prot_Ecto-sp13_S_contig99025.21547.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig99025.21547.1
Unique Nameprot_Ecto-sp13_S_contig99025.21547.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length56
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99025.21547.1 vs. uniprot
Match: A0A6H5J7D4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7D4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.920e-25
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:    1 MVAPVRETAAQLLAVAALQLEADKLRQVARLLFELTASGEWQARHGGFCSLESLCA 56
            MVAPVRETAAQLLAVAALQLEADKLRQ ARLLFELTASGEWQARHGGFCSLESLCA
Sbjct:    1 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 56
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BLAST of mRNA_Ecto-sp13_S_contig99025.21547.1 vs. uniprot
Match: D8LBB5_ECTSI (Essential abundant protein involved in regulation of transcription n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBB5_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 1.030e-24
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0 
Query:    1 MVAPVRETAAQLLAVAALQLEADKLRQVARLLFELTASGEWQARHGGFCSLESLCA 56
            MVAPVRETAAQLLAVAALQLEADKLRQ ARLLFELTASGEWQARHGGFCSLESLCA
Sbjct:  402 MVAPVRETAAQLLAVAALQLEADKLRQAARLLFELTASGEWQARHGGFCSLESLCA 457
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99025.21547.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7D4_9PHAE8.920e-2598.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBB5_ECTSI1.030e-2498.21Essential abundant protein involved in regulation ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..56
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99025contigEcto-sp13_S_contig99025:43..210 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99025.21547.1mRNA_Ecto-sp13_S_contig99025.21547.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig99025 43..213 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig99025.21547.1 ID=prot_Ecto-sp13_S_contig99025.21547.1|Name=mRNA_Ecto-sp13_S_contig99025.21547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
MVAPVRETAAQLLAVAALQLEADKLRQVARLLFELTASGEWQARHGGFCS
LESLCA
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