mRNA_Ecto-sp13_S_contig12604.2154.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12604.2154.1
Unique NamemRNA_Ecto-sp13_S_contig12604.2154.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A1S3HJ93_LINUN (protein ecdysoneless homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HJ93_LINUN)

HSP 1 Score: 65.1 bits (157), Expect = 2.060e-9
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 2 
Query:  245 ACCSNGPLLVPGEDDEQDNNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFPSIP 454
            A  ++ P +   EDD+  +N D   DD+KPV+VDM +VK+LL+S   Q GL+GPASN+L +MG+  P+ P
Sbjct:  564 ASTTSKPTMAEMEDDDDIDNLD--DDDFKPVNVDMTVVKNLLQSYAEQQGLAGPASNILETMGVKVPNQP 631
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A183I9P3_9BILA (Uncharacterized protein n=2 Tax=Soboliphyme baturini TaxID=241478 RepID=A0A183I9P3_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 5.950e-9
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 2 
Query:  299 NNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFPSIP 454
            N+ D   DD+KPVD+D NLV ++L+S  S+ G+ GPAS+LLRS+ +N P IP
Sbjct:   73 NSIDQEDDDFKPVDIDRNLVSNMLQSYWSEKGMGGPASSLLRSLNVNPPMIP 124
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: UPI001403BD85 (protein ecdysoneless homolog isoform X1 n=2 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403BD85)

HSP 1 Score: 62.8 bits (151), Expect = 1.330e-8
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:  275 PGEDDEQDNN----ADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            PG+  +  +N    + V  DD +PVDVD+NLVK+LLES  SQ GL+GPAS LL SMGL  P
Sbjct:  634 PGDHRDASDNPRAASSVGADDLRPVDVDLNLVKNLLESFSSQDGLAGPASTLLHSMGLRLP 694
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A443RQW3_9ACAR (Protein SGT1-like isoform X2 n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A443RQW3_9ACAR)

HSP 1 Score: 62.4 bits (150), Expect = 1.770e-8
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  263 PLLVPGEDDEQDNNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            P L   EDD  D+       DY PVDVD+N +K++LES  SQGGL GPASN+L SMG++ P
Sbjct:  548 PPLAVVEDDSDDS-------DYTPVDVDLNALKNILESYQSQGGLPGPASNILSSMGVHLP 601
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A1W0WI18_HYPDU (Protein ecdysoneless-like protein n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WI18_HYPDU)

HSP 1 Score: 62.0 bits (149), Expect = 2.450e-8
Identity = 28/52 (53.85%), Postives = 41/52 (78.85%), Query Frame = 2 
Query:  290 EQDNNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            E D+  D   DDY+PVDV++NL+K++LES  S+ G++GPASN+L+ MG+N P
Sbjct:  619 ESDSFEDDEEDDYRPVDVNINLLKNILESCSSEQGMAGPASNMLKRMGVNVP 670
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A2Z6M695_TRISU (Uncharacterized protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6M695_TRISU)

HSP 1 Score: 59.3 bits (142), Expect = 3.250e-8
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  272 VPGEDDEQDNNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            VP +D+   + A+   +D+ P+DVD+NL+K LL+S  SQ GL GPASNLL  MG+ FP
Sbjct:   91 VPKKDEGTSHAAEDMDNDFSPIDVDVNLLKSLLDSFSSQQGLPGPASNLLGLMGVQFP 148
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A1Y1Y4C3_9FUNG (SGT1-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y4C3_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 3.280e-8
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 2 
Query:  320 DDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            DD+KPVDVD NLV++LLES  SQ GL GP  N+L SMGLN P
Sbjct:  573 DDFKPVDVDFNLVQNLLESFKSQQGLPGPVGNILNSMGLNLP 614
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: A0A7S2W6K0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6K0_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.610e-8
Identity = 27/45 (60.00%), Postives = 35/45 (77.78%), Query Frame = 2 
Query:  320 DDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFPSIP 454
            D+  PVDVD NL+ HLLES  SQ G++GPA+N+LR MG+ FP +P
Sbjct:  254 DEVAPVDVDRNLLTHLLESFASQDGVAGPAANILREMGVFFPVVP 298
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: G7JWE1_MEDTR (Putative Ecd family protein n=1 Tax=Medicago truncatula TaxID=3880 RepID=G7JWE1_MEDTR)

HSP 1 Score: 60.8 bits (146), Expect = 6.090e-8
Identity = 31/58 (53.45%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:  272 VPGEDDEQDNNADVPTDDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            +P +D+   + A+   +D+ PVDVD+NLVK LL+S  SQ GL GPASNLL  MG+ FP
Sbjct:  567 IPKKDEGTSHAAEDMDEDFSPVDVDVNLVKSLLDSFSSQQGLPGPASNLLGLMGVQFP 624
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BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Match: UPI001BB11FB7 (protein ecdysoneless homolog n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB11FB7)

HSP 1 Score: 60.5 bits (145), Expect = 8.390e-8
Identity = 27/42 (64.29%), Postives = 37/42 (88.10%), Query Frame = 2 
Query:  320 DDYKPVDVDMNLVKHLLESTVSQGGLSGPASNLLRSMGLNFP 445
            D+YKPV+VD+NL+K++LES  SQ GL+GPASN+L SMG++ P
Sbjct:  633 DEYKPVEVDVNLLKNILESYSSQQGLAGPASNILHSMGVHVP 674
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12604.2154.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3HJ93_LINUN2.060e-947.14protein ecdysoneless homolog n=1 Tax=Lingula ungui... [more]
A0A183I9P3_9BILA5.950e-953.85Uncharacterized protein n=2 Tax=Soboliphyme baturi... [more]
UPI001403BD851.330e-855.74protein ecdysoneless homolog isoform X1 n=2 Tax=Pe... [more]
A0A443RQW3_9ACAR1.770e-854.10Protein SGT1-like isoform X2 n=1 Tax=Dinothrombium... [more]
A0A1W0WI18_HYPDU2.450e-853.85Protein ecdysoneless-like protein n=1 Tax=Hypsibiu... [more]
A0A2Z6M695_TRISU3.250e-851.72Uncharacterized protein n=1 Tax=Trifolium subterra... [more]
A0A1Y1Y4C3_9FUNG3.280e-869.05SGT1-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A7S2W6K0_9STRA4.610e-860.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
G7JWE1_MEDTR6.090e-853.45Putative Ecd family protein n=1 Tax=Medicago trunc... [more]
UPI001BB11FB78.390e-864.29protein ecdysoneless homolog n=1 Tax=Lytechinus va... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12604contigEcto-sp13_S_contig12604:2099..2552 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score60.5
Seed ortholog evalue3.9e-07
Seed eggNOG ortholog28377.ENSACAP00000020599
Preferred nameECD
Model size456
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0001655,GO:0001700,GO:0001745,GO:0002009,GO:0002164,GO:0002165,GO:0002168,GO:0002376,GO:0002520,GO:0003006,GO:0003674,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006066,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006396,GO:0006397,GO:0006629,GO:0006694,GO:0006697,GO:0006725,GO:0006807,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007346,GO:0007390,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007442,GO:0007443,GO:0007458,GO:0007591,GO:0008150,GO:0008152,GO:0008202,GO:0008205,GO:0008258,GO:0008283,GO:0008362,GO:0008380,GO:0008610,GO:0009058,GO:0009059,GO:0009605,GO:0009607,GO:0009608,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009887,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009987,GO:0010256,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010817,GO:0016043,GO:0016070,GO:0016071,GO:0016125,GO:0016126,GO:0016319,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030808,GO:0030811,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0034754,GO:0035035,GO:0035239,GO:0035295,GO:0040003,GO:0042180,GO:0042181,GO:0042303,GO:0042325,GO:0042335,GO:0042445,GO:0042446,GO:0043021,GO:0043085,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043467,GO:0043470,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044877,GO:0045455,GO:0045456,GO:0045893,GO:0045935,GO:0045944,GO:0046165,GO:0046483,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048542,GO:0048546,GO:0048565,GO:0048592,GO:0048598,GO:0048609,GO:0048619,GO:0048729,GO:0048731,GO:0048732,GO:0048749,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051193,GO:0051196,GO:0051252,GO:0051254,GO:0051341,GO:0051353,GO:0051704,GO:0051707,GO:0051726,GO:0055123,GO:0060255,GO:0060322,GO:0060429,GO:0060562,GO:0061326,GO:0061333,GO:0061525,GO:0062012,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071704,GO:0071840,GO:0072001,GO:0072002,GO:0080090,GO:0090304,GO:0090596,GO:0097659,GO:0140110,GO:1900371,GO:1900542,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:1901987,GO:1901990,GO:1902652,GO:1902653,GO:1902680,GO:1902806,GO:1903218,GO:1903220,GO:1903506,GO:1903508,GO:1903578,GO:2000045,GO:2000112,GO:2001141,GO:2001169
Exons1
EggNOG free text desc.Ecdysoneless cell cycle regulator
EggNOG OGs38H0J@33154,3BDYG@33208,3CXQ1@33213,485B8@7711,497YS@7742,KOG2406@1,KOG2406@2759
Cds size219
COG Functional cat.K
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.7412555-UTR-Ecto-sp13_S_contig12604:2098..23331681462672.7412555-UTR-Ecto-sp13_S_contig12604:2098..2333Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12604 2099..2333 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.7542653-CDS-Ecto-sp13_S_contig12604:2333..25521681462672.7542653-CDS-Ecto-sp13_S_contig12604:2333..2552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12604 2334..2552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12604.2154.1prot_Ecto-sp13_S_contig12604.2154.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12604 2334..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12604.2154.1

>prot_Ecto-sp13_S_contig12604.2154.1 ID=prot_Ecto-sp13_S_contig12604.2154.1|Name=mRNA_Ecto-sp13_S_contig12604.2154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MTVACCSNGPLLVPGEDDEQDNNADVPTDDYKPVDVDMNLVKHLLESTVS
QGGLSGPASNLLRSMGLNFPSIP
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mRNA from alignment at Ecto-sp13_S_contig12604:2099..2552+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12604.2154.1 ID=mRNA_Ecto-sp13_S_contig12604.2154.1|Name=mRNA_Ecto-sp13_S_contig12604.2154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12604:2099..2552+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGAGCTATCGGGGTGTGCCACGGTGCTGAAAACGCACGGGACGAAAAGT
TGGGACACAAACCATCGCGGTATTGGTCGCATGTGGATGTCTGCATCCTT
GCTTGGCATGGTCATGCATACGGAGTAGTGTCATCCGTCATGCGATGTTG
CTTTCCCCCTTAAACGCAGTACCTGTTGCGTGTACGCATCTGTTTCGGCG
TTAAAATAACGCCGACATTCGTGACCCTACTGATAATGACCGTTGCGTGT
TGTTCCAATGGTCCGTTGCTGGTTCCAGGCGAAGACGACGAGCAAGACAA
CAATGCCGATGTGCCAACCGACGACTACAAACCGGTGGATGTGGACATGA
ACTTGGTGAAACATCTTCTAGAATCAACAGTCTCGCAAGGAGGGTTGTCC
GGTCCTGCATCGAATTTACTTCGTTCGATGGGTCTGAACTTCCCTTCGAT
ACCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12604:2099..2552+

>mRNA_Ecto-sp13_S_contig12604.2154.1 ID=mRNA_Ecto-sp13_S_contig12604.2154.1|Name=mRNA_Ecto-sp13_S_contig12604.2154.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12604:2099..2552+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCGTTGCGTGTTGTTCCAATGGTCCGTTGCTGGTTCCAGGCGAAGA
CGACGAGCAAGACAACAATGCCGATGTGCCAACCGACGACTACAAACCGG
TGGATGTGGACATGAACTTGGTGAAACATCTTCTAGAATCAACAGTCTCG
CAAGGAGGGTTGTCCGGTCCTGCATCGAATTTACTTCGTTCGATGGGTCT
GAACTTCCCTTCGATACCG
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