prot_Ecto-sp13_S_contig98987.21539.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig98987.21539.1
Unique Nameprot_Ecto-sp13_S_contig98987.21539.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length104
Homology
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: UPI001C69D305 (thiamine ABC transporter substrate binding subunit n=1 Tax=Hoeflea sp. WL0058 TaxID=2865987 RepID=UPI001C69D305)

HSP 1 Score: 142 bits (357), Expect = 4.040e-39
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = 0
Query:    8 FTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            FT L+ +A   A P  ASA ++TLT+YTY+SFVADWGPGPV+ EAFEA+CDCT+EWV   DGVA+LNRLR EGDST AD+VLGLDTNL AEA ATGL
Sbjct:   10 FTCLATIATLSAAP--ASASDKTLTVYTYESFVADWGPGPVVKEAFEAECDCTLEWVGVADGVALLNRLRLEGDSTKADVVLGLDTNLVAEAKATGL 104          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: UPI0019A4AFF1 (Thiamine ABC transporter substrate-binding protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI0019A4AFF1)

HSP 1 Score: 130 bits (326), Expect = 9.290e-37
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0
Query:   11 LSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            ++AL+A +A    A+A E TLTIYTYDSF+ +WGPG  + EAFE  CDC IEWVAPGDGVA+LNRL+ EG +T AD+VLGLDTNLT+EAVATGL
Sbjct:    5 IAALSALLAFAAPAAARE-TLTIYTYDSFITEWGPGAKIKEAFEKSCDCVIEWVAPGDGVALLNRLKLEGRNTKADVVLGLDTNLTSEAVATGL 97          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: UPI0010AA193E (thiamine ABC transporter substrate binding subunit n=1 Tax=Nitratireductor sp. XY-223 TaxID=2561926 RepID=UPI0010AA193E)

HSP 1 Score: 133 bits (335), Expect = 7.360e-36
Identity = 65/104 (62.50%), Postives = 78/104 (75.00%), Query Frame = 0
Query:    1 MANRLFTFTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            M  R   F+A  A  A++A    A AD+R LT+YTYDSFVA+WGPGPV+ EAFEAQCDCT+ WV   DGVA+LNRL+ EG++T AD+VLGLDTNL  EA  TGL
Sbjct:    1 MPARTTLFSAAFAAFASIASATGAVADDRELTVYTYDSFVAEWGPGPVVKEAFEAQCDCTLNWVGIADGVALLNRLKLEGETTKADIVLGLDTNLVTEAKKTGL 104          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A2W2BUU4_9HYPH (Thiamine-binding periplasmic protein n=1 Tax=Aestuariivirga litoralis TaxID=2650924 RepID=A0A2W2BUU4_9HYPH)

HSP 1 Score: 132 bits (331), Expect = 2.500e-35
Identity = 66/98 (67.35%), Postives = 77/98 (78.57%), Query Frame = 0
Query:    7 TFTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            T TAL AL    A  +A    + TLT+YTYDSFVA+WGPGP + EAFE  CDCT+EWVAPGDGVA+LNRL+ EG +T AD+VLGLDTNLTAEA+ TGL
Sbjct:    4 TLTALFALLTLTAPALA----KDTLTVYTYDSFVAEWGPGPRVKEAFEKTCDCTVEWVAPGDGVAMLNRLKLEGKNTRADVVLGLDTNLTAEALKTGL 97          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A6B0TT19_9RHOB (Thiamine-binding periplasmic protein n=1 Tax=Oceanomicrobium pacificus TaxID=2692916 RepID=A0A6B0TT19_9RHOB)

HSP 1 Score: 129 bits (324), Expect = 2.900e-34
Identity = 64/99 (64.65%), Postives = 78/99 (78.79%), Query Frame = 0
Query:    9 TALSALAAAVAVPVAA---SADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            T L  LAAA+A+P+A    +AD+  LT+YTYDSFV+DWGPGP + EAFEA CDCT++ V  GDG A+L+RL+ EG  T AD+VLGLDTNLTAEAV TGL
Sbjct:    2 TRLPLLAAAIAIPLAGPAMAADKPELTVYTYDSFVSDWGPGPAVVEAFEATCDCTLKLVGVGDGAAILSRLKLEGGRTRADVVLGLDTNLTAEAVETGL 100          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: UPI00199348FE (Thiamine ABC transporter substrate binding subunit n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=UPI00199348FE)

HSP 1 Score: 129 bits (323), Expect = 4.170e-34
Identity = 59/77 (76.62%), Postives = 66/77 (85.71%), Query Frame = 0
Query:   28 ERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            + TLTIYTYDSFV +WGPG  + EAFE  CDC IEWVAPGDGVAVLNRL+ EG +T AD+VLGLDTNLT+EAVATGL
Sbjct:   25 KETLTIYTYDSFVTEWGPGGKIKEAFEKTCDCAIEWVAPGDGVAVLNRLKLEGKNTKADVVLGLDTNLTSEAVATGL 101          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A2E2X7X2_9HYPH (Thiamine-binding periplasmic protein n=3 Tax=Hyphomicrobiales TaxID=356 RepID=A0A2E2X7X2_9HYPH)

HSP 1 Score: 127 bits (319), Expect = 1.760e-33
Identity = 61/99 (61.62%), Postives = 74/99 (74.75%), Query Frame = 0
Query:    6 FTFTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            FT  ALS  A       AA A +RTLT+YTY+SF+A+WGPGP++ EAFE  CDCT+ WV   DGVA+LNR++ EGDS +A +VLGLDTNL AEA ATGL
Sbjct:    7 FTSVALSLAATVSLTSFAAQAADRTLTVYTYESFIAEWGPGPLVKEAFEKGCDCTLNWVGVEDGVALLNRVKLEGDSAEAGVVLGLDTNLVAEAKATGL 105          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A021X143_9HYPH (Thiamine-binding periplasmic protein n=13 Tax=Proteobacteria TaxID=1224 RepID=A0A021X143_9HYPH)

HSP 1 Score: 126 bits (316), Expect = 4.530e-33
Identity = 61/97 (62.89%), Postives = 76/97 (78.35%), Query Frame = 0
Query:    8 FTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            F+ ++ALA ++A+P  A A E+TLT+YTY+SFVA+WGPGP + EAFE  C CT+EWV   DGV +L RL+ EG+ST ADLVLGLDTNL  EA ATGL
Sbjct:    6 FSTIAALAVSLALP--ALAQEKTLTVYTYESFVAEWGPGPKVKEAFEKTCGCTVEWVGVADGVELLTRLKLEGESTKADLVLGLDTNLITEAKATGL 100          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A316J853_9HYPH (Thiamine-binding periplasmic protein n=2 Tax=Falsochrobactrum TaxID=1649292 RepID=A0A316J853_9HYPH)

HSP 1 Score: 124 bits (311), Expect = 2.350e-32
Identity = 62/94 (65.96%), Postives = 75/94 (79.79%), Query Frame = 0
Query:   11 LSALAAAVAVPVAASADER-TLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATG 103
            LS LA + AV +A +A  + TLTIYTYDSFVADWGPGP + E FE +CDC ++WVA  DGVA+LNRL+ EG +T AD+VLGLDTNLT+EA ATG
Sbjct:    4 LSLLAFSAAVILAPAAQAKDTLTIYTYDSFVADWGPGPKIKENFEKECDCELQWVASADGVALLNRLKLEGGNTKADIVLGLDTNLTSEARATG 97          
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Match: A0A2E2MA23_9HYPH (Thiamine-binding periplasmic protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A2E2MA23_9HYPH)

HSP 1 Score: 124 bits (310), Expect = 3.770e-32
Identity = 58/98 (59.18%), Postives = 74/98 (75.51%), Query Frame = 0
Query:    7 TFTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLTEAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAVATGL 104
            T  ALS  A     P AA A ++TLT+YTY+SF+A+WGPGP++ EAFE +C CT+ WV   DGVA+LNR++ EGD+ +A +VLGLDTNL AEA ATGL
Sbjct:    8 TTLALSLAATVSLAPFAARAADKTLTVYTYESFIAEWGPGPLVKEAFEKECGCTLNWVGVEDGVALLNRVKLEGDTAEAGVVLGLDTNLVAEAKATGL 105          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98987.21539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C69D3054.040e-3971.13thiamine ABC transporter substrate binding subunit... [more]
UPI0019A4AFF19.290e-3768.09Thiamine ABC transporter substrate-binding protein... [more]
UPI0010AA193E7.360e-3662.50thiamine ABC transporter substrate binding subunit... [more]
A0A2W2BUU4_9HYPH2.500e-3567.35Thiamine-binding periplasmic protein n=1 Tax=Aestu... [more]
A0A6B0TT19_9RHOB2.900e-3464.65Thiamine-binding periplasmic protein n=1 Tax=Ocean... [more]
UPI00199348FE4.170e-3476.62Thiamine ABC transporter substrate binding subunit... [more]
A0A2E2X7X2_9HYPH1.760e-3361.62Thiamine-binding periplasmic protein n=3 Tax=Hypho... [more]
A0A021X143_9HYPH4.530e-3362.89Thiamine-binding periplasmic protein n=13 Tax=Prot... [more]
A0A316J853_9HYPH2.350e-3265.96Thiamine-binding periplasmic protein n=2 Tax=Falso... [more]
A0A2E2MA23_9HYPH3.770e-3259.18Thiamine-binding periplasmic protein n=1 Tax=Hypho... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.190.10coord: 28..104
e-value: 7.0E-21
score: 76.8
NoneNo IPR availablePANTHERPTHR30006THIAMINE-BINDING PERIPLASMIC PROTEIN-RELATEDcoord: 13..104
NoneNo IPR availablePANTHERPTHR30006:SF3THIAMINE-BINDING PERIPLASMIC PROTEINcoord: 13..104
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..104
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..25
score: 0.718
NoneNo IPR availableSUPERFAMILY53850Periplasmic binding protein-like IIcoord: 26..104

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98987contigEcto-sp13_S_contig98987:3..314 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98987.21539.1mRNA_Ecto-sp13_S_contig98987.21539.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig98987 3..314 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig98987.21539.1 ID=prot_Ecto-sp13_S_contig98987.21539.1|Name=mRNA_Ecto-sp13_S_contig98987.21539.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MANRLFTFTALSALAAAVAVPVAASADERTLTIYTYDSFVADWGPGPVLT
EAFEAQCDCTIEWVAPGDGVAVLNRLRFEGDSTDADLVLGLDTNLTAEAV
ATGL
back to top