mRNA_Ecto-sp13_S_contig9912.21558.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9912.21558.1
Unique NamemRNA_Ecto-sp13_S_contig9912.21558.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.320e-49
Identity = 90/93 (96.77%), Postives = 90/93 (96.77%), Query Frame = 1 
Query:    1 LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGLRGGPPGHPMHGHGHGPGGRF 279
            LKRSKSQVA TIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRD KG RGGPPGHPMHGHGHGPGGRF
Sbjct:  262 LKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRF 354
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BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 5.670e-47
Identity = 87/94 (92.55%), Postives = 88/94 (93.62%), Query Frame = 1 
Query:    1 LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGLRGGPPGHPMHGHGHGPGGRFG 282
            LKRSKSQVA+TIVADHVQRLL LNGVELP DEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKG RGGPPGHPMHGH   PGGRFG
Sbjct:  237 LKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGPRGGPPGHPMHGHXXXPGGRFG 330
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9912.21558.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE3.320e-4996.77PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK7_ECTSI5.670e-4792.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9912contigEcto-sp13_S_contig9912:5512..6101 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size590
Hectar predicted targeting categoryother localisation
Exons1
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.2215865-CDS-Ecto-sp13_S_contig9912:5513..61011681464252.2215865-CDS-Ecto-sp13_S_contig9912:5513..6101Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9912 5514..6101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9912.21558.1prot_Ecto-sp13_S_contig9912.21558.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9912 5514..6101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9912.21558.1

>prot_Ecto-sp13_S_contig9912.21558.1 ID=prot_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
LKRSKSQVAQTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRL
GLLGPEFLEDMPDGHYHRDGKGLRGGPPGHPMHGHGHGPGGRFGGGGGGG
GGGSRGGGPLPGRGGGAPPMMPFHSPPPFHYQGGGFSGPHGGGGAEGAAH
RSPPRRGPPPPHMMGMGMGGPPMEPSHDHHHQRGGGRHPPPPHMRG
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mRNA from alignment at Ecto-sp13_S_contig9912:5512..6101-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9912.21558.1 ID=mRNA_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=590bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9912:5512..6101- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAAGCGTAGCAAGAGCCAGGTGGCGCAGACCATCGTGGCCGACCACGT
CCAGCGCCTTCTCGGCCTCAACGGCGTCGAGCTGCCCGAGGACGAGGTGC
AGCCGCTCCTCCAGGCCCTGCGCGTACGCTCCAGGCGCCTGGTCAGGCTC
GGTCTCCTCGGTCCCGAGTTCCTGGAGGACATGCCGGACGGCCACTACCA
CCGCGACGGGAAAGGCCTGCGGGGGGGCCCGCCCGGCCACCCGATGCACG
GGCATGGGCACGGACCCGGAGGCCGCTTTGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCAGCAGGGGTGGTGGTCCCCTTCCCGGCAGGGGGGGCGGGGC
GCCGCCCATGATGCCGTTCCACTCGCCCCCGCCTTTCCACTATCAGGGCG
GAGGCTTCTCTGGTCCTCACGGCGGCGGCGGAGCGGAGGGTGCTGCGCAC
CGGTCTCCGCCTCGGCGCGGACCGCCCCCCCCGCACATGATGGGCATGGG
CATGGGGGGTCCCCCGATGGAGCCGTCCCACGACCACCACCACCAGCGTG
GAGGAGGCCGGCACCCTCCCCCGCCGCACATGCGCGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9912:5512..6101-

>mRNA_Ecto-sp13_S_contig9912.21558.1 ID=mRNA_Ecto-sp13_S_contig9912.21558.1|Name=mRNA_Ecto-sp13_S_contig9912.21558.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9912:5512..6101- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGAAGCGTAGCAAGAGCCAGGTGGCGCAGACCATCGTGGCCGACCACGT
CCAGCGCCTTCTCGGCCTCAACGGCGTCGAGCTGCCCGAGGACGAGGTGC
AGCCGCTCCTCCAGGCCCTGCGCGTACGCTCCAGGCGCCTGGTCAGGCTC
GGTCTCCTCGGTCCCGAGTTCCTGGAGGACATGCCGGACGGCCACTACCA
CCGCGACGGGAAAGGCCTGCGGGGGGGCCCGCCCGGCCACCCGATGCACG
GGCATGGGCACGGACCCGGAGGCCGCTTTGGCGGCGGCGGCGGCGGCGGC
GGCGGCGGCAGCAGGGGTGGTGGTCCCCTTCCCGGCAGGGGGGGCGGGGC
GCCGCCCATGATGCCGTTCCACTCGCCCCCGCCTTTCCACTATCAGGGCG
GAGGCTTCTCTGGTCCTCACGGCGGCGGCGGAGCGGAGGGTGCTGCGCAC
CGGTCTCCGCCTCGGCGCGGACCGCCCCCCCCGCACATGATGGGCATGGG
CATGGGGGGTCCCCCGATGGAGCCGTCCCACGACCACCACCACCAGCGTG
GAGGAGGCCGGCACCCTCCCCCGCCGCACATGCGCGGC
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