prot_Ecto-sp13_S_contig99174.21563.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig99174.21563.1
Unique Nameprot_Ecto-sp13_S_contig99174.21563.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99174.21563.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 9.850e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 0 
Query:    1 MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLAGSVAAGGFLVLMV 48
            MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLA SVAAGGFLVLMV
Sbjct:   25 MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLADSVAAGGFLVLMV 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99174.21563.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KET6_9PHAE9.850e-2197.92UV excision repair protein RAD23 n=2 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.20.90coord: 1..48
e-value: 4.3E-8
score: 34.7
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 1..48
score: 8.72
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 2..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99174contigEcto-sp13_S_contig99174:34..177 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99174.21563.1mRNA_Ecto-sp13_S_contig99174.21563.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig99174 34..177 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig99174.21563.1 ID=prot_Ecto-sp13_S_contig99174.21563.1|Name=mRNA_Ecto-sp13_S_contig99174.21563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLAGSVAAGGFLVLMV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-like_domsf