mRNA_Ecto-sp13_S_contig1261.2157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A6H5JR22_9PHAE (Lipoyl-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR22_9PHAE) HSP 1 Score: 278 bits (712), Expect = 4.260e-90 Identity = 150/187 (80.21%), Postives = 152/187 (81.28%), Query Frame = 1
Query: 10 AAGRICGAASVAASRQCRLRRKVISAATAAMSPRTAVGSRFVRHASSATTLPDDDVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSPGVDCYGGAGEGLRRATYQGYLNHKTPAE 570
AAGR CGAASVA +R CRLRRKVISAA VLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYA GDAPVEGGTVDM+VELAECGFVGKLFVAEGDTVEVGQAVMAMCEE ENVRALSG TSPGVDCYGGAGEGLR ATYQGYLNHKTPAE
Sbjct: 3 AAGRFCGAASVAVNRHCRLRRKVISAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYALGDAPVEGGTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEVENVRALSGVTSPGVDCYGGAGEGLRIATYQGYLNHKTPAE 189
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: D7FRP6_ECTSI (Pyruvate dehydrogenase E1 component subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRP6_ECTSI) HSP 1 Score: 238 bits (608), Expect = 2.510e-75 Identity = 118/124 (95.16%), Postives = 119/124 (95.97%), Query Frame = 1
Query: 190 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSPGVDCYGGAGEGLRRATYQGYLNHKT 561
MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEG TVDM+VELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSP VDCY GAGEG R ATYQGYLNHKT
Sbjct: 1 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGSTVDMVVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSPSVDCYSGAGEGFRIATYQGYLNHKT 124
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A836CE97_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE97_9STRA) HSP 1 Score: 107 bits (266), Expect = 5.030e-24 Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 1
Query: 133 VRHASSATTLPDDDVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPG-DAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGAT 480
+R +S+A +P D L+LPMP+LSPSM T+ KWL + GDE EY+A L + TD+L A G P G+ M+VEL E GF+ KL EG+TV VG+ + +CEEE++V AL T
Sbjct: 21 LRASSTAKGMPHD-TLWLPMPRLSPSMKTGTIKKWLLSPGDEFGEYEAALTIDTDTLVAEGLKTPESSGSTSMVVELLEAGFMAKLLRKEGETVRVGEPIALLCEEEDSVSALQSDT 136
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A8J9WR07_9CHLO (Probable dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WR07_9CHLO) HSP 1 Score: 79.7 bits (195), Expect = 8.120e-14 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 172 DVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSL----YAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSP 486
+V+ +PMPKLSPSMT T+++WLKA GDEI EYD I+E+ T L Y G G+V ++VE E G + V +G V+VG V M E+ +++ L G P
Sbjct: 7 NVIVVPMPKLSPSMTEGTISRWLKAPGDEIVEYDIIMEVDTQELTEAAYKVGKF---AGSVTLLVEAQEDGIMHSHLVPQGKQVKVGTPVALMAEQGQSLPDLDGYKPP 112
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A7S0IYL7_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IYL7_9EUKA) HSP 1 Score: 73.6 bits (179), Expect = 5.350e-12 Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 1
Query: 106 PRTAVGSRFVRHASSATTLPDDDVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENV 459
PRT S+ +RH S + +PMP+LSPSM+R + +W + GD+I+ YD + ++STD L +P T + VE E G++ K+ VAEG + +CE EE+V
Sbjct: 11 PRTMPFSQQIRHFPSGCAHANVSYKLMPMPRLSPSMSRGVLERWHLSAGDQISTYDLVCDVSTDELLDEPSSP----TFVLEVESHEDGWLAKVLVAEGGAAAPDMPIAVICENEEDV 124
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A7S0YW53_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YW53_9CRYP) HSP 1 Score: 67.4 bits (163), Expect = 4.160e-10 Identity = 41/124 (33.06%), Postives = 64/124 (51.61%), Query Frame = 1
Query: 184 LPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSG-ATSPGVDCYGGAGE-GLRRATYQGYL 549
+PMPKL+P M A ++KWL EGDE++ D + EL + L E M++E E GFV +L AEG V + ++ +C++E + +G G G+G+ G R +Q Y+
Sbjct: 1 MPMPKLTPQMESAVLSKWLIKEGDEVSAGDLVCELEVEGLNP------ELPHATMLIETHEAGFVARLLEAEGSRVAADRGILVLCDDEASKDQFAGYERKDGPSPNSGSGDSGARVFCWQAYV 118
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A7S0L0Q4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L0Q4_9EUKA) HSP 1 Score: 64.7 bits (156), Expect = 2.270e-9 Identity = 41/95 (43.16%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 124 SRFVRHASSATTLPDDDVLYLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDT 408
SR AS A+ LP ++ PMP+LSPSMTR + KWL A GD ++ YD + ++STD L D P + GT + +E E G++ K +AEGD+
Sbjct: 19 SRCSSSASRASFLPPHKLM--PMPRLSPSMTRGVLDKWLVAAGDAVSTYDLLCDVSTDELL---DEP-KSGTHVLEMESHEDGWLAKGLLAEGDS 107
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A2E3SNU1_9BACT (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A2E3SNU1_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 1.010e-8 Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query: 190 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRALSGATSP 486
MPKL S+ AT+TKWLK+EGD+I E DAI+E++TD + + +PVEG V K +EGD VEVG+ V+A E E A SP
Sbjct: 8 MPKLGESIIEATITKWLKSEGDQIEEDDAIVEIATDKVDSEIPSPVEGKLV-------------KALFSEGDVVEVGK-VIAYIEVEGMETAEESQESP 92
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: UPI001557D946 (2-oxo acid dehydrogenase subunit E2 n=2 Tax=unclassified Lentimicrobium TaxID=2677434 RepID=UPI001557D946) HSP 1 Score: 67.8 bits (164), Expect = 1.040e-8 Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = 1
Query: 190 MPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQ--AVMAMCEEEEN 456
MPKL S+ AT+TKWLK EGD ++E DAILE++TD + + +PVEG + + E EGD + VG+ A++AM +EE+
Sbjct: 8 MPKLGESIIEATITKWLKVEGDSVDEDDAILEIATDKVDSEIPSPVEGKIIKTLYE-------------EGDVIAVGEVIAIIAMDGDEED 85
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Match: A0A7C0VZ72_9BACT (Dihydrolipoyllysine-residue acetyltransferase (Fragment) n=1 Tax=Candidatus Atribacteria bacterium TaxID=2053509 RepID=A0A7C0VZ72_9BACT) HSP 1 Score: 63.5 bits (153), Expect = 1.190e-8 Identity = 34/96 (35.42%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 181 YLPMPKLSPSMTRATVTKWLKAEGDEINEYDAILELSTDSLYAPGDAPVEGGTVDMIVELAECGFVGKLFVAEGDTVEVGQAVMAMCEEEENVRAL 468
Y+ MPKL +M + TV +WLK EGD I E + +LE+ TD P +AP G + K+ V EG+T+ V + + EE+E+++ L
Sbjct: 4 YIIMPKLGFNMDQGTVVRWLKKEGDAIEEREEVLEIETDKTVMPVEAPCSG-------------ILRKILVEEGETIAVTLPIGIIAEEKEDIQPL 86 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1261.2157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1261.2157.1 >prot_Ecto-sp13_S_contig1261.2157.1 ID=prot_Ecto-sp13_S_contig1261.2157.1|Name=mRNA_Ecto-sp13_S_contig1261.2157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=191bp MNAAAGRICGAASVAASRQCRLRRKVISAATAAMSPRTAVGSRFVRHASSback to top mRNA from alignment at Ecto-sp13_S_contig1261:7585..10051+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1261.2157.1 ID=mRNA_Ecto-sp13_S_contig1261.2157.1|Name=mRNA_Ecto-sp13_S_contig1261.2157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1261:7585..10051+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1261:7585..10051+ >mRNA_Ecto-sp13_S_contig1261.2157.1 ID=mRNA_Ecto-sp13_S_contig1261.2157.1|Name=mRNA_Ecto-sp13_S_contig1261.2157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=573bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1261:7585..10051+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |