mRNA_Ecto-sp13_S_contig98925.21533.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98925.21533.1
Unique NamemRNA_Ecto-sp13_S_contig98925.21533.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98925.21533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98925contigEcto-sp13_S_contig98925:2..469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size468
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.3695345-UTR-Ecto-sp13_S_contig98925:1..71681464250.3695345-UTR-Ecto-sp13_S_contig98925:1..7Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig98925 2..7 +
1681464250.3949268-UTR-Ecto-sp13_S_contig98925:319..4691681464250.3949268-UTR-Ecto-sp13_S_contig98925:319..469Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig98925 320..469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.381086-CDS-Ecto-sp13_S_contig98925:7..3191681464250.381086-CDS-Ecto-sp13_S_contig98925:7..319Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98925 8..319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98925.21533.1prot_Ecto-sp13_S_contig98925.21533.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98925 8..319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98925.21533.1

>prot_Ecto-sp13_S_contig98925.21533.1 ID=prot_Ecto-sp13_S_contig98925.21533.1|Name=mRNA_Ecto-sp13_S_contig98925.21533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MGGVALGILLSGSSSFPRPLRPRSRLSNRAISLLWHTYALQAEPPTRCPH
SSTGHRRSRSLALASASSAVFKKMTRRCLHFSLSLYPEKEGGQLCCSNGV
KHS*
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mRNA from alignment at Ecto-sp13_S_contig98925:2..469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98925.21533.1 ID=mRNA_Ecto-sp13_S_contig98925.21533.1|Name=mRNA_Ecto-sp13_S_contig98925.21533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=468bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98925:2..469+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCTTGATGGGTGGTGTGGCTCTCGGCATCCTTTTGTCGGGCAGCAGCTC
TTTCCCGAGACCCTTGAGGCCGAGATCGAGACTGAGCAACCGAGCAATAT
CTCTCCTCTGGCACACGTATGCGCTTCAAGCGGAGCCGCCAACGCGGTGT
CCTCACTCATCGACGGGGCACCGCCGCTCTCGTTCGCTCGCTTTAGCGTC
GGCAAGTAGCGCCGTCTTCAAGAAAATGACACGCAGATGTTTGCATTTTT
CGCTCAGTTTGTATCCGGAAAAAGAAGGGGGGCAACTTTGCTGCAGCAAC
GGAGTGAAGCACTCTTGACGATTGAACGTTGTCCCCGACTGTTGTTGCCT
TATTTTGAGCCTGTGGCCCCCTGGTAGCCGCACACTCGTATTTCCTCCGC
TCGATGGCGCCCTCCTGTCTTTCAGCCAACCAACTGCTGTAGCGCGTCAA
TTTGGCCCATTCGCAGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98925:2..469+

>mRNA_Ecto-sp13_S_contig98925.21533.1 ID=mRNA_Ecto-sp13_S_contig98925.21533.1|Name=mRNA_Ecto-sp13_S_contig98925.21533.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98925:2..469+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTGGTGTGGCTCTCGGCATCCTTTTGTCGGGCAGCAGCTCTTTCCC
GAGACCCTTGAGGCCGAGATCGAGACTGAGCAACCGAGCAATATCTCTCC
TCTGGCACACGTATGCGCTTCAAGCGGAGCCGCCAACGCGGTGTCCTCAC
TCATCGACGGGGCACCGCCGCTCTCGTTCGCTCGCTTTAGCGTCGGCAAG
TAGCGCCGTCTTCAAGAAAATGACACGCAGATGTTTGCATTTTTCGCTCA
GTTTGTATCCGGAAAAAGAAGGGGGGCAACTTTGCTGCAGCAACGGAGTG
AAGCACTCTTGA
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