prot_Ecto-sp13_S_contig9915.21561.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9915.21561.1
Unique Nameprot_Ecto-sp13_S_contig9915.21561.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length336
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 479 bits (1234), Expect = 2.060e-161
Identity = 273/336 (81.25%), Postives = 277/336 (82.44%), Query Frame = 0 
Query:    1 MGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERLMVEVSSGVGSAADVQ-AQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIADLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDGDAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAXXXXXXXXXXXXXXXXEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV 335
            MGTA AAAEG+TSSDGARVPGACGKAAYWLA+ GGWVQLERLCAEVSERLMVEV SGVGSAADVQ AQQVVLAEADGVLAAVPPGVNGPEL FLGRYKEIADLLSAEAA QPPPPHASG G+SSPAA GPGARLAGALAVDMLAPRGSCDGDA VAG                           A  D                   EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGS VEQVSEIRRALAGCLGAAMMAQN AEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEAL+DPRVAV
Sbjct:  510 MGTAVAAAEGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPRGSCDGDAPVAG---------------------------AGADEGE----------------EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSGVEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALVDPRVAV 802
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI2.060e-16181.25Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9915contigEcto-sp13_S_contig9915:1435..3255 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9915.21561.1mRNA_Ecto-sp13_S_contig9915.21561.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9915 1181..4190 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9915.21561.1 ID=prot_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
MGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERL
MVEVSSGVGSAADVQAQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIA
DLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDG
DAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAAAATAGGSAA
GAGEGEEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGC
GGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAP
EAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV*
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