mRNA_Ecto-sp13_S_contig9906.21551.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9906.21551.1
Unique NamemRNA_Ecto-sp13_S_contig9906.21551.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9906.21551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9906contigEcto-sp13_S_contig9906:4310..4985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size678
Hectar predicted targeting categoryother localisation
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.7239492-UTR-Ecto-sp13_S_contig9906:4309..45561681464251.7239492-UTR-Ecto-sp13_S_contig9906:4309..4556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9906 4310..4556 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.7348914-CDS-Ecto-sp13_S_contig9906:4556..49851681464251.7348914-CDS-Ecto-sp13_S_contig9906:4556..4985Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9906 4557..4985 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9906.21551.1prot_Ecto-sp13_S_contig9906.21551.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9906 4557..4985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9906.21551.1

>prot_Ecto-sp13_S_contig9906.21551.1 ID=prot_Ecto-sp13_S_contig9906.21551.1|Name=mRNA_Ecto-sp13_S_contig9906.21551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MRGVGGSRCVHRQSCWFNFILTERTTDLTFLESGLNQTIFEMSHEDFLSG
IIGEGPLITWWDERQLINRLDHYNNAEDCICLEEQEIIWAAIVHYEACFV
ADWMVFRGYIATPEWHDDCDSVFLCVPHDASTWDQWLQSNLMM
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mRNA from alignment at Ecto-sp13_S_contig9906:4310..4985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9906.21551.1 ID=mRNA_Ecto-sp13_S_contig9906.21551.1|Name=mRNA_Ecto-sp13_S_contig9906.21551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=676bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9906:4310..4985+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCGTACATTTCTATTCGAAGTTGAGACGCGACGCGTATTATAGGAGGG
AGAGAGATTCACCAACTGTCTTTGTCGCAGACAAGAGTTGTTTAGGGTGC
TACCCTTCTGTATCGAGCCAGGCATGCTAGAGACTCGGTTGGCTTCTCGT
CCCCCGTACCGAAATAAAAAAAAGCCGTTGAGCGGAACAAAGCAGAAAGT
TGTTTGTTCAGAATGCAACGGGGCCACGCTGACGAGACCGATTTTATATG
AGGGGTGTAGGGGGTTCAAGGTGTGTTCACAGACAAAGTTGTTGGTTCAA
TTTTATCCTCACAGAGCGCACTACCGACCTCACTTTCCTCGAATCTGGGC
TAAACCAAACCATTTTTGAGATGTCTCACGAAGACTTCCTCTCGGGTATT
ATCGGTGAAGGACCATTGATCACCTGGTGGGATGAGCGCCAGCTTATAAA
TCGTTTGGACCACTATAATAATGCTGAAGACTGCATATGCCTCGAAGAGC
AGGAGATTATCTGGGCTGCGATAGTACACTACGAAGCGTGTTTTGTTGCC
GACTGGATGGTTTTCAGGGGATATATTGCAACACCGGAGTGGCACGACGA
TTGTGATAGTGTTTTTTTATGTGTCCCCCATGACGCTTCCACATGGGACC
AGTGGTTGCAATCCAATTTGATGATG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9906:4310..4985+

>mRNA_Ecto-sp13_S_contig9906.21551.1 ID=mRNA_Ecto-sp13_S_contig9906.21551.1|Name=mRNA_Ecto-sp13_S_contig9906.21551.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9906:4310..4985+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGGTGTAGGGGGTTCAAGGTGTGTTCACAGACAAAGTTGTTGGTT
CAATTTTATCCTCACAGAGCGCACTACCGACCTCACTTTCCTCGAATCTG
GGCTAAACCAAACCATTTTTGAGATGTCTCACGAAGACTTCCTCTCGGGT
ATTATCGGTGAAGGACCATTGATCACCTGGTGGGATGAGCGCCAGCTTAT
AAATCGTTTGGACCACTATAATAATGCTGAAGACTGCATATGCCTCGAAG
AGCAGGAGATTATCTGGGCTGCGATAGTACACTACGAAGCGTGTTTTGTT
GCCGACTGGATGGTTTTCAGGGGATATATTGCAACACCGGAGTGGCACGA
CGATTGTGATAGTGTTTTTTTATGTGTCCCCCATGACGCTTCCACATGGG
ACCAGTGGTTGCAATCCAATTTGATGATG
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