Homology
BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI) HSP 1 Score: 616 bits (1588), Expect = 1.770e-208 Identity = 345/420 (82.14%), Postives = 351/420 (83.57%), Query Frame = 3 Query: 3 WELAATYLSGRSGRDGDGGGGNDVDDEAGLLRELALGVVPESERATHELVEWCRSRGLGEEVEAAVCRARGTTWIGKTGLSAVAMGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERLMVEVSSGVGSAADVQ-AQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIADLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDGDAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAXXXXXXXXXXXXXXXXEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV 1259
WELAATYLSG S RDG G+D DDEAGLLRELALGVVPESERATHELVEWCR+RGLGEEVEAAVCRARG WI KTGLSAVAMGTA AAAEG+TSSDGARVPGACGKAAYWLA+ GGWVQLERLCAEVSERLMVEV SGVGSAADVQ AQQVVLAEADGVLAAVPPGVNGPEL FLGRYKEIADLLSAEAA QPPPPHASG G+SSPAA GPGARLAGALAVDMLAPRGSCDGDA VAG A D EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGS VEQVSEIRRALAGCLGAAMMAQN AEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEAL+DPRVAV
Sbjct: 430 WELAATYLSGGSSRDG----GDDEDDEAGLLRELALGVVPESERATHELVEWCRARGLGEEVEAAVCRARGAAWIAKTGLSAVAMGTAVAAAEGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPRGSCDGDAPVAG---------------------------AGADEGE----------------EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSGVEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALVDPRVAV 802
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match Name | E-value | Identity | Description | |
D8LCE2_ECTSI | 1.770e-208 | 82.14 | Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... | [more] |
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Stop | 1 |
Start | 1 |
Model size | 2197 |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Cds size | 1008 |
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464252.4738054-UTR-Ecto-sp13_S_contig9915:1180..1434 | 1681464252.4738054-UTR-Ecto-sp13_S_contig9915:1180..1434 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9915 1181..1434 + |
1681464252.5235965-UTR-Ecto-sp13_S_contig9915:3255..4190 | 1681464252.5235965-UTR-Ecto-sp13_S_contig9915:3255..4190 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig9915 3256..4190 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464252.485414-CDS-Ecto-sp13_S_contig9915:1434..1629 | 1681464252.485414-CDS-Ecto-sp13_S_contig9915:1434..1629 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9915 1435..1629 + |
1681464252.5005076-CDS-Ecto-sp13_S_contig9915:2442..3255 | 1681464252.5005076-CDS-Ecto-sp13_S_contig9915:2442..3255 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9915 2443..3255 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9915.21561.1 >prot_Ecto-sp13_S_contig9915.21561.1 ID=prot_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
MGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERL MVEVSSGVGSAADVQAQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIA DLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDG DAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAAAATAGGSAA GAGEGEEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGC GGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAP EAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV* back to topmRNA from alignment at Ecto-sp13_S_contig9915:1181..4190+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9915.21561.1 ID=mRNA_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9915:1181..4190+ (Ectocarpus species13 EcNAP12_S_4_19m) GCTGGGAGCTCGCGGCGACGTACTTGAGCGGCAGGAGCGGCCGCGACGGC
GACGGCGGCGGCGGCAACGACGTCGACGACGAGGCCGGGCTTCTCCGAGA
GCTCGCGCTGGGGGTCGTGCCGGAGTCGGAGAGAGCGACCCACGAGCTCG
TGGAGTGGTGCCGATCTCGAGGCCTGGGGGAGGAGGTGGAGGCGGCCGTG
TGCCGCGCGAGGGGGACCACGTGGATAGGAAAGACGGGGTTGTCGGCGGT
GGCTATGGGCACGGCTGCGGCGGCGGCGGAGGGGAAAACGAGCAGCGACG
GCGCACGAGTACCGGGGGCGTGCGGGAAGGCGGCGTACTGGCTGGCGAGG
AGCGGCGGGTGGGTCCAGCTCGAGAGGCTCTGCGCGGAGGTGTCGGAGCG
GCTGATGGTGGAGGTCTCTTCGGGGGTCGGCAGCGCTGCCGACGTTCAGG
TGGGGGCACGCATTTTGGACCAATGGGAGTTGGAAGTTGGCTGGTAGCTT
GAGAGGTAATTTGCGTTTGGAGAGTGCGTTCGTTGCGTGGCAAGAGAGGC
ACAAGGGAGGGGAGTCATGGCGAGAACTGGGTTGAAAGTGGATCGCCAGC
ACTCGGACCTGGCGTGTCCAAGCTTCGCAAACATCGGTGCTCATGCTGCA
CTTCTATTTTTGATCGAACTTTGTGCGCATCTAATGATGTTGTATCGGTG
TTGTGTTCTTGAAGCGGTGGCTGCCTCTACCGATGTCTACAATTGTTTCG
TGGCCTGAACGGATTGCCTTTCTTCCCCAAATCCACAAATATGAGTCTAG
ATTCTGGAGATTTATCGAGAATTTGACGTCGACGGATGCGCGTGCCTCAT
GAGACGTGCCACGCGCAACCGCGGAGCGTGCTCACCCGGACCGGCGGAAA
GTGTTGTATTCTTGGTCCCTCGACAAGACAATCGTGTGTCCCTCACCATC
ACCAACGGTTCTACCTATATTTCGTGCGCGCCGCAATTCTCCGAGACGCT
CCCCTCCATGGTTTTCTCGGCAACTACAAGCTATTTTTTTTATCAGATGA
ACGCAACGCACTAGCCTTTACCTGAAAAACTATTGCTGTTTTGTGTTTGC
TTCCCCCACGCTCCTCTCCTTGGTTTTCTTCGCAACATCAAACTAGTTAT
TTCAGCAGATGAACGCAACGCACATCAGCCTAAGCTACTGCTGCCTCTGT
GTCTTCTATCCCCTGCGACTACGATTTTCGCTGCTGGTCTTGATCCCTTT
CCGGAACGGCAGGCTCAGCAGGTCGTTCTCGCTGAAGCGGACGGTGTTCT
CGCCGCGGTTCCTCCGGGCGTGAACGGGCCGGAGCTTTTTTTCCTCGGAC
GCTACAAAGAAATCGCGGATCTCCTCTCGGCCGAGGCGGCGGCGCAACCA
CCACCCCCGCATGCCTCGGGCACCGGGAATAGCTCGCCGGCCGCGGCGGG
TCCCGGGGCCCGCCTGGCCGGCGCCCTCGCGGTGGACATGCTTGCCCCCC
GTGGCAGCTGCGACGGCGATGCCGCGGTCGCCGGAGGTAGTGAGGCCCTT
TCGACCCCGACGCCACCGCCCAGGACATGGGCCCACCTGCTTAGGCTGTC
CGTCCCCGCGCTCAAAGCGGCGACTGACACTGCTGCTGCTGCTGCTACTG
CGGGGGGGTCGGCAGCGGGTGCTGGCGAGGGAGAAGAAGCATCTGCTGGC
GTGACCGTGGCGCAGGTGCACGCCCTGCTGGCCAAGCTGCAGGCCCTAGT
GGCGAGCGAGCACCGCGTGGGGAGCGTGCGCGGGGTGTGGAACCGTTCCA
GAGGGGGTCCTGGCTGTGGTGGCGGCACCTTGGCTACTGCGCCCGCGCCG
TACGGGTTTTGCAGCGGTGGTGGGAGCAGTGTGGAGCAAGTGTCGGAGAT
TCGTCGGGCGTTGGCCGGCTGTTTGGGCGCCGCCATGATGGCTCAGAATA
CGGCGGAGGCTGCGCCTGAAGCTGTCGGGAGTGGCAGGCGGCGGGGTGGT
CGGGGAGACTTTACGTTGTTGGGGACTAGGAGATTACCCGCGGAAGCGCT
GATAGACCCTCGTGTGGCTGTATGATCTTGTTCCAAGTGAGTTTTTGCCG
CAGAAGACTGCTGTGTTTTCCTTTGTTGTTGTTGTGGCCGAGCTGACATG
ATATTCCGCAATGATGGGGCATGGGTAGCTTGGAGAGGTGGGAAGTAATG
GTTTGTTGAATGGTGGTTGACTTCCAAATGCCTCGTGCGGTCCGACGTAG
AGCAACATGTCGTAAATACACGTGCCGGAAGGCGCGCGGTGGTTGGTCAT
TCATACTTCGGCGAAGCCTGCCTGTTCGGCAGGAAGTTTGGTTCTTGTAG
TTTGCGTGCCTATGATGTGTTCTTTGAAGCCGTGGGTTCTTCAACTACCT
CTATTTGATTATGGTTCTTGGGTAGAGGGGTGTGCCCGTGTGCGTCGCGA
TTTTTGGCGCTGGTGCTGCGAAGATGGCTGGAAACTGTTCCACCCTTGAC
GGTTGTCTGTCGCGTTGGCGAACCAGTGTAGCAGCCGTACGCAGTAGAAG
AGTGTTGTTGAAAACAATGATGGCCATCGCACGGCGGCAAAAGAACGAGA
GCTGTTCCCGCCTCTGGTTGCATCCAAGAACATGGATGGGTCACAGCTGT
TGCCACAGTTGTGCTTGTGGGGTTTTGCCGTTGGAGTGATGTCTGCGAGG
AATGTCCCTCCTTTTCGGCACCCCGAAACGAATGGCGGTGTGGTCTGTGT
GACGGGGCGCATCTGTGGCACGAAGAAGCTTAATTCGGATCATGGTGCTC
TCCATTAACCTTCGTCTCAGGAACATTCCACCGATCTATGCAAGCCAGTC
GTGTGGTCATTTAACAGAACGAACGAGCGAACGAACGAATGGCCTCGGTG
GTGTGCTGATTGTGTAGACAGCAGGAACATCTTGTGTGTGTAGTCGTTGC
CTCACAAGCTCCATCATCATCTGCATTGTGTGCATACGTAGTTCAAGCAT
GGAATATCAC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9915:1181..4190+ >mRNA_Ecto-sp13_S_contig9915.21561.1 ID=mRNA_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9915:1181..4190+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGGCACGGCTGCGGCGGCGGCGGAGGGGAAAACGAGCAGCGACGGCGC ACGAGTACCGGGGGCGTGCGGGAAGGCGGCGTACTGGCTGGCGAGGAGCG GCGGGTGGGTCCAGCTCGAGAGGCTCTGCGCGGAGGTGTCGGAGCGGCTG ATGGTGGAGGTCTCTTCGGGGGTCGGCAGCGCTGCCGACGTTCAGGCTCA GCAGGTCGTTCTCGCTGAAGCGGACGGTGTTCTCGCCGCGGTTCCTCCGG GCGTGAACGGGCCGGAGCTTTTTTTCCTCGGACGCTACAAAGAAATCGCG GATCTCCTCTCGGCCGAGGCGGCGGCGCAACCACCACCCCCGCATGCCTC GGGCACCGGGAATAGCTCGCCGGCCGCGGCGGGTCCCGGGGCCCGCCTGG CCGGCGCCCTCGCGGTGGACATGCTTGCCCCCCGTGGCAGCTGCGACGGC GATGCCGCGGTCGCCGGAGGTAGTGAGGCCCTTTCGACCCCGACGCCACC GCCCAGGACATGGGCCCACCTGCTTAGGCTGTCCGTCCCCGCGCTCAAAG CGGCGACTGACACTGCTGCTGCTGCTGCTACTGCGGGGGGGTCGGCAGCG GGTGCTGGCGAGGGAGAAGAAGCATCTGCTGGCGTGACCGTGGCGCAGGT GCACGCCCTGCTGGCCAAGCTGCAGGCCCTAGTGGCGAGCGAGCACCGCG TGGGGAGCGTGCGCGGGGTGTGGAACCGTTCCAGAGGGGGTCCTGGCTGT GGTGGCGGCACCTTGGCTACTGCGCCCGCGCCGTACGGGTTTTGCAGCGG TGGTGGGAGCAGTGTGGAGCAAGTGTCGGAGATTCGTCGGGCGTTGGCCG GCTGTTTGGGCGCCGCCATGATGGCTCAGAATACGGCGGAGGCTGCGCCT GAAGCTGTCGGGAGTGGCAGGCGGCGGGGTGGTCGGGGAGACTTTACGTT GTTGGGGACTAGGAGATTACCCGCGGAAGCGCTGATAGACCCTCGTGTGG CTGTATGA back to top
|