mRNA_Ecto-sp13_S_contig99.21540.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99.21540.1
Unique NamemRNA_Ecto-sp13_S_contig99.21540.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: D1J7B0_ECTSI (Uncharacterized protein Escp152 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D1J7B0_ECTSI)

HSP 1 Score: 76.3 bits (186), Expect = 3.830e-15
Identity = 38/40 (95.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP 120
            LVEKSIIPVFSNLEDAQNLLITVLEEVN+PFQ RRKMEGP
Sbjct:  288 LVEKSIIPVFSNLEDAQNLLITVLEEVNKPFQARRKMEGP 327          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A344PFC3_9PHAE (Uncharacterized protein n=1 Tax=Endarachne binghamiae TaxID=698476 RepID=A0A344PFC3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 5.030e-12
Identity = 31/39 (79.49%), Postives = 38/39 (97.44%), Query Frame = 1
Query:    4 VEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP 120
            ++K+IIP+FSNLEDAQ+LLITVLEEVN+PFQVRRK+E P
Sbjct:  281 IDKNIIPIFSNLEDAQDLLITVLEEVNQPFQVRRKVEKP 319          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A7T8G5F4_SCYLO (Uncharacterized protein n=2 Tax=Scytosiphon TaxID=27966 RepID=A0A7T8G5F4_SCYLO)

HSP 1 Score: 64.7 bits (156), Expect = 4.480e-11
Identity = 29/39 (74.36%), Postives = 37/39 (94.87%), Query Frame = 1
Query:    4 VEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP 120
            ++K+IIP+FS LEDAQ+LLITVLEE+N+PFQVRRK+E P
Sbjct:  281 IDKNIIPIFSKLEDAQDLLITVLEEINQPFQVRRKVEKP 319          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A1I9LVA6_9PHAE (Uncharacterized protein n=2 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVA6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.130e-10
Identity = 29/39 (74.36%), Postives = 36/39 (92.31%), Query Frame = 1
Query:    4 VEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP 120
            V+K++IPVFSNLEDAQ+LLIT LEE+N+PFQV RK+E P
Sbjct:  294 VDKNLIPVFSNLEDAQDLLITTLEEINQPFQVLRKVETP 332          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A5A4MIP9_9PHAE (Uncharacterized protein n=1 Tax=Hapterophycus canaliculatus TaxID=2567908 RepID=A0A5A4MIP9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 2.130e-10
Identity = 28/37 (75.68%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    4 VEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKME 114
            ++K+IIP+FSN+EDAQ+LLIT+LEEVN+PFQVRRK+E
Sbjct:  279 IDKNIIPIFSNVEDAQDLLITLLEEVNQPFQVRRKVE 315          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A6B7EYX5_9PHAE (Uncharacterized protein n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EYX5_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 3.980e-10
Identity = 28/37 (75.68%), Postives = 37/37 (100.00%), Query Frame = 1
Query:    4 VEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKME 114
            V+K+IIPVFS+LEDAQ+LLIT+L+E+N+PFQVRRK+E
Sbjct:  357 VDKNIIPVFSSLEDAQDLLITILDEINQPFQVRRKIE 393          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A8F0JY34_9PHAE (Uncharacterized protein n=1 Tax=Pseudochorda nagaii TaxID=74379 RepID=A0A8F0JY34_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.890e-7
Identity = 25/39 (64.10%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEG 117
            L+ K+IIPVFS+LEDAQ+LL+TVLEE+ EP+Q+ R++E 
Sbjct:  302 LLSKNIIPVFSSLEDAQDLLLTVLEEILEPYQLLREIES 340          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A0R6M0B1_UNDPI (Uncharacterized protein n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A0R6M0B1_UNDPI)

HSP 1 Score: 53.1 bits (126), Expect = 5.320e-7
Identity = 26/40 (65.00%), Postives = 33/40 (82.50%), Query Frame = 1
Query:    1 LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP 120
            L+ K+IIP+FSNLEDAQ+LLI VLEE+ EPF+  R +E P
Sbjct:  309 LLSKNIIPIFSNLEDAQDLLIVVLEELLEPFKTIRFIENP 348          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A8F0JZY5_9PHAE (Uncharacterized protein n=1 Tax=Egregia menziesii TaxID=105409 RepID=A0A8F0JZY5_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 7.270e-7
Identity = 27/39 (69.23%), Postives = 33/39 (84.62%), Query Frame = 1
Query:    1 LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEG 117
            LV K+IIPVFSNLE+AQ+LLITVLEE+ EPF+  R +E 
Sbjct:  309 LVSKNIIPVFSNLEEAQDLLITVLEELLEPFKKIRSIEN 347          
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Match: A0A8F0F6Z1_AKKLU (Uncharacterized protein n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F6Z1_AKKLU)

HSP 1 Score: 52.0 bits (123), Expect = 1.360e-6
Identity = 24/39 (61.54%), Postives = 35/39 (89.74%), Query Frame = 1
Query:    1 LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEG 117
            L+ K+IIPVFS+L+DAQ+LL+TVLEE+ EP+Q+ R++E 
Sbjct:  314 LLSKNIIPVFSSLDDAQDLLLTVLEEILEPYQLIREIES 352          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99.21540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D1J7B0_ECTSI3.830e-1595.00Uncharacterized protein Escp152 n=2 Tax=Ectocarpus... [more]
A0A344PFC3_9PHAE5.030e-1279.49Uncharacterized protein n=1 Tax=Endarachne bingham... [more]
A0A7T8G5F4_SCYLO4.480e-1174.36Uncharacterized protein n=2 Tax=Scytosiphon TaxID=... [more]
A0A1I9LVA6_9PHAE2.130e-1074.36Uncharacterized protein n=2 Tax=Pleurocladia lacus... [more]
A0A5A4MIP9_9PHAE2.130e-1075.68Uncharacterized protein n=1 Tax=Hapterophycus cana... [more]
A0A6B7EYX5_9PHAE3.980e-1075.68Uncharacterized protein n=1 Tax=Cladosiphon okamur... [more]
A0A8F0JY34_9PHAE3.890e-764.10Uncharacterized protein n=1 Tax=Pseudochorda nagai... [more]
A0A0R6M0B1_UNDPI5.320e-765.00Uncharacterized protein n=1 Tax=Undaria pinnatifid... [more]
A0A8F0JZY5_9PHAE7.270e-769.23Uncharacterized protein n=1 Tax=Egregia menziesii ... [more]
A0A8F0F6Z1_AKKLU1.360e-661.54Uncharacterized protein n=1 Tax=Akkesiphycus lubri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99contigEcto-sp13_S_contig99:163..282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size120
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size120
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.93945-CDS-Ecto-sp13_S_contig99:162..2821681464250.93945-CDS-Ecto-sp13_S_contig99:162..282Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99 163..282 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99.21540.1prot_Ecto-sp13_S_contig99.21540.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99 163..282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99.21540.1

>prot_Ecto-sp13_S_contig99.21540.1 ID=prot_Ecto-sp13_S_contig99.21540.1|Name=mRNA_Ecto-sp13_S_contig99.21540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
LVEKSIIPVFSNLEDAQNLLITVLEEVNEPFQVRRKMEGP
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mRNA from alignment at Ecto-sp13_S_contig99:163..282+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99.21540.1 ID=mRNA_Ecto-sp13_S_contig99.21540.1|Name=mRNA_Ecto-sp13_S_contig99.21540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:163..282+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGTAGAAAAAAGTATTATTCCAGTTTTTTCTAATTTAGAAGATGCTCA AAATCTTTTAATAACAGTCCTAGAAGAAGTAAATGAACCTTTTCAAGTCA GAAGAAAAATGGAAGGACCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99:163..282+

>mRNA_Ecto-sp13_S_contig99.21540.1 ID=mRNA_Ecto-sp13_S_contig99.21540.1|Name=mRNA_Ecto-sp13_S_contig99.21540.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99:163..282+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTAGTAGAAAAAAGTATTATTCCAGTTTTTTCTAATTTAGAAGATGCTCA
AAATCTTTTAATAACAGTCCTAGAAGAAGTAAATGAACCTTTTCAAGTCA
GAAGAAAAATGGAAGGACCT
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