mRNA_Ecto-sp13_S_contig99133.21560.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99133.21560.1
Unique NamemRNA_Ecto-sp13_S_contig99133.21560.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Match: D7FKZ9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 3.400e-10
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    1 LDLLLRWGADETALDNEGRTPAERLN---DMPAAAGPGSRRQGVASPRLAGHAPCTRFDGE 174
            + LLLRWGADET LD   +TPA+R N   +    AGPGSRRQGVA P LA HA     +GE
Sbjct:  326 VSLLLRWGADETILDEHHKTPADRTNHQRESAPPAGPGSRRQGVAPPGLARHASFAHPEGE 386
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BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 5.350e-6
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   50 RAALRRKDSTT----CPLLLARAPADRAWRRRGWLVMLRARAST 169
            R A+ R D+T       +LLARAPADRAWRRRGW+VMLRAR+ T
Sbjct:  317 RLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSET 360
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BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 5.310e-5
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 2 
Query:   89 LLLARAPADRAWRRRGWLVMLRARASTA 172
            LLL+RAPADRAWRRRGWLVMLR+R S A
Sbjct:   84 LLLSRAPADRAWRRRGWLVMLRSRDSKA 111
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BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 48.1 bits (113), Expect = 6.640e-5
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 2 
Query:    5 TSCSGGARMKPHWTTRAALRRKDSTTCPLLLARAPADRAWRRRGWLVMLRARA 163
            T C GG+  +    T+   R +      +LLARAPADR WRRR WLVMLRARA
Sbjct:  404 TRCVGGSATRHDSLTKEIQRAR------VLLARAPADRTWRRRCWLVMLRARA 450
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BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Match: D7FKZ6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ6_ECTSI)

HSP 1 Score: 48.1 bits (113), Expect = 6.640e-5
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 2 
Query:   89 LLLARAPADRAWRRRGWLVMLRAR 160
            LLLARAPADRAWRRRGWLVMLR+R
Sbjct:  476 LLLARAPADRAWRRRGWLVMLRSR 499
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99133.21560.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKZ9_ECTSI3.400e-1057.38Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI5.350e-663.64Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LNI8_ECTSI5.310e-585.71EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5K1F4_9PHAE6.640e-552.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ6_ECTSI6.640e-595.83Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99133contigEcto-sp13_S_contig99133:3..217 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.9
Seed ortholog evalue7.3e-09
Seed eggNOG ortholog2880.D7FKZ9
Preferred nameANKRD29
Model size174
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Cds size174
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.420569-CDS-Ecto-sp13_S_contig99133:2..901681464252.420569-CDS-Ecto-sp13_S_contig99133:2..90Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99133 3..90 +
1681464252.4365556-CDS-Ecto-sp13_S_contig99133:131..2171681464252.4365556-CDS-Ecto-sp13_S_contig99133:131..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99133 132..217 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99133.21560.1prot_Ecto-sp13_S_contig99133.21560.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99133 3..217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99133.21560.1

>prot_Ecto-sp13_S_contig99133.21560.1 ID=prot_Ecto-sp13_S_contig99133.21560.1|Name=mRNA_Ecto-sp13_S_contig99133.21560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp
LDLLLRWGADETALDNEGRTPAERLNDMPAAAGPGSRRQGVASPRLAGHA
PCTRFDGE
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mRNA from alignment at Ecto-sp13_S_contig99133:3..217+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99133.21560.1 ID=mRNA_Ecto-sp13_S_contig99133.21560.1|Name=mRNA_Ecto-sp13_S_contig99133.21560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=215bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99133:3..217+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGACCTCTTGCTCAGGTGGGGCGCGGATGAAACCGCACTGGACAACGA
GGGCCGCACTCCGGCGGAAAGACTCAACGACATGCCCGGTGACCGTTCGT
GCTCCCAAGAAGACTTCGACCGGGCACAGCTGCTGCTGGCCCGGGCTCCC
GCCGACAGGGCGTGGCGTCGCCGCGGCTGGCTGGTCATGCTCCGTGCACG
CGCTTCGACGGCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99133:3..217+

>mRNA_Ecto-sp13_S_contig99133.21560.1 ID=mRNA_Ecto-sp13_S_contig99133.21560.1|Name=mRNA_Ecto-sp13_S_contig99133.21560.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99133:3..217+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGACCTCTTGCTCAGGTGGGGCGCGGATGAAACCGCACTGGACAACGA
GGGCCGCACTCCGGCGGAAAGACTCAACGACATGCCCGCTGCTGCTGGCC
CGGGCTCCCGCCGACAGGGCGTGGCGTCGCCGCGGCTGGCTGGTCATGCT
CCGTGCACGCGCTTCGACGGCGAG
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