mRNA_Ecto-sp13_S_contig9919.21564.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D8LHL8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHL8_ECTSI) HSP 1 Score: 209 bits (533), Expect = 4.740e-58 Identity = 122/176 (69.32%), Postives = 136/176 (77.27%), Query Frame = 3
Query: 132 FFLLNRINELRRDGAIKHQQERVHQAARG*QAMTPAENTQFVSATRIGISGMEIS*FLAEPGELKVVAIDTGAGLVRLIPDDGGVVIATVQPHAMVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
FF+L RIN+LR DGAIKH QERV QAAR +AMT AE QFVSATRI IS M++S FLAEP ELKVVAIDT AGL RL +DGGVV+ TV+P VQQ ENLLIY STK++RIAGS F+E ME D S L MAL V + KASPGTV+FG LG+L KVATVFED SIQA NTEI
Sbjct: 297 FFMLKRINQLREDGAIKHYQERVDQAAREWRAMTSAEKAQFVSATRIEISCMKMSCFLAEPRELKVVAIDTDAGLFRLNHEDGGVVVITVKPGITVQQYENLLIYQSTKEVRIAGSGFEENME---DPSLLPMALLVSSVKASPGTVDFGLLGLLPIGKVATVFEDASIQARNTEI 469
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A6H5JNN1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNN1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 1.920e-43 Identity = 106/184 (57.61%), Postives = 114/184 (61.96%), Query Frame = 3
Query: 249 QFVSATRIGISGMEIS*FLAEPGELKVVAIDTGAGLVRLIPDDGGVVIATVQPHAMVQQDENLLIYHSTKQMRIAGS------------RFKEGMEAS-----------------------------------QDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
QFVSATRI IS ME+S FLAEPGELKVVAIDTGAG VRL P+DGGVVIATV+PH +QQDENLLIY STKQ+RIAGS + M S Q S L MAL V + KASPGTV+FGWLGVLNGRKVA VFEDPSIQA NTEI
Sbjct: 136 QFVSATRIEISCMEMSCFLAEPGELKVVAIDTGAGSVRLNPEDGGVVIATVKPHIKLQQDENLLIYQSTKQIRIAGSGAARLLPNGRYTTLQFFMSPSSIPPTVFGLTIDQCVTPHQLVKVSLNLPQPLSVLPQGPSFLPMALLVSSVKASPGTVDFGWLGVLNGRKVAIVFEDPSIQARNTEI 319
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A6H5JWP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWP2_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 8.480e-19 Identity = 57/113 (50.44%), Postives = 74/113 (65.49%), Query Frame = 3
Query: 324 KVVAIDTGAGLVRLIPDDGG-VVIATVQPHAMVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
+VVAIDTGAGLV+L P+ GG VV+AT +P V+QDE+LL+Y STKQ+RI GS F++ E S+ + G L+GRKVATVFEDP++QAS+TEI
Sbjct: 8 EVVAIDTGAGLVQLNPEQGGGVVVATAKPEINVEQDEDLLVYQSTKQIRIGGSGFEDVTEPSRRR-----------------RLGQGGFSTLHGRKVATVFEDPTVQASDTEI 103
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D8LG95_ECTSI (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG95_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 2.390e-12 Identity = 59/155 (38.06%), Postives = 78/155 (50.32%), Query Frame = 3
Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF---------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
EPG LK+VAI+TG G + L DDGG+VIA VQ H + VQ E+L +Y S+K +I+GS F EG + ++ S+L AL +L A + G V G G KVATVFEDPS++AS+ EI
Sbjct: 182 EPGPLKIVAINTGGGRLSLNSDDGGIVIAEVQADLDHHGVTVQGHESLDLYQSSKSFQISGSGFVDGTKVRFANALRGGGTNFTITDSQPELLTLELAEGSKWRKNPSALPGALVLLAADSGDGWVPLGPTQAKAGSKVATVFEDPSVEASDVEI 336
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D7FRJ9_ECTSI (Trypsin domain protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRJ9_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 8.790e-10 Identity = 56/154 (36.36%), Postives = 72/154 (46.75%), Query Frame = 3
Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF--------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
EPG LK+VAIDTGAG + L D GGV IA +Q H++ V+ E + +Y S+K + IAG F +EG + QD S L +L A A G V G GRKVAT+FEDP ++ S EI
Sbjct: 131 EPGPLKLVAIDTGAGRLLLREDLGGVTIAEMQADMKGHSLSVETHEEVTMYQSSKVLTIAGQGFNSSYTRFRFANSLVEGKNFTQVVTPESATFALEEGSKWRQDAPSWPAPLVLLAADAGDGFVPLGATTAKAGRKVATIFEDPRLEPSLQEI 284
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: D7FRK3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK3_ECTSI) HSP 1 Score: 67.8 bits (164), Expect = 3.520e-9 Identity = 54/154 (35.06%), Postives = 72/154 (46.75%), Query Frame = 3
Query: 309 EPGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGSRF--------------------------------KEGMEASQDTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
EPG LK+VAIDTGAG + L D GGV IA +Q H++ V+ E + +Y S+K + IAG F +EG + QD + L +L A A G V G GRKVAT++EDP ++ S EI
Sbjct: 131 EPGALKLVAIDTGAGRLLLREDLGGVTIAEMQADLNRHSLSVETHEEVTMYQSSKVLTIAGQGFNTGNTRFRFGNGLLEGKNFTQIVTPESATFTLEEGSKWRQDAPAWPAPLILLAADAGDGFVPLGATIAKTGRKVATIYEDPRLEPSLQEI 284
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Match: A0A835YLV2_9STRA (Peptidase S1 and S6, chymotrypsin/Hap n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLV2_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 4.110e-8 Identity = 62/179 (34.64%), Postives = 81/179 (45.25%), Query Frame = 3
Query: 243 NTQFVSATRIGISGMEIS*FLAE-PGELKVVAIDTGAGLVRLIPDDGGVVIATVQP----HAM-VQQDENLLIYHSTKQMRIAGS---------RFKEGMEASQ-------------------------DTSSLSMALWVLNAKASPGTVEFGWLGVLNGRKVATVFEDPSIQASNTEI 659
+TQ VS T+I + + +E PG LK+VAIDTG G + L PD G +IA VQ H + V+ IY ST + I G RF G+ + +L AL +L A A G V G V +GRKVATV+EDPS++AS EI
Sbjct: 163 STQVVSPTQILLVKRYGKMWRSEGPGPLKLVAIDTGGGRLPLDPDTKGRIIAEVQADREGHGVTVETHVEKHIYQSTPTLEIDGVGFNPDGTQLRFANGLRGGGANYTASTVTPTRMTLDLAPGSKWRGNVDNLPGALVLLAADAGAGFVALGATAVKSGRKVATVYEDPSVKASEVEI 341 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9919.21564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9919.21564.1 >prot_Ecto-sp13_S_contig9919.21564.1 ID=prot_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp MVQQDENLLIYHSTKQMRIAGSRFKEGMEASQDTSSLSMALWVLNAKASPback to top mRNA from alignment at Ecto-sp13_S_contig9919:189..5468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9919.21564.1 ID=mRNA_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9919:189..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9919:189..5468+ >mRNA_Ecto-sp13_S_contig9919.21564.1 ID=mRNA_Ecto-sp13_S_contig9919.21564.1|Name=mRNA_Ecto-sp13_S_contig9919.21564.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9919:189..5468+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |