mRNA_Ecto-sp13_S_contig99.21543.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99.21543.1
Unique NamemRNA_Ecto-sp13_S_contig99.21543.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Match: D7FH80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH80_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 6.440e-18
Identity = 43/68 (63.24%), Postives = 51/68 (75.00%), Query Frame = 3 
Query:  201 SPPTPDEWG-LVAIGDATKLAELVLVWSGSIAEQAHSLLTRCISLLEKEVAFSAPASSPLQWPPTSLG 401
            S   PDEWG  VA GDATKLAELVL+WSG   E+A S++  C+S+LEKEVA S P SSPL+  PT+LG
Sbjct:    8 SSARPDEWGPAVASGDATKLAELVLLWSGLKPERALSVIRDCVSVLEKEVALSTPGSSPLRATPTTLG 75
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BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Match: A0A6H5KPY7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY7_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 2.210e-16
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 3 
Query:  210 TPDEWGL-VAIGDATKLAELVLVWSGSIAEQAHSLLTRCISLLEKEVAFSAPASSPLQWPPTSLG 401
            +PD+WGL VA GDATKLAELVLVWSGS  E A SLL  C+ LLE+E AFS P SSPLQ P  +LG
Sbjct:   66 SPDKWGLAVATGDATKLAELVLVWSGSRPEAALSLLRECVLLLEEEAAFSVPDSSPLQSPSCTLG 130
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BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Match: D7FTA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTA8_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 5.400e-15
Identity = 40/64 (62.50%), Postives = 46/64 (71.88%), Query Frame = 3 
Query:  213 PDEWG-LVAIGDATKLAELVLVWSGSIAEQAHSLLTRCISLLEKEVAFSAPASSPLQWPPTSLG 401
            PD WG  VA GDAT LAELVL+W G +   A S+L RC+++LEKEVA SAP SSPL  P TS G
Sbjct:   12 PDAWGSAVASGDATGLAELVLLWCGVLPHPALSILRRCVAVLEKEVALSAPTSSPLPSPQTSRG 75
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BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Match: D7G2S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 1.520e-10
Identity = 50/129 (38.76%), Postives = 57/129 (44.19%), Query Frame = 3 
Query:   15 VIHQVSWRETSVQEPQGLINGLRS*RAATR*SLPSWCFFRRVQVCASLLETKLAFSTPAFSQSPPTPDEWGLVAIGDATKLAELVLVWSGSIAEQAHSLLTRCISLLEKEVAFSAPASSPLQWPPTSLG 401
            V H+ S RETSV+ PQGL+NG R  RAATR                                                  LA+LVLVWSGS  E A S+L  C+SLLEKE AFSAPA   +   PT  G
Sbjct:   29 VEHRTSCRETSVRVPQGLMNGARPWRAATR--------------------------------------------------LAQLVLVWSGSEPEPALSILKDCVSLLEKEFAFSAPAFPAVPLLPTMPG 107
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BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Match: D7FUL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUL5_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 2.340e-8
Identity = 44/97 (45.36%), Postives = 50/97 (51.55%), Query Frame = 3 
Query:  231 VAIGDATKLAELVLVWSGSIAEQAHSLLTRCISLLEKEVAFSAPASSPLQWPPTSLG--------------EFLCDG*SYWNNQHHEVQETPKVLFC 479
            VA G ATKLAELVLVWS S  E+A S+   C+SLLEKE A SA  SSPL    T+ G                 CDG S W     E+Q    + FC
Sbjct:   74 VASGAATKLAELVLVWSVSKPERALSIARTCVSLLEKEDAHSASGSSPLXXXSTAPGPGRSSCLNAIVVALSETCDGKS-WYTSTKELQ-LASLGFC 168
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99.21543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH80_ECTSI6.440e-1863.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KPY7_9PHAE2.210e-1669.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTA8_ECTSI5.400e-1562.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G2S9_ECTSI1.520e-1038.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUL5_ECTSI2.340e-845.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99contigEcto-sp13_S_contig99:32100..33909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size489
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_004120.1
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.0282445-UTR-Ecto-sp13_S_contig99:32099..323711681464251.0282445-UTR-Ecto-sp13_S_contig99:32099..32371Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig99 32100..32371 -
1681464251.068646-UTR-Ecto-sp13_S_contig99:33878..339091681464251.068646-UTR-Ecto-sp13_S_contig99:33878..33909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig99 33879..33909 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464251.0382528-CDS-Ecto-sp13_S_contig99:32371..323721681464251.0382528-CDS-Ecto-sp13_S_contig99:32371..32372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 32372..32372 -
1681464251.0478404-CDS-Ecto-sp13_S_contig99:32820..329681681464251.0478404-CDS-Ecto-sp13_S_contig99:32820..32968Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 32821..32968 -
1681464251.0580738-CDS-Ecto-sp13_S_contig99:33841..338781681464251.0580738-CDS-Ecto-sp13_S_contig99:33841..33878Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 33842..33878 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99.21543.1prot_Ecto-sp13_S_contig99.21543.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99 32372..33878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99.21543.1

>prot_Ecto-sp13_S_contig99.21543.1 ID=prot_Ecto-sp13_S_contig99.21543.1|Name=mRNA_Ecto-sp13_S_contig99.21543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MERDIGSGTARPDKWASVVTSGDAVKLAELVLLSSGSSLRLFAGDEACIF
NPGFFSVAPDT*
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mRNA from alignment at Ecto-sp13_S_contig99:32100..33909-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99.21543.1 ID=mRNA_Ecto-sp13_S_contig99.21543.1|Name=mRNA_Ecto-sp13_S_contig99.21543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:32100..33909- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCTGATCAGGAGTGATACACCAAGTATCATGGAGAGAGACATCGGTT
CAGGAACCGCAAGGCCTGGTGAGTAAAGAGCTACGATATATTGAAATTGG
TGCAGATGTCATGCTGTTCTTCTTGCTCTCACTCACGCAGAAAGGATGCC
GGCCTCAGAAGTGCCGTAGCTGTTTGAAATTTCGTCACTTGTTCCCTTTG
ACATTTGTGAGTTTCTGATTTGATGAGGAGTGACGGTTGGAGGTGCGCAA
TCGCGGGGTGATAAAGTATTCAATAGCTGGACAATTTTCTGACCGGCTCC
AGCTTGCCCCGAATGCTGATCCATCGGTAGATGCTGTGGTGTGCATTTTC
GCCCCTAAATCCCCATATCAAAACACGATCTGACTGGGCAGGCGTTTGTG
CTTCCTCAATAAGTCGGACGCGACTCCTGGTGGATCATTTTTTATATCCA
GCTACAGCAGTGTCTGATACCGAGCCTTGCAGTTAGTGCTGCGGTTAGTG
CTGTGACGCGCCGTCCATATTTTTGTTGCTTTGAGGGATGCGTTCGGCAA
TGTTGCCTTCGGTAGTATACCACAGCTGACAGCTCTACCACCAGCATTAT
GGGGTATGTTCGTGAATGGGAAGATAAGCCATGAGCGTCAAGGCGATTTT
CTCGGAGAAACTAGCAGCACATGCAAACCATGAAATTGATTTATTTGGCA
GTTTTATCTTATGGCAATGAGACAAGTGTCTGAACGCGTAAGTCCTAGTG
GTGTGACGAAGCTGGTCCTCTGGACCATGGGAAATATTACATTTTGTTTT
CACCTCTTTCAATGGAGATTGCTGTATTCGCAAGTGGGGAGAATGGTCAA
TATCCAACTTTTTTTCTCAGCCTGTAAGCAGCCAATCCTACCCCAGCAAT
TGATTACCTTTGACAACACCGTCGAATTGATGGTTCCGCAGATAAATGGG
CTTCGGTCGTGACGAGCGGCGACGCGGTGAAGCTTGCCGAGCTGGTGCTT
CTTTCGTCGGGTTCAAGTCTGCGCCTCTTTGCTGGAGACGAAGCTTGCAT
TTTCAACCCCGGCTTTTTCTCAGTCGCCCCCGACACCTGGTGCGTTCGTT
TTTGCCTTTTGCAGGTCTTGAATTCGCGTACGCTGTCACGGGCTTTAGGA
GACGCCACGGGGCTTGCCCGGTGGCTGAGAACTGTTTCGTGTTGCTTTGT
AGGAATGAGACGTTCAGACGTTTAGTTAAGACGTAACGCCGGTGTTGAAT
GGAGACAACATCTTGTCATTTATCCCTTTGGCGGTTTCGCCCCAGTGTTG
GACGGGCGTTCCAAACTGTCGCAAGATTATTTAGATGCCGCCCGATTTTA
GAGATCACCACTGCGTATTAGTTCTGTGGCGAAGCATGGGCGGTTACAAC
GAAATATTTGTCTCTGAATCGCTTTCGAGGTATTCGTAATTGATGAGAGG
GTTCGTGTCCAACCTTGATGTCAGGCTACGACCGATACGAAACCACCACG
TACGTTTGACACCACCGGCCAATTGACGATTCCGCAGATGAATGGGGCTT
GGTGGCGATCGGCGACGCGACCAAGCTAGCCGAGCTGGTGCTGGTTTGGA
GCGGTTCAATAGCCGAGCAGGCTCATTCCCTTCTGACGAGATGTATTTCT
TTGCTGGAGAAGGAAGTTGCGTTTTCAGCTCCGGCTTCTTCTCCTCTTCA
ATGGCCCCCTACTTCACTTGGTGAGTTCCTCTGTGACGGCTGAAGTTATT
GGAACAACCAGCATCATGAAGTTCAAGAGACGCCGAAAGTTTTGTTCTGT
TGGCTGGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99:32100..33909-

>mRNA_Ecto-sp13_S_contig99.21543.1 ID=mRNA_Ecto-sp13_S_contig99.21543.1|Name=mRNA_Ecto-sp13_S_contig99.21543.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:32100..33909- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAGAGACATCGGTTCAGGAACCGCAAGGCCTGATAAATGGGCTTC
GGTCGTGACGAGCGGCGACGCGGTGAAGCTTGCCGAGCTGGTGCTTCTTT
CGTCGGGTTCAAGTCTGCGCCTCTTTGCTGGAGACGAAGCTTGCATTTTC
AACCCCGGCTTTTTCTCAGTCGCCCCCGACACCTGA
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