mRNA_Ecto-sp13_S_contig12605.2155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE) HSP 1 Score: 538 bits (1387), Expect = 1.670e-189 Identity = 272/285 (95.44%), Postives = 273/285 (95.79%), Query Frame = 1
Query: 1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALTGTTVANGR 855
QRP SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAA A G DEGCALAGSLSKGLCYVN+KMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAL GTTVANGR
Sbjct: 36 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGG------DEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI) HSP 1 Score: 322 bits (825), Expect = 1.110e-105 Identity = 170/197 (86.29%), Postives = 177/197 (89.85%), Query Frame = 1
Query: 1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGL 591
+RP SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQR+LGRGSVSTKEFQ+CLWDGLGRVVERGHAA +A G DEGCALAGSLSKGLCY+NRKMRESSSIQA RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG + G G+
Sbjct: 36 ERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGG------DEGCALAGSLSKGLCYINRKMRESSSIQA---RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGKGARKTTGTGM 223
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA) HSP 1 Score: 265 bits (678), Expect = 1.250e-82 Identity = 133/261 (50.96%), Postives = 183/261 (70.11%), Query Frame = 1
Query: 28 LSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKA--RPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKI 804
+ +FQ T+EA ++F++SYL+MHRRN++ VAC S ++FPTPA+E++ SL G VS+K Q+C+ DGL R + A G A +P + S +A +LS+ LC+ +RK+ E+ S+Q R LV+ PD PE+YN+VMN IFSAQKA + VDC +G S F+QQAA +TGG+Y Q + Q + LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C TCGTRA PK +
Sbjct: 32 VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGL-RELMSASACGTASVQPAVSSK-----APIAKALSQALCFTHRKITENPSVQT---RLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLL 283
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI) HSP 1 Score: 211 bits (538), Expect = 4.600e-64 Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1
Query: 550 LTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALTGTTVANGRS 858
L GGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG+HKAL GTTVANGRS
Sbjct: 15 LPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANGRS 117
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD) HSP 1 Score: 206 bits (524), Expect = 2.630e-59 Identity = 119/272 (43.75%), Postives = 168/272 (61.76%), Query Frame = 1
Query: 1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKR 810
QR G G +FQ V +TL+FV SYL++HR N + +A A ++ +++P P +G S Q+ + +V+++ A + P P+ + A+A S+S+ LC++NR + E S ++ R LV+ SPDV E Y S+MN IFSAQK GV VD VL + S+FLQQAAYLTGG+Y + + GL QY+ + +LP S RK LKL +Q SVDFRA CFCHKRV+ A+VC VCLS+FCEF P+C+TCG R+ + K+
Sbjct: 50 QRSGGGP---QAFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDP---------NQGDTSGSAEQSAKVNA--KVMQKLQALSEL-PVDPA--KPNATAIAASISRALCFINRAINEQSDLRP---RILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKK 301
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA) HSP 1 Score: 203 bits (516), Expect = 3.470e-58 Identity = 117/268 (43.66%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 31 SSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLY---LEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 822
S+FQ V +TL+FV +YL++HR N + VA A + +++P +Q + G S K + V+++ A G A + A+A SLS+ LC++NR +RE S ++ R LV+ SPDV + Y S+MN IFSAQK V VD C + E S+FLQQAAYLTGG+Y ++H G L QY+ + +LP S RK LKL +Q SVDFRA CFCHK V+ A+VC VCLS+FCEF P+C+TCG R+ + K+ + K
Sbjct: 53 SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPDA---EQQDTSGSAEQSAKVNTS--------VLQKLRALGNAPI---DASKPNATAIAASLSRALCFINRAIREQSDLRP---RVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQK 301
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A8K1C5A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A8_PYTOL) HSP 1 Score: 204 bits (518), Expect = 5.590e-58 Identity = 118/254 (46.46%), Postives = 159/254 (62.60%), Query Frame = 1
Query: 34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRA 789
SFQ + +TL+FV SYL++HR N + +A A S +++P PA + + G S K RV+E+ A + P PS + A+A S+S+ LC++NR + E++ + SP R LV+ SPDV E Y S+MN IFSAQK V VD +L E S F+QQAAYLTGG+Y + + GL +Y+ + +LP S RK LKL TQ SVDFRA CFCH+ VV AYVC VCLS+FCEF P+C+TCG R+
Sbjct: 95 SFQQLISSTLVFVNSYLLLHRNNRIVIIAAHAGRSEMLYPDPA---QNDTSGTAEQSLKVTN--------RVMEKLKALSEI-PMDPS--KPNATAIAASISRSLCFINRAITENADL--SP-RILVIQKSPDVSEHYISIMNGIFSAQKKNVAVDACILSREHSPFMQQAAYLTGGIYYKPNDHSGLLEYLLSIYLPDPSLRKLLKLPTQDSVDFRAMCFCHQEVVSTAYVCPVCLSLFCEFKPICSTCGIRS 331
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM) HSP 1 Score: 201 bits (510), Expect = 2.060e-57 Identity = 115/270 (42.59%), Postives = 160/270 (59.26%), Query Frame = 1
Query: 10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHQGV-GLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG 813
G G + Q + +TL+FV SYL++HR N + +A A +S +++P P E+E S G + K + R+ + A P P+ A+A S+S+ LC++NR + E ++ R LV+ SPDV E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + G GL QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ AYVC VCLS+FCEF P+C+TCG R+ + K G
Sbjct: 37 GGGAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP--EQEDTS-GNAEQAAKVNAGVMQ----RLQQLSDAP--LDPAKPNR-----TAIAASISRALCFINRAINEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNG 289
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.650e-57 Identity = 114/273 (41.76%), Postives = 159/273 (58.24%), Query Frame = 1
Query: 10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKIKRGK 816
G+ +FQ + +TL+FV SYL++HR N + +A A +S +++P PA + GS N + V++R R A+A SLS+ LC++NR M E ++ R LV+ SPDV E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + + GL QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ A+VC VCLS+FC+F P+C+TCG R+ P K+GK
Sbjct: 34 GNEAADRGNFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHDDTS-----GSAEQSAKVNAV------VMQRLQELSDTPMDCTKPNRT---AIAASLSRALCFINRAMNEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGK 289
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA) HSP 1 Score: 199 bits (505), Expect = 1.100e-56 Identity = 109/270 (40.37%), Postives = 157/270 (58.15%), Query Frame = 1
Query: 10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG 813
G+G + Q + +TL+FV SYL++HR N + +A A +S +++P P E S + + L + ++ P P+ A+A +LS+ LC++NR + E ++ R LV+ SPD+ E Y ++MN IFSAQK V VD C + E S+F+QQAAYLTGG+Y + + GL QY+ + +LP S RK LKL +Q SVDFRA CFCH+ V+ AYVC VCLS+FCEF P+C+TCG R+ + K G
Sbjct: 36 GAGPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPNQEDTSGSAEQAAKVNAGVMQRLQELSDAPLD---------PAKPNR-----TAIAAALSRSLCFINRAINEEPELKP---RILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNG 288 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12605.2155.1 >prot_Ecto-sp13_S_contig12605.2155.1 ID=prot_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp MFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEback to top mRNA from alignment at Ecto-sp13_S_contig12605:450..4077+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12605.2155.1 ID=mRNA_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12605:450..4077+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12605:450..4077+ >mRNA_Ecto-sp13_S_contig12605.2155.1 ID=mRNA_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12605:450..4077+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |