mRNA_Ecto-sp13_S_contig12605.2155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12605.2155.1
Unique NamemRNA_Ecto-sp13_S_contig12605.2155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A6H5KQ72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ72_9PHAE)

HSP 1 Score: 538 bits (1387), Expect = 1.670e-189
Identity = 272/285 (95.44%), Postives = 273/285 (95.79%), Query Frame = 1
Query:    1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALTGTTVANGR 855
            QRP SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAA  A  G      DEGCALAGSLSKGLCYVN+KMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKAL GTTVANGR
Sbjct:   36 QRPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAADAAGGG------DEGCALAGSLSKGLCYVNKKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALAGTTVANGR 314          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: D7FYW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW3_ECTSI)

HSP 1 Score: 322 bits (825), Expect = 1.110e-105
Identity = 170/197 (86.29%), Postives = 177/197 (89.85%), Query Frame = 1
Query:    1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGL 591
            +RP SGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQR+LGRGSVSTKEFQ+CLWDGLGRVVERGHAA +A  G      DEGCALAGSLSKGLCY+NRKMRESSSIQA   RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTG    +  G G+
Sbjct:   36 ERPESGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRTLGRGSVSTKEFQDCLWDGLGRVVERGHAADEAGGG------DEGCALAGSLSKGLCYINRKMRESSSIQA---RALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGKGARKTTGTGM 223          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A835ZC01_9STRA (Putative general transcription factor IIH subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC01_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.250e-82
Identity = 133/261 (50.96%), Postives = 183/261 (70.11%), Query Frame = 1
Query:   28 LSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKA--RPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLGESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKI 804
            + +FQ T+EA ++F++SYL+MHRRN++  VAC    S ++FPTPA+E++  SL  G VS+K  Q+C+ DGL R +    A G A  +P + S        +A +LS+ LC+ +RK+ E+ S+Q    R LV+   PD PE+YN+VMN IFSAQKA + VDC  +G  S F+QQAA +TGG+Y   Q   + Q +    LPSQ+CRKYL+ + Q++VDFRAACFCH+R+++IAYVCSVCLSVFCEFSP+C TCGTRA PK +
Sbjct:   32 VGTFQGTLEAMMVFLQSYLLMHRRNDIAVVACGEAGSRMVFPTPAIEKDNVSLATGGVSSKRVQSCIVDGL-RELMSASACGTASVQPAVSSK-----APIAKALSQALCFTHRKITENPSVQT---RLLVVQAGPDAPESYNAVMNCIFSAQKAQIPVDCLCVGPDSVFMQQAADVTGGVYCHVQEPNVLQQLLTLILPSQACRKYLRTKGQETVDFRAACFCHRRLIEIAYVCSVCLSVFCEFSPICATCGTRAVPKLL 283          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: D7FYW4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW4_ECTSI)

HSP 1 Score: 211 bits (538), Expect = 4.600e-64
Identity = 100/103 (97.09%), Postives = 101/103 (98.06%), Query Frame = 1
Query:  550 LTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHKALTGTTVANGRS 858
            L GGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG+HKAL GTTVANGRS
Sbjct:   15 LPGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGRHKALAGTTVANGRS 117          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: K3WG36_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WG36_GLOUD)

HSP 1 Score: 206 bits (524), Expect = 2.630e-59
Identity = 119/272 (43.75%), Postives = 168/272 (61.76%), Query Frame = 1
Query:    1 QRPGSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKR 810
            QR G G     +FQ  V +TL+FV SYL++HR N +  +A  A ++ +++P P          +G  S    Q+   +   +V+++  A  +  P  P+  +    A+A S+S+ LC++NR + E S ++    R LV+  SPDV E Y S+MN IFSAQK GV VD  VL  + S+FLQQAAYLTGG+Y + +   GL QY+ + +LP  S RK LKL +Q SVDFRA CFCHKRV+  A+VC VCLS+FCEF P+C+TCG R+  +  K+
Sbjct:   50 QRSGGGP---QAFQQLVASTLVFVNSYLLLHRSNRIVIIAAHAGKAEMLYPDP---------NQGDTSGSAEQSAKVNA--KVMQKLQALSEL-PVDPA--KPNATAIAASISRALCFINRAINEQSDLRP---RILVIQKSPDVSEHYISIMNGIFSAQKKGVAVDACVLARDQSSFLQQAAYLTGGIYYKPNDHSGLLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKRVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKK 301          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A5D6XQC8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XQC8_9STRA)

HSP 1 Score: 203 bits (516), Expect = 3.470e-58
Identity = 117/268 (43.66%), Postives = 163/268 (60.82%), Query Frame = 1
Query:   31 SSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLY---LEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRGKHK 822
            S+FQ  V +TL+FV +YL++HR N +  VA  A  + +++P      +Q + G    S K   +        V+++  A G A        +    A+A SLS+ LC++NR +RE S ++    R LV+  SPDV + Y S+MN IFSAQK  V VD C +  E S+FLQQAAYLTGG+Y   ++H G  L QY+ + +LP  S RK LKL +Q SVDFRA CFCHK V+  A+VC VCLS+FCEF P+C+TCG R+  +  K+ + K
Sbjct:   53 SAFQQLVASTLVFVNAYLLLHRSNRIVVVAAHAGRAEMLYPDA---EQQDTSGSAEQSAKVNTS--------VLQKLRALGNAPI---DASKPNATAIAASLSRALCFINRAIREQSDLRP---RVLVIQKSPDVAQHYISIMNGIFSAQKKSVAVDACVLASEHSSFLQQAAYLTGGIYYKPIDHSG--LLQYLLSIYLPDPSMRKLLKLPSQDSVDFRAMCFCHKEVISTAFVCPVCLSLFCEFQPICSTCGIRSRIQPAKKLQQK 301          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A8K1C5A8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5A8_PYTOL)

HSP 1 Score: 204 bits (518), Expect = 5.590e-58
Identity = 118/254 (46.46%), Postives = 159/254 (62.60%), Query Frame = 1
Query:   34 SFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVLG-ESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRA 789
            SFQ  + +TL+FV SYL++HR N +  +A  A  S +++P PA   +  + G    S K           RV+E+  A  +  P  PS  +    A+A S+S+ LC++NR + E++ +  SP R LV+  SPDV E Y S+MN IFSAQK  V VD  +L  E S F+QQAAYLTGG+Y + +   GL +Y+ + +LP  S RK LKL TQ SVDFRA CFCH+ VV  AYVC VCLS+FCEF P+C+TCG R+
Sbjct:   95 SFQQLISSTLVFVNSYLLLHRNNRIVIIAAHAGRSEMLYPDPA---QNDTSGTAEQSLKVTN--------RVMEKLKALSEI-PMDPS--KPNATAIAASISRSLCFINRAITENADL--SP-RILVIQKSPDVSEHYISIMNGIFSAQKKNVAVDACILSREHSPFMQQAAYLTGGIYYKPNDHSGLLEYLLSIYLPDPSLRKLLKLPTQDSVDFRAMCFCHQEVVSTAYVCPVCLSLFCEFKPICSTCGIRS 331          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: H3GBC5_PHYRM (Uncharacterized protein n=17 Tax=Phytophthora TaxID=4783 RepID=H3GBC5_PHYRM)

HSP 1 Score: 201 bits (510), Expect = 2.060e-57
Identity = 115/270 (42.59%), Postives = 160/270 (59.26%), Query Frame = 1
Query:   10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLEHQGV-GLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG 813
            G G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P P  E+E  S G    + K     +     R+ +   A     P  P+       A+A S+S+ LC++NR + E   ++    R LV+  SPDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y +  G  GL QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+  +  K G
Sbjct:   37 GGGAADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDP--EQEDTS-GNAEQAAKVNAGVMQ----RLQQLSDAP--LDPAKPNR-----TAIAASISRALCFINRAINEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNGPSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNG 289          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A3M6VU71_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VU71_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.650e-57
Identity = 114/273 (41.76%), Postives = 159/273 (58.24%), Query Frame = 1
Query:   10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAW--PKKIKRGK 816
            G+      +FQ  + +TL+FV SYL++HR N +  +A  A +S +++P PA +        GS       N +      V++R               R    A+A SLS+ LC++NR M E   ++    R LV+  SPDV E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y + +   GL QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  A+VC VCLS+FC+F P+C+TCG R+   P   K+GK
Sbjct:   34 GNEAADRGNFQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPNPAHDDTS-----GSAEQSAKVNAV------VMQRLQELSDTPMDCTKPNRT---AIAASLSRALCFINRAMNEEPDLRP---RILVVQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSMRKLLKLPSQDSVDFRAMCFCHREVISTAFVCPVCLSLFCQFQPICSTCGIRSHIEPMGTKKGK 289          
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Match: A0A421GZV4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GZV4_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.100e-56
Identity = 109/270 (40.37%), Postives = 157/270 (58.15%), Query Frame = 1
Query:   10 GSGEVKLSSFQDTVEATLMFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKEFQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNRKMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVD-CAVLGESSTFLQQAAYLTGGLYLE-HQGVGLAQYMFATFLPSQSCRKYLKLRTQQSVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG 813
            G+G    +  Q  + +TL+FV SYL++HR N +  +A  A +S +++P P  E    S  + +         L +     ++         P  P+       A+A +LS+ LC++NR + E   ++    R LV+  SPD+ E Y ++MN IFSAQK  V VD C +  E S+F+QQAAYLTGG+Y + +   GL QY+ + +LP  S RK LKL +Q SVDFRA CFCH+ V+  AYVC VCLS+FCEF P+C+TCG R+  +  K G
Sbjct:   36 GAGPADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAHAGKSAMLYPDPNQEDTSGSAEQAAKVNAGVMQRLQELSDAPLD---------PAKPNR-----TAIAAALSRSLCFINRAINEEPELKP---RILVIQKSPDMSEHYIAIMNGIFSAQKRSVAVDACILASEQSSFMQQAAYLTGGIYYKPNDHSGLLQYLISIYLPDPSTRKLLKLPSQDSVDFRAMCFCHREVISTAYVCPVCLSLFCEFRPICSTCGIRSHIQPKKNG 288          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12605.2155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQ72_9PHAE1.670e-18995.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYW3_ECTSI1.110e-10586.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC01_9STRA1.250e-8250.96Putative general transcription factor IIH subunit ... [more]
D7FYW4_ECTSI4.600e-6497.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K3WG36_GLOUD2.630e-5943.75Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A5D6XQC8_9STRA3.470e-5843.66Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1C5A8_PYTOL5.590e-5846.46Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
H3GBC5_PHYRM2.060e-5742.59Uncharacterized protein n=17 Tax=Phytophthora TaxI... [more]
A0A3M6VU71_9STRA2.650e-5741.76Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A421GZV4_9STRA1.100e-5640.37Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12605contigEcto-sp13_S_contig12605:450..4077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score287.3
Seed ortholog evalue7.1e-75
Seed eggNOG ortholog2880.D7FYW3
Preferred nameTFB4
Model size1391
KEGG rclassRC00020,RC00041
KEGG koko:K01054,ko:K03143
KEGG ReactionR01351
KEGG Pathwayko00561,ko01100,ko03022,ko03420,ko04714,ko04723,ko04923,ko05203,map00561,map01100,map03022,map03420,map04714,map04723,map04923,map05203
KEGG ModuleM00098,M00290
Hectar predicted targeting categoryother localisation
GOsGO:0000109,GO:0000112,GO:0000428,GO:0000439,GO:0000988,GO:0000990,GO:0000991,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005675,GO:0006139,GO:0006259,GO:0006281,GO:0006289,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006412,GO:0006464,GO:0006468,GO:0006518,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0016310,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032774,GO:0032806,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0036211,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070816,GO:0071704,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1902554,GO:1902911,GO:1903506,GO:1990234,GO:1990391,GO:2000112,GO:2001141
Exons6
EggNOG free text desc.phosphorylation of RNA polymerase II C-terminal domain
EggNOG OGsCOG5242@1,KOG2487@2759
Ec32 ortholog descriptionTFIIH subunit Tfb4/p34
Ec32 orthologEc-19_002710.1
EC3.1.1.23
Cds size798
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03021,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12605.2155.1prot_Ecto-sp13_S_contig12605.2155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12605 513..3547 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.791077-UTR-Ecto-sp13_S_contig12605:449..5121681462672.791077-UTR-Ecto-sp13_S_contig12605:449..512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12605 450..512 +
1681462672.8648422-UTR-Ecto-sp13_S_contig12605:3547..40771681462672.8648422-UTR-Ecto-sp13_S_contig12605:3547..4077Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12605 3548..4077 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.8065264-CDS-Ecto-sp13_S_contig12605:512..5861681462672.8065264-CDS-Ecto-sp13_S_contig12605:512..586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 513..586 +
1681462672.8159504-CDS-Ecto-sp13_S_contig12605:725..8921681462672.8159504-CDS-Ecto-sp13_S_contig12605:725..892Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 726..892 +
1681462672.8254046-CDS-Ecto-sp13_S_contig12605:1498..15931681462672.8254046-CDS-Ecto-sp13_S_contig12605:1498..1593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 1499..1593 +
1681462672.8350585-CDS-Ecto-sp13_S_contig12605:2126..22831681462672.8350585-CDS-Ecto-sp13_S_contig12605:2126..2283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 2127..2283 +
1681462672.8442872-CDS-Ecto-sp13_S_contig12605:2843..30091681462672.8442872-CDS-Ecto-sp13_S_contig12605:2843..3009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 2844..3009 +
1681462672.8565767-CDS-Ecto-sp13_S_contig12605:3408..35471681462672.8565767-CDS-Ecto-sp13_S_contig12605:3408..3547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12605 3409..3547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12605.2155.1

>prot_Ecto-sp13_S_contig12605.2155.1 ID=prot_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=266bp
MFVESYLMMHRRNEVCFVACTARESTIIFPTPAMEREQRSLGRGSVSTKE
FQNCLWDGLGRVVERGHAAGKARPGLPSMGRDEGCALAGSLSKGLCYVNR
KMRESSSIQASPARALVLSGSPDVPETYNSVMNAIFSAQKAGVLVDCAVL
GESSTFLQQAAYLTGGLYLEHQGVGLAQYMFATFLPSQSCRKYLKLRTQQ
SVDFRAACFCHKRVVDIAYVCSVCLSVFCEFSPVCTTCGTRAWPKKIKRG
KHKALTGTTVANGRS*
back to top

mRNA from alignment at Ecto-sp13_S_contig12605:450..4077+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12605.2155.1 ID=mRNA_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12605:450..4077+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGCGACCGGGGTCAGGCGAGGTGAAGCTGTCGTCCTTCCAAGACACGGT GGAGGCTACTCTCATGTTCGTTGAGAGCTACCTCATGATGCACAGACGAA ACGAGGTGTGCTTCGTCGCCTGCACGGCACGGGAAAGGTGATCTTTGTGC TTTCAGCAGCAACGGGGATTACCGCAGATGTTGTAGCGAGGACCATTTGT CTGACCTCCATATTCGTGCAGCCCTCAAGGCGTTTGTGTTCAAACATCTT CCACGTCTATCTCGTGTGCGACTCAGCACCATCATCTTCCCTACCCCTGC CATGGAGCGGGAGCAGCGATCGCTTGGGAGGGGTTCTGTGAGCACCAAGG AGTTCCAGAACTGCCTGTGGGATGGGCTAGGCCGAGTAGTCGAGAGGGGT CACGCGGCAGGTAAGGCAAGACCAGGCCTCCCGTCGATGGGAAGTCCACA TGAAATGATGTGTGCGTCCAAACCCCCAATGTCTCCCTCACCCAACAATA GGTACGCAAAACACATTGGCAGCTTATCATTTAGTCTCCTGTCTCCAAAT GAAAACAGCCATTTATTCGGTGACGTCTTCCACGGAATTGGAGATCCCCT GCGATTGGACATTACTAATAAGTAGATAAGACGCCACCAAGGTTAAGGGT GTACCTGTGTGCGCCTGTTAGTTGGTTAGTTGGTTTGCTCGACATCACTG CACGATACCGCTTTAGAGGCTACCATTGCTTCCAGAGATACCGCTTATTC TCCTGTTGTGGGAGGGAAAATATCCTTCCTGGTCTTTTGTATACAACTGT CCATTGGTGCAACGCTAGCAAAGCCGGATTATCAGCTTCGATTTAGGTGT TTTGGTGGACGTAGTTACAGTCGGTGGCCTGGCTTTGTGTCCCAATCGTT CGCGATCAGTTGTAAACAATCGACGCCCAATCTCCTCCTCTTGTCCCCTG TGGGATTTCGCCCTCGCCCTACTGTCGCTGAGAATGCTCGGCCTTCCCTT CCGTTCTTCTTGGTTTTCGATTTCCCTCCTGAACACGCGGCGGGCGGAGG GGACGAGGGGTGCGCTCTGGCGGGAAGCCTGTCGAAGGGCCTGTGCTACG TTAACAGAAAAATGCGCGAGTCCTCGTCGATCCAGGCAAGTCCAGTGCGT TGATGTCGAGGACGCCGCGGGCGGCGTCGGGTCATTGACTTGTGTGTTTT TCCTCCTCGTTGCTGCTGGAACCGCAGGAGCTACTGCCGCTGCTGCCGCC GCTCATGTTTCGCCGGATCAAGCGCATCTAATTTCGTTTGTCCGGAAGGT CGACGGCCTTGAAACCCGGCGCGCATGAGAAACAGCCTGAAGCACAAGTG CGACCTAAAGGGCCGTACGATTTTTCGGCTTTGCATTCTTCTGGCGCCTG CTGGTCCCAAAGTCCCGACGCAATTTGGTCGAGATTCTGTCTCTCTCTCT CGTTGCACAAGGATATCAACAGGGGCCACCTGCAATGTTTTTTGCGCCCA AGAGGCTGGGTGGGATTGCTGACGTCAACTTTCGGCAGTATCACATAGCT GATGCACTGGAGTCATGTCTGAAAGAAGGCTAATTCCGCCGTACCCTTTG AGCGACCGCTTACTCCACCATCCCATCCGCCCATTCCCCCCGCCCCCGCT TTTGGTTCCGGAAACAATGAACCACAGGCGCGGGCTTTGGTCCTGTCGGG ATCACCGGACGTTCCGGAGACGTACAATTCGGTCATGAACGCGATCTTCT CGGCGCAGAAGGCCGGGGTCCTCGTGGACTGCGCCGTACTAGGAGAGTCG TCCACATTCCTTCAGCAAGCGGCCTACCTCACGGGTGAGGGGGGGAGAAA ACCAACAGGCACAGCCCTGTAGTACTTGACATGTTCAAGGGGTAGGTTGA GTTGAGAATTGGAGCTTGGCCGTGCATATGTCACAGATCTATGGCCAACT TCTTTTTCTGATACCGTGAGTTTCGATCCTTCTTTCGTTGAGGCCATGTT CGGGTGGAATTTTCTCTCATTTGTGTCGTGCTTGTTCTCGAGAGCGTTTG GACTGCTCCAGATCTGCGAACATTATTCTTTTTGCGCTGGCGTCGAACGA CTTGCAAATCTGCCCGGCGGACCCGTCAATGGTAAGAGGCCAGACGCTTT CGAAAAGTTTCCGTGATTTGTGCAGATACGATGAGATATGGAGTTATGAT GGCGTAAAACACGCCTACTGACCGCGTAGAAACATGATGCCCCTCCATTC CAGTGCGTTGTGACCTGTGAGATGCCCCTCCGTCGACGGGTGTGCGAATG TTCCTGTGGATAATAAGCCCTCTTCTTCCCCCAATTGTCGCGCAATGGAC GGTTTGGAACGCTATCATTGTTGCCGTTTTTCGTGTTTTACCAGGCGGGC TATACCTGGAACACCAAGGAGTGGGCCTCGCGCAGTATATGTTTGCCACG TTCTTACCGAGTCAGAGCTGCCGCAAATACCTCAAGCTTCGCACGCAGCA GAGCGTAGACTTCAGGGCGGCGTGCTTCTGCCACAAGCGCGTCGTGGACA TCGCTTACGTGTGAGAGCAGACTACCTTATGCTAGCAATTTCGCCGACTC CCTGTTTCTGTTTTGGTTTCAGGGACACCGTGCGACCCGTGGTTTTCAGC GCCCATGCTGTTCTTGAGTGTTGAAATGTTATCGAAACTAGTGGTGTCCT CCTTCGCTATACACCCGTTCCAATGTAGAAGAGTGTGTTCTTTGTGGTCT CTGCGGGTGCAAGCTTGTGGCATTCGCGATACGTCGATGTTTGCACAGGA GAAGCTCGGAATATGTCCTTTACGGCGGGGTGTGCATTGCTACATATGGG GTACGTGCGGTTCTAGACGTTCCACTCTCCCCATGACGCCTGTGTCCATC CTCTGCCATCTGTTTGCTCTTGTTCGCTCGTGTGTGGTTTTGTGGCCAAT TCTTCGCAGGTGCTCGGTATGCCTGTCGGTGTTTTGTGAATTCTCGCCAG TGTGCACGACGTGTGGCACGCGAGCTTGGCCGAAGAAGATCAAGCGGGGC AAGCACAAGGCTCTTACAGGGACGACCGTTGCAAATGGTCGTTCATGAGA GCGTCGAGCACACCAGGAACGAGCAAGGATGTCCACAAGCACATCTCAGA CTGCTTTGTTACTGGTTGAGGATTCCGCTGAATTGGTTCGCCAAGGTTGA ATTTCTACATGCATCTGTACATGATATTTCGCGTTTCATCAGGCTCGATG TTTCTGTACTCATGTAGTGGCGAGCGGCCGATTTACGTAATTTTCTCAAG GTGTGGCACAGCCTGGAGCGTTTTTTCCAAAAGCTCGATTTCTCCGCGAC GAGGAAAATGCCAATACCAACCCGTATGAATGTCTCTCGACGAGATTGTT CCAACGCCGCCGTTCGGGTCGCCATCGTTCTCGGCACCATCACTGCCATG GTTACAGAGTAATCAAACTTCGCGAAACCTGTCCAAGGGGAATCAATATA TACGACGTGCGGCATTTGGGTGTTTGCAGGCAACGGATACGGCGTAGTTG TACATTCATGATCGCACGTCACGTGAGTTGCTTTGGCTGTGGGCTTGGGC ATCGTCCAATAAGCTCCTGAACGCCGTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12605:450..4077+

>mRNA_Ecto-sp13_S_contig12605.2155.1 ID=mRNA_Ecto-sp13_S_contig12605.2155.1|Name=mRNA_Ecto-sp13_S_contig12605.2155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12605:450..4077+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGTTGAGAGCTACCTCATGATGCACAGACGAAACGAGGTGTGCTT
CGTCGCCTGCACGGCACGGGAAAGCACCATCATCTTCCCTACCCCTGCCA
TGGAGCGGGAGCAGCGATCGCTTGGGAGGGGTTCTGTGAGCACCAAGGAG
TTCCAGAACTGCCTGTGGGATGGGCTAGGCCGAGTAGTCGAGAGGGGTCA
CGCGGCAGGTAAGGCAAGACCAGGCCTCCCGTCGATGGGAAGGGACGAGG
GGTGCGCTCTGGCGGGAAGCCTGTCGAAGGGCCTGTGCTACGTTAACAGA
AAAATGCGCGAGTCCTCGTCGATCCAGGCAAGTCCAGCGCGGGCTTTGGT
CCTGTCGGGATCACCGGACGTTCCGGAGACGTACAATTCGGTCATGAACG
CGATCTTCTCGGCGCAGAAGGCCGGGGTCCTCGTGGACTGCGCCGTACTA
GGAGAGTCGTCCACATTCCTTCAGCAAGCGGCCTACCTCACGGGCGGGCT
ATACCTGGAACACCAAGGAGTGGGCCTCGCGCAGTATATGTTTGCCACGT
TCTTACCGAGTCAGAGCTGCCGCAAATACCTCAAGCTTCGCACGCAGCAG
AGCGTAGACTTCAGGGCGGCGTGCTTCTGCCACAAGCGCGTCGTGGACAT
CGCTTACGTGTGCTCGGTATGCCTGTCGGTGTTTTGTGAATTCTCGCCAG
TGTGCACGACGTGTGGCACGCGAGCTTGGCCGAAGAAGATCAAGCGGGGC
AAGCACAAGGCTCTTACAGGGACGACCGTTGCAAATGGTCGTTCATGA
back to top