mRNA_Ecto-sp13_S_contig9915.21561.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9915.21561.1
Unique NamemRNA_Ecto-sp13_S_contig9915.21561.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Match: D8LCE2_ECTSI (Nuclear pore complex protein Nup85 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE2_ECTSI)

HSP 1 Score: 616 bits (1588), Expect = 1.770e-208
Identity = 345/420 (82.14%), Postives = 351/420 (83.57%), Query Frame = 3 
Query:    3 WELAATYLSGRSGRDGDGGGGNDVDDEAGLLRELALGVVPESERATHELVEWCRSRGLGEEVEAAVCRARGTTWIGKTGLSAVAMGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERLMVEVSSGVGSAADVQ-AQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIADLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDGDAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAXXXXXXXXXXXXXXXXEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV 1259
            WELAATYLSG S RDG    G+D DDEAGLLRELALGVVPESERATHELVEWCR+RGLGEEVEAAVCRARG  WI KTGLSAVAMGTA AAAEG+TSSDGARVPGACGKAAYWLA+ GGWVQLERLCAEVSERLMVEV SGVGSAADVQ AQQVVLAEADGVLAAVPPGVNGPEL FLGRYKEIADLLSAEAA QPPPPHASG G+SSPAA GPGARLAGALAVDMLAPRGSCDGDA VAG                           A  D                   EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGS VEQVSEIRRALAGCLGAAMMAQN AEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEAL+DPRVAV
Sbjct:  430 WELAATYLSGGSSRDG----GDDEDDEAGLLRELALGVVPESERATHELVEWCRARGLGEEVEAAVCRARGAAWIAKTGLSAVAMGTAVAAAEGETSSDGARVPGACGKAAYWLAKGGGWVQLERLCAEVSERLMVEVYSGVGSAADVQQAQQVVLAEADGVLAAVPPGVNGPELSFLGRYKEIADLLSAEAAGQPPPPHASGIGSSSPAAVGPGARLAGALAVDMLAPRGSCDGDAPVAG---------------------------AGADEGE----------------EASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGCGGGTLATAPAPYGFCSGGGSGVEQVSEIRRALAGCLGAAMMAQNAAEAAPEAVGSGRRRGGRGDFTLLGTRRLPAEALVDPRVAV 802
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9915.21561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCE2_ECTSI1.770e-20882.14Nuclear pore complex protein Nup85 n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9915contigEcto-sp13_S_contig9915:1181..4190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2197
Hectar predicted targeting categoryother localisation
Exons2
Cds size1008
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.4738054-UTR-Ecto-sp13_S_contig9915:1180..14341681464252.4738054-UTR-Ecto-sp13_S_contig9915:1180..1434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9915 1181..1434 +
1681464252.5235965-UTR-Ecto-sp13_S_contig9915:3255..41901681464252.5235965-UTR-Ecto-sp13_S_contig9915:3255..4190Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9915 3256..4190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.485414-CDS-Ecto-sp13_S_contig9915:1434..16291681464252.485414-CDS-Ecto-sp13_S_contig9915:1434..1629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9915 1435..1629 +
1681464252.5005076-CDS-Ecto-sp13_S_contig9915:2442..32551681464252.5005076-CDS-Ecto-sp13_S_contig9915:2442..3255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9915 2443..3255 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9915.21561.1prot_Ecto-sp13_S_contig9915.21561.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9915 1435..3255 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9915.21561.1

>prot_Ecto-sp13_S_contig9915.21561.1 ID=prot_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=336bp
MGTAAAAAEGKTSSDGARVPGACGKAAYWLARSGGWVQLERLCAEVSERL
MVEVSSGVGSAADVQAQQVVLAEADGVLAAVPPGVNGPELFFLGRYKEIA
DLLSAEAAAQPPPPHASGTGNSSPAAAGPGARLAGALAVDMLAPRGSCDG
DAAVAGGSEALSTPTPPPRTWAHLLRLSVPALKAATDTAAAAATAGGSAA
GAGEGEEASAGVTVAQVHALLAKLQALVASEHRVGSVRGVWNRSRGGPGC
GGGTLATAPAPYGFCSGGGSSVEQVSEIRRALAGCLGAAMMAQNTAEAAP
EAVGSGRRRGGRGDFTLLGTRRLPAEALIDPRVAV*
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mRNA from alignment at Ecto-sp13_S_contig9915:1181..4190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9915.21561.1 ID=mRNA_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9915:1181..4190+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGGAGCTCGCGGCGACGTACTTGAGCGGCAGGAGCGGCCGCGACGGC
GACGGCGGCGGCGGCAACGACGTCGACGACGAGGCCGGGCTTCTCCGAGA
GCTCGCGCTGGGGGTCGTGCCGGAGTCGGAGAGAGCGACCCACGAGCTCG
TGGAGTGGTGCCGATCTCGAGGCCTGGGGGAGGAGGTGGAGGCGGCCGTG
TGCCGCGCGAGGGGGACCACGTGGATAGGAAAGACGGGGTTGTCGGCGGT
GGCTATGGGCACGGCTGCGGCGGCGGCGGAGGGGAAAACGAGCAGCGACG
GCGCACGAGTACCGGGGGCGTGCGGGAAGGCGGCGTACTGGCTGGCGAGG
AGCGGCGGGTGGGTCCAGCTCGAGAGGCTCTGCGCGGAGGTGTCGGAGCG
GCTGATGGTGGAGGTCTCTTCGGGGGTCGGCAGCGCTGCCGACGTTCAGG
TGGGGGCACGCATTTTGGACCAATGGGAGTTGGAAGTTGGCTGGTAGCTT
GAGAGGTAATTTGCGTTTGGAGAGTGCGTTCGTTGCGTGGCAAGAGAGGC
ACAAGGGAGGGGAGTCATGGCGAGAACTGGGTTGAAAGTGGATCGCCAGC
ACTCGGACCTGGCGTGTCCAAGCTTCGCAAACATCGGTGCTCATGCTGCA
CTTCTATTTTTGATCGAACTTTGTGCGCATCTAATGATGTTGTATCGGTG
TTGTGTTCTTGAAGCGGTGGCTGCCTCTACCGATGTCTACAATTGTTTCG
TGGCCTGAACGGATTGCCTTTCTTCCCCAAATCCACAAATATGAGTCTAG
ATTCTGGAGATTTATCGAGAATTTGACGTCGACGGATGCGCGTGCCTCAT
GAGACGTGCCACGCGCAACCGCGGAGCGTGCTCACCCGGACCGGCGGAAA
GTGTTGTATTCTTGGTCCCTCGACAAGACAATCGTGTGTCCCTCACCATC
ACCAACGGTTCTACCTATATTTCGTGCGCGCCGCAATTCTCCGAGACGCT
CCCCTCCATGGTTTTCTCGGCAACTACAAGCTATTTTTTTTATCAGATGA
ACGCAACGCACTAGCCTTTACCTGAAAAACTATTGCTGTTTTGTGTTTGC
TTCCCCCACGCTCCTCTCCTTGGTTTTCTTCGCAACATCAAACTAGTTAT
TTCAGCAGATGAACGCAACGCACATCAGCCTAAGCTACTGCTGCCTCTGT
GTCTTCTATCCCCTGCGACTACGATTTTCGCTGCTGGTCTTGATCCCTTT
CCGGAACGGCAGGCTCAGCAGGTCGTTCTCGCTGAAGCGGACGGTGTTCT
CGCCGCGGTTCCTCCGGGCGTGAACGGGCCGGAGCTTTTTTTCCTCGGAC
GCTACAAAGAAATCGCGGATCTCCTCTCGGCCGAGGCGGCGGCGCAACCA
CCACCCCCGCATGCCTCGGGCACCGGGAATAGCTCGCCGGCCGCGGCGGG
TCCCGGGGCCCGCCTGGCCGGCGCCCTCGCGGTGGACATGCTTGCCCCCC
GTGGCAGCTGCGACGGCGATGCCGCGGTCGCCGGAGGTAGTGAGGCCCTT
TCGACCCCGACGCCACCGCCCAGGACATGGGCCCACCTGCTTAGGCTGTC
CGTCCCCGCGCTCAAAGCGGCGACTGACACTGCTGCTGCTGCTGCTACTG
CGGGGGGGTCGGCAGCGGGTGCTGGCGAGGGAGAAGAAGCATCTGCTGGC
GTGACCGTGGCGCAGGTGCACGCCCTGCTGGCCAAGCTGCAGGCCCTAGT
GGCGAGCGAGCACCGCGTGGGGAGCGTGCGCGGGGTGTGGAACCGTTCCA
GAGGGGGTCCTGGCTGTGGTGGCGGCACCTTGGCTACTGCGCCCGCGCCG
TACGGGTTTTGCAGCGGTGGTGGGAGCAGTGTGGAGCAAGTGTCGGAGAT
TCGTCGGGCGTTGGCCGGCTGTTTGGGCGCCGCCATGATGGCTCAGAATA
CGGCGGAGGCTGCGCCTGAAGCTGTCGGGAGTGGCAGGCGGCGGGGTGGT
CGGGGAGACTTTACGTTGTTGGGGACTAGGAGATTACCCGCGGAAGCGCT
GATAGACCCTCGTGTGGCTGTATGATCTTGTTCCAAGTGAGTTTTTGCCG
CAGAAGACTGCTGTGTTTTCCTTTGTTGTTGTTGTGGCCGAGCTGACATG
ATATTCCGCAATGATGGGGCATGGGTAGCTTGGAGAGGTGGGAAGTAATG
GTTTGTTGAATGGTGGTTGACTTCCAAATGCCTCGTGCGGTCCGACGTAG
AGCAACATGTCGTAAATACACGTGCCGGAAGGCGCGCGGTGGTTGGTCAT
TCATACTTCGGCGAAGCCTGCCTGTTCGGCAGGAAGTTTGGTTCTTGTAG
TTTGCGTGCCTATGATGTGTTCTTTGAAGCCGTGGGTTCTTCAACTACCT
CTATTTGATTATGGTTCTTGGGTAGAGGGGTGTGCCCGTGTGCGTCGCGA
TTTTTGGCGCTGGTGCTGCGAAGATGGCTGGAAACTGTTCCACCCTTGAC
GGTTGTCTGTCGCGTTGGCGAACCAGTGTAGCAGCCGTACGCAGTAGAAG
AGTGTTGTTGAAAACAATGATGGCCATCGCACGGCGGCAAAAGAACGAGA
GCTGTTCCCGCCTCTGGTTGCATCCAAGAACATGGATGGGTCACAGCTGT
TGCCACAGTTGTGCTTGTGGGGTTTTGCCGTTGGAGTGATGTCTGCGAGG
AATGTCCCTCCTTTTCGGCACCCCGAAACGAATGGCGGTGTGGTCTGTGT
GACGGGGCGCATCTGTGGCACGAAGAAGCTTAATTCGGATCATGGTGCTC
TCCATTAACCTTCGTCTCAGGAACATTCCACCGATCTATGCAAGCCAGTC
GTGTGGTCATTTAACAGAACGAACGAGCGAACGAACGAATGGCCTCGGTG
GTGTGCTGATTGTGTAGACAGCAGGAACATCTTGTGTGTGTAGTCGTTGC
CTCACAAGCTCCATCATCATCTGCATTGTGTGCATACGTAGTTCAAGCAT
GGAATATCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9915:1181..4190+

>mRNA_Ecto-sp13_S_contig9915.21561.1 ID=mRNA_Ecto-sp13_S_contig9915.21561.1|Name=mRNA_Ecto-sp13_S_contig9915.21561.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9915:1181..4190+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCACGGCTGCGGCGGCGGCGGAGGGGAAAACGAGCAGCGACGGCGC
ACGAGTACCGGGGGCGTGCGGGAAGGCGGCGTACTGGCTGGCGAGGAGCG
GCGGGTGGGTCCAGCTCGAGAGGCTCTGCGCGGAGGTGTCGGAGCGGCTG
ATGGTGGAGGTCTCTTCGGGGGTCGGCAGCGCTGCCGACGTTCAGGCTCA
GCAGGTCGTTCTCGCTGAAGCGGACGGTGTTCTCGCCGCGGTTCCTCCGG
GCGTGAACGGGCCGGAGCTTTTTTTCCTCGGACGCTACAAAGAAATCGCG
GATCTCCTCTCGGCCGAGGCGGCGGCGCAACCACCACCCCCGCATGCCTC
GGGCACCGGGAATAGCTCGCCGGCCGCGGCGGGTCCCGGGGCCCGCCTGG
CCGGCGCCCTCGCGGTGGACATGCTTGCCCCCCGTGGCAGCTGCGACGGC
GATGCCGCGGTCGCCGGAGGTAGTGAGGCCCTTTCGACCCCGACGCCACC
GCCCAGGACATGGGCCCACCTGCTTAGGCTGTCCGTCCCCGCGCTCAAAG
CGGCGACTGACACTGCTGCTGCTGCTGCTACTGCGGGGGGGTCGGCAGCG
GGTGCTGGCGAGGGAGAAGAAGCATCTGCTGGCGTGACCGTGGCGCAGGT
GCACGCCCTGCTGGCCAAGCTGCAGGCCCTAGTGGCGAGCGAGCACCGCG
TGGGGAGCGTGCGCGGGGTGTGGAACCGTTCCAGAGGGGGTCCTGGCTGT
GGTGGCGGCACCTTGGCTACTGCGCCCGCGCCGTACGGGTTTTGCAGCGG
TGGTGGGAGCAGTGTGGAGCAAGTGTCGGAGATTCGTCGGGCGTTGGCCG
GCTGTTTGGGCGCCGCCATGATGGCTCAGAATACGGCGGAGGCTGCGCCT
GAAGCTGTCGGGAGTGGCAGGCGGCGGGGTGGTCGGGGAGACTTTACGTT
GTTGGGGACTAGGAGATTACCCGCGGAAGCGCTGATAGACCCTCGTGTGG
CTGTATGA
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