mRNA_Ecto-sp13_S_contig99174.21563.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99174.21563.1
Unique NamemRNA_Ecto-sp13_S_contig99174.21563.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig99174.21563.1 vs. uniprot
Match: A0A6H5KET6_9PHAE (UV excision repair protein RAD23 n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KET6_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 9.850e-21
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLAGSVAAGGFLVLMV 144
            MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLA SVAAGGFLVLMV
Sbjct:   25 MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLADSVAAGGFLVLMV 72
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99174.21563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KET6_9PHAE9.850e-2197.92UV excision repair protein RAD23 n=2 Tax=Ectocarpu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99174contigEcto-sp13_S_contig99174:34..177 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D8LSP6
Preferred nameRad23
Model size144
KEGG koko:K10839,ko:K18180,ko:K20102
KEGG Pathwayko03420,ko04141,ko04714,map03420,map04141,map04714
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000746,GO:0000747,GO:0000753,GO:0000767,GO:0000902,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006605,GO:0006612,GO:0006620,GO:0006810,GO:0006886,GO:0006950,GO:0006996,GO:0007029,GO:0008104,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009653,GO:0009987,GO:0010256,GO:0010494,GO:0015031,GO:0015833,GO:0016043,GO:0019953,GO:0022414,GO:0031593,GO:0032182,GO:0032502,GO:0032989,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035770,GO:0036464,GO:0042886,GO:0043130,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0044703,GO:0044764,GO:0044877,GO:0045047,GO:0045048,GO:0045184,GO:0046907,GO:0048856,GO:0048869,GO:0050896,GO:0051179,GO:0051205,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0061024,GO:0070628,GO:0070727,GO:0070972,GO:0071702,GO:0071705,GO:0071840,GO:0072379,GO:0072380,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0140030,GO:1990904
Exons1
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0011@2759
Cds size144
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko03051,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.5996306-CDS-Ecto-sp13_S_contig99174:33..1771681464252.5996306-CDS-Ecto-sp13_S_contig99174:33..177Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99174 34..177 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99174.21563.1prot_Ecto-sp13_S_contig99174.21563.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99174 34..177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99174.21563.1

>prot_Ecto-sp13_S_contig99174.21563.1 ID=prot_Ecto-sp13_S_contig99174.21563.1|Name=mRNA_Ecto-sp13_S_contig99174.21563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MSDVKAKIAEVRGHDPATQVLICGGKTLKDGDSLAGSVAAGGFLVLMV
back to top

mRNA from alignment at Ecto-sp13_S_contig99174:34..177+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99174.21563.1 ID=mRNA_Ecto-sp13_S_contig99174.21563.1|Name=mRNA_Ecto-sp13_S_contig99174.21563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99174:34..177+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGATGTTAAGGCCAAGATTGCGGAGGTGCGAGGGCACGACCCTGC
CACCCAGGTACTCATCTGCGGCGGTAAGACCTTGAAAGACGGCGACTCTC
TCGCGGGCAGCGTCGCGGCCGGCGGGTTCCTGGTGCTGATGGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99174:34..177+

>mRNA_Ecto-sp13_S_contig99174.21563.1 ID=mRNA_Ecto-sp13_S_contig99174.21563.1|Name=mRNA_Ecto-sp13_S_contig99174.21563.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99174:34..177+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCGATGTTAAGGCCAAGATTGCGGAGGTGCGAGGGCACGACCCTGC
CACCCAGGTACTCATCTGCGGCGGTAAGACCTTGAAAGACGGCGACTCTC
TCGCGGGCAGCGTCGCGGCCGGCGGGTTCCTGGTGCTGATGGTC
back to top