGGGGACGGGAAAGGGGAAGGAACGCGGC
GTACCAACGGGGGCGGAACAAAAGGGAAAGGGCGTGTCGTTCGCGAGGGT
GGTCGGAGGCGAAAGGGATCGTCCAGCGACAGCAGGATGGGCAACAACAC
GTCATTGA
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