mRNA_Ecto-sp13_S_contig9909.21553.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9909.21553.1
Unique NamemRNA_Ecto-sp13_S_contig9909.21553.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9909.21553.1 vs. uniprot
Match: A0A6H5L9K9_9PHAE (GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9K9_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 4.770e-125
Identity = 240/267 (89.89%), Postives = 244/267 (91.39%), Query Frame = 1 
Query:    1 PTPNSDARQDHASSKPRDKNVIISGASLLNPSDARHRRSRSRAASRGGASGTLVSAGDEDXXXXXXXXXXXXXXXXXXXGRGGQFQAPRLSMIENVVHPREGAAPPPAPVPTEIWKERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTTYMGNNFQNTSGMVGAGSTAGGRATTGIVPPETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARRPVVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR 801
            P    DARQDHASSKPRDKNVIISGASLLNPS+ RHRRSRSRAASRGGASGT V AGDE XXXXXXXXXXXXX       RGGQFQAPRL+MIENVVHPREGAAPPPAPVPTEIW ERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNT Y G+N+ NTSGM GAGSTAGGR TTGIV PETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARR VVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR
Sbjct: 2517 PEQRGDARQDHASSKPRDKNVIISGASLLNPSNDRHRRSRSRAASRGGASGTHVFAGDEXXXXXXXXXXXXXX-------RGGQFQAPRLAMIENVVHPREGAAPPPAPVPTEIWNERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTAYGGSNYHNTSGMAGAGSTAGGRGTTGIVSPETEVPLPYAEDVLALQGAAERGIKKFEVAPLSVSGQQPPRVQTARRAVVQAADNFAAEDSADEDSDETGSIISAISAGSFQPRR 2776
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9909.21553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L9K9_9PHAE4.770e-12589.89GT4 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9909contigEcto-sp13_S_contig9909:238..3293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1064
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000620.1
Cds size618
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9909.21553.1prot_Ecto-sp13_S_contig9909.21553.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9909 424..3033 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.890285-UTR-Ecto-sp13_S_contig9909:237..4231681464251.890285-UTR-Ecto-sp13_S_contig9909:237..423Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9909 238..423 +
1681464251.9564447-UTR-Ecto-sp13_S_contig9909:3033..32931681464251.9564447-UTR-Ecto-sp13_S_contig9909:3033..3293Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9909 3034..3293 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.9095206-CDS-Ecto-sp13_S_contig9909:423..6181681464251.9095206-CDS-Ecto-sp13_S_contig9909:423..618Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9909 424..618 +
1681464251.9213166-CDS-Ecto-sp13_S_contig9909:1272..14881681464251.9213166-CDS-Ecto-sp13_S_contig9909:1272..1488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9909 1273..1488 +
1681464251.9327443-CDS-Ecto-sp13_S_contig9909:2121..21991681464251.9327443-CDS-Ecto-sp13_S_contig9909:2121..2199Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9909 2122..2199 +
1681464251.9441352-CDS-Ecto-sp13_S_contig9909:2904..30331681464251.9441352-CDS-Ecto-sp13_S_contig9909:2904..3033Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9909 2905..3033 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9909.21553.1

>prot_Ecto-sp13_S_contig9909.21553.1 ID=prot_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp
MQQQPQQQPQQQQEQEQGRGGQFQAPRLSMIENVVHPREGAAPPPAPVPT
EIWKERAQSRGNLVKAMVASQHLSSSSGTGLRGASPRSNTTYMGNNFQNT
SGMVGAGSTAGGRATTGIVPPETEVPLPYAEDVLALQGAAERGIKKFEVA
PLSVSGQQPPRVQTARRPVVQAADNFAAEDSADEDSDETGSIISAISAGS
FQPRR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9909:238..3293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9909.21553.1 ID=mRNA_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9909:238..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTACCCCGAACAGCGATGCCAGACAAGATCACGCCTCCTCCAAGCCGAG
AGACAAGAACGTCATCATCTCGGGGGCCTCGCTGCTAAACCCTTCAGACG
CCCGCCACCGGAGGTCCCGGTCTCGCGCCGCGTCCAGGGGCGGCGCCTCG
GGCACTCTCGTCTCCGCCGGCGACGAGGATCAGGAGATGCAACAGCAGCC
GCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGGAGCAGGGGCGCGGGGGGC
AGTTCCAAGCCCCGAGGCTCTCCATGATAGAAAACGTCGTGCATCCGCGG
GAGGGAGCCGCGCCGCCCCCCGCCCCCGTGCCCACGGAGATCTGGAAGGA
GCGTGCCCAGAGTCGGGGTAACTTGGTCAAGGTGTGTCTGGAAGTTGGTT
CTGTGTGCGTCCGGAGTATCTTGGTTAAGGTGTGTCTGGAAGGTGTTTCT
GTTCGCGTCCAGGGTATCTTGGTCAAGGTGTGTCGGCAAGTTAGTTGTGA
TGGCATCCGCGGTAACTTGGGTCAAAGGAGTTGTTCATGTGCACGTGCGT
GTGATGCGGTGCTCTGGACTAATGCTAGTCTCGTTTGCTGCGTGGTGTTG
TCTTCTTCTGTGGGTGCAAGGCGTTGTGGGGAGGGCGTTTTATTGGTGCC
GCCGTGGTTTCGGGTGTCGTTTAACTCAGTCTCCCGTTGTAGAGGGGGTG
TAGGAGTAGCTCAAGCACTCGCCGATGCTCGAATCGTGAGCTAGCTGCAA
TAGCAACAGCAGCAGCAAACAGCATCTAGTCTGTTTTTGTTGGTGCTTAT
GCTGGCTTGGCAGCTCTTCCGCCGATCACGGCAGCACAGCACACGGGGCC
CCTAGCACTCTGCCAATCACGTGGCTGCTTTAATTGTTCTTCTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTTCTTATGATG
GTTGTCGTCGTTGTAGTCGTCGCTGCTAACCGTTGTCAACGCCTCTCTCG
TGCTGCTCCCCTCCCCCGGAACCGATATCAACAAGGCGATGGTGGCTTCC
CAGCACCTGTCGTCATCGTCGGGGACGGGTCTGCGCGGCGCCTCTCCGCG
GTCCAACACGACCTACATGGGCAACAACTTCCAAAACACTAGCGGCATGG
TGGGGGCTGGCTCCACCGCTGGGGGCAGAGCTACAACAGGGATTGTCCCC
CCGGAGACCGAAGTCCCCCTTCCGTACGCCGAGGACGTGCTAGCGTTGCA
GGTACGTGGGCCATGCTACTGCTTGCATGCGCCGGGATACAGGCTTGGGT
GACCGTCGTAAGCTGTTGGGGTTTCGCCCGGCGGAACTTTGTTTTATTTT
TTTTCTGCCAGGCAGATCAGCCGTTTGCCCTCGGCGAGGATTCTTTTATA
ACACCCAAAAGTTGTCTCTTTTTTCTTTATGTAGAAGGTGTTTGTGCGGT
CACAGAAAGAGTACCCGTTCGAGAGATAATTATTGGCCCAATCGAAATCC
GTGTGTTGTTGAAATTTTTCCTTGCGTCATCTCTTGGAGGTAGTCGCCGG
GAGGCATGCCATCAGCAGAGACGTGCAGCAGCAAGCATCCCACACGGCCG
CGGTGATGAGGCCGGTGGCGTACTGGCCGTCTCCGAAAGGGCAGCGGTCC
CGCTTCAGCATGCCGCCTACGATCATGCGAACTCCCTTCGTAACCTCGAG
CAAGTGTGCATTTATTATTCTGCATTTAGGACGTGAAGTTTTGACAACAC
GCACGACGACGAAACAGCAACACGCACAACTCCCCTCCTTAACTTACCCC
GCCCCCTATTCAACTACTGGCGTATCCTCTTTTTTGTTGTCATGGGGCGT
TTTTTCCCGGCGGGAATGAACATGACGTTGCCAGGGCGCGGCCGAGCGAG
GGATCAAGAAGTTCGAGGTGGCCCCCCTCTCGGTCTCGGGACAACAGCCT
CCAAGGGTACAGGTGCTTAGATTTATTTAACTCGATGGTGCAAGAAAAAT
GCAGCGCCTACACAAGTGAAGCCGCACACTGCTGTACAAGCTTTCCGATA
ACAAGTTCGGTGCACGTGTGTTGTTGTTACTAGCATCTCGATAGGGCTTA
CCGGCTAACCACTGAAAAAACGTCAGTTTCAATTAAGTGTGTAGATTTGG
GTCGTTTTATCTTTTAGTGTTTCCGTCTCCGTTCGAATTTCACATGAACC
CTTTGTGGCGGAAGTGTTGAAGTGGATGGGGAGCATTCCGTCGGGAATGT
GTCCTCGCCAGGCGATGCCCTCCAGTGCTTGCGGTTGAACCGTTTCAGTG
TTTTTTTTTGTGTTTGCTCTCTTGATCGCAGCATCTTACGTAGCCTCTTA
CGTCGTGAACCAAAAAATAAGACCGAACACCCGAAAAAGAACGGCCCAGC
CTCCCTCACCACTAACACTAATGCCCCTGTTTCCTCCGTGAGGTTGTATT
CCATGCACTGAGCGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCCCCCCACCACACCCCACCAAACCCACCC
CCGCCGGCGCCGTCTCGGGCCGCCCATCCAGACCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCTCCCTCCCCTCCTTGTCGTGAATGCCGTACATAACA
AACGGATTACTCGGCAGACTGCGCGGAGGCCGGTTGTTCAGGCCGCGGAC
AACTTCGCGGCCGAAGATTCCGCCGACGAGGACTCCGACGAGACAGGCTC
CATAATATCCGCAATTTCCGCAGGCAGCTTCCAGCCGCGGCGCTAGGCTG
GTTCGTCCCCAGCAGCAGTCGCAAAAGCATCATCAGCGGCGGCCACTGAG
CCAGCAGCAGTCGACAAAATTTAAGTTCCCGCGAGGGCGGTCCGCTGGCT
CTGATGATGCTTTTAAAGGACCGCCCGACCCAAGAAGAGCGGAAAAAGAA
AGAAGGCCTCCCGCACGATCAAAGTAACATCATACGTTTAGCAGGCTTTG
GCGAAACGTCGATTTGGAGGGAGGTTATGGCCAACAGAGCATTGCGATCA
ATGGCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9909:238..3293+

>mRNA_Ecto-sp13_S_contig9909.21553.1 ID=mRNA_Ecto-sp13_S_contig9909.21553.1|Name=mRNA_Ecto-sp13_S_contig9909.21553.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9909:238..3293+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAACAGCAGCCGCAGCAGCAGCCGCAGCAGCAGCAGGAGCAGGAGCA
GGGGCGCGGGGGGCAGTTCCAAGCCCCGAGGCTCTCCATGATAGAAAACG
TCGTGCATCCGCGGGAGGGAGCCGCGCCGCCCCCCGCCCCCGTGCCCACG
GAGATCTGGAAGGAGCGTGCCCAGAGTCGGGGTAACTTGGTCAAGGCGAT
GGTGGCTTCCCAGCACCTGTCGTCATCGTCGGGGACGGGTCTGCGCGGCG
CCTCTCCGCGGTCCAACACGACCTACATGGGCAACAACTTCCAAAACACT
AGCGGCATGGTGGGGGCTGGCTCCACCGCTGGGGGCAGAGCTACAACAGG
GATTGTCCCCCCGGAGACCGAAGTCCCCCTTCCGTACGCCGAGGACGTGC
TAGCGTTGCAGGGCGCGGCCGAGCGAGGGATCAAGAAGTTCGAGGTGGCC
CCCCTCTCGGTCTCGGGACAACAGCCTCCAAGGGTACAGACTGCGCGGAG
GCCGGTTGTTCAGGCCGCGGACAACTTCGCGGCCGAAGATTCCGCCGACG
AGGACTCCGACGAGACAGGCTCCATAATATCCGCAATTTCCGCAGGCAGC
TTCCAGCCGCGGCGCTAG
back to top