mRNA_Ecto-sp13_S_contig9892.21532.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9892.21532.1
Unique NamemRNA_Ecto-sp13_S_contig9892.21532.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Match: A0A6H5L2U6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2U6_9PHAE)

HSP 1 Score: 238 bits (606), Expect = 1.650e-75
Identity = 134/149 (89.93%), Postives = 144/149 (96.64%), Query Frame = 1 
Query:    1 EELKKKEADLEAEITAEEERHSRQAAAMSAFRAAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQDGLSDKIPKKQKGKKKGFMGTMVDFALGTDREGDDDNEARELDYAEQTQLIAKKAKLALVNRQIQELKRAEKTIASDFASADA 447
            EELKKKEADLEAEITAEEERHSRQAAAMSAFR AERDDTAAQFGKDHADAAVERMKHRIEKLKAIQD LSDK  +KQKGKKKGFMGTMV+FALGT+REGDDDNEA+ELDYAEQTQLIAKKAKLALVNRQ++ELKRA+KT++ D+ASADA
Sbjct:  164 EELKKKEADLEAEITAEEERHSRQAAAMSAFRGAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQDSLSDKT-EKQKGKKKGFMGTMVEFALGTEREGDDDNEAQELDYAEQTQLIAKKAKLALVNRQLEELKRAKKTVSLDYASADA 311
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BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Match: D8LL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL55_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.260e-52
Identity = 105/128 (82.03%), Postives = 115/128 (89.84%), Query Frame = 1 
Query:   82 MSAFRAAERDDTAAQFGKDHADAAVERMKHRIEKLKAIQ------DGLSDKIPKKQKGKKKGFMGTMVDFALGTDREGDDDNEARELDYAEQTQLIAKKAKLALVNRQIQELKRAEKTIASDFASADA 447
            MSAFRAAERDD AAQFGKDHADAAVERMKHRIEKLK IQ      DGLSDK P+KQKGKKKGFMGTMV+FALGT  E DD +EA+ELDYA+QTQLIAKKAKLALVNRQI++LKRA+KTI+SD+ASADA
Sbjct:    1 MSAFRAAERDDRAAQFGKDHADAAVERMKHRIEKLKEIQVLLQAKDGLSDKTPEKQKGKKKGFMGTMVEFALGTGGEDDDVSEAQELDYAKQTQLIAKKAKLALVNRQIEDLKRAKKTISSDYASADA 128
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9892.21532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2U6_9PHAE1.650e-7589.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL55_ECTSI1.260e-5282.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9892contigEcto-sp13_S_contig9892:2499..4508 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score191.0
Seed ortholog evalue3.9e-46
Seed eggNOG ortholog2880.D8LL55
Model size450
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2EV1A@1,2SX3F@2759
Cds size447
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464250.3001678-CDS-Ecto-sp13_S_contig9892:2498..25341681464250.3001678-CDS-Ecto-sp13_S_contig9892:2498..2534Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9892 2499..2534 +
1681464250.3133235-CDS-Ecto-sp13_S_contig9892:3591..37531681464250.3133235-CDS-Ecto-sp13_S_contig9892:3591..3753Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9892 3592..3753 +
1681464250.3241167-CDS-Ecto-sp13_S_contig9892:4037..41291681464250.3241167-CDS-Ecto-sp13_S_contig9892:4037..4129Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9892 4038..4129 +
1681464250.3371902-CDS-Ecto-sp13_S_contig9892:4349..45061681464250.3371902-CDS-Ecto-sp13_S_contig9892:4349..4506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9892 4350..4506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9892.21532.1prot_Ecto-sp13_S_contig9892.21532.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9892 2499..4506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9892.21532.1

>prot_Ecto-sp13_S_contig9892.21532.1 ID=prot_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=149bp
EELKKKEADLEAEITAEEERHSRQAAAMSAFRAAERDDTAAQFGKDHADA
AVERMKHRIEKLKAIQDGLSDKIPKKQKGKKKGFMGTMVDFALGTDREGD
DDNEARELDYAEQTQLIAKKAKLALVNRQIQELKRAEKTIASDFASADA
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mRNA from alignment at Ecto-sp13_S_contig9892:2499..4508+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9892.21532.1 ID=mRNA_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9892:2499..4508+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAGCTGAAAAAGAAGGAGGCGGACCTCGAAGCGGTACGTGTGGGACC
AGGTTCACGATTGGGCGTGAATGACGCTTTCCCCAAAACATTCATGCAAT
TTCATTTTTGCTCTGGGCTTATCGAAGACTTGAATGCATTCCAAAGTGCA
CGCTGGTTAGAGGAGATAAATCTCATCAAGGATTCCTGGCAAAGACGGGA
GGGATCCACCCTTAACTGCTCTTGTGGTCTATTGGAAATGGGTGTTGGGT
TGATGGGAATTGGCTACTTGGTCAACACAATGCGACTTCGAGAAATGTTT
CTTCGTTGAGCAGATGCAACATCTGAGGGTTTATCGATGTAGTGGTCGAA
TTATCGCCTCGTTGTTTGTCGAAACCCGGGGTCATGAGTGAAAAAAGTAG
CCCTCTCTTTGTCATTCCGTGGACAAGGAGGGGAACCTACAGAGCGCGTG
GAGAGACCGAAGGACAGGAGCGGCCGCTCAACGTAGTGGCAACAGAACAG
CAAAACTCCCGCAATCCCCTTCCTTTTCTTTCGAAGGTGGTGGAACAAGC
TCGGGAACATTCGGTATCTTGTCGGGTGTTGTAGATGGTGTGAACGATTT
GAGGACTTGGTCAGTTTGGGGAGCCCTGTACTCGCAGTAGCAGTCCCTCG
GCTGGTATTTTCGTGTTGCGAGAGAGGCGTTTATGGCAGTTAACGCCGTG
CCCCGCAGCCAATACGACTGGCAAGACGATGCCCGTCCCGCGTGTTTCTC
TCCTCAACACGTGGCCTAGAAACCGCATAAATCACGACGCAATTCGAAAG
GAAACAACAAAGAACATGAATAATACCGGAAACACATGGTTCGATGTTGG
ACAAAAAAACAAGATGAAGCGCAGGTTGCGGGCTTCTACGCTAAACGAGT
TGTCGTTCCACGTTGTGCGTACACCGTCAATCCGATGCGTCACCGGTGTT
GTTTCCAACGTGTACGCCAAGCACGTGTTGCGCACACAGTCGTTCTCTTG
CATGCTATGAGTTCGTCAACGGTAATACTCAGTAGAGGTTGCCACCACGG
AACCCTGTCGCTTTGGACCACGACTTCTATGAACCACCGCTAGGAAATCA
CGGCAGAGGAGGAAAGACATTCCAGGCAAGCTGCAGCAATGAGCGCCTTC
CGCGCCGCCGAGAGAGATGACACGGCGGCCCAGTTCGGGAAAGACCACGC
CGACGCGGCCGTGGAGAGAATGAAGCACCGCATTGAGAAGCTGAAGGCAA
TACAGGTACTGCTACAGGCGAAGGTTTCAAGTGATTGATATTCTCAGGAG
TGACACTTCGAGACCGATTCGAACGGTTCTCTGCTTTCATAGTTCAAAAG
TGACCAATGTGTGGCCTCGTTCCGAAAAACATTCGGGAGGACGAGAGAGG
GGTTTCGAGCCTCTTTGTAGTCGAAACTCCCAACGTGTTCATTTTTCAGC
GCACGAGCAGTACGAACGCCTCTCTCGGTTTACGAGTCCTTTTCAGTACC
GTAACCCTTCCCGTGCATCGTCTGGTACATTACTTACAGGACGGTCTCAG
CGACAAGATACCCAAGAAGCAGAAGGGGAAGAAAAAAGGGTTCATGGGCA
CAATGGTGGACTTTGCTCTTGGCACTGACAGGTGAGAGGATGCACGCTGC
TGCTTCCCAAACTCTCAGTTTCGAAGCAGTAGCTCTCGTATTCAACTGTT
AAGCATACGTAGGTGCAGTGTATCGGAACATCCCACGGTGCCGTACTTAA
TCTCAAATAGTCTGTCTTTTCGGGACACGAACCTTTTAGCTTGGGTGTAT
ATGCCAACGCCCACGTTGTTGCATCAATTATTTAAACCCATCGTGTGTCA
GGGAAGGTGACGATGACAATGAGGCACGAGAGTTGGACTACGCCGAACAG
ACTCAGCTTATCGCCAAGAAGGCCAAGCTCGCATTGGTGAACCGGCAAAT
ACAAGAGCTCAAGAGGGCCGAGAAAACCATCGCCTCGGATTTTGCGTCTG
CGGACGCCCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9892:2499..4508+

>mRNA_Ecto-sp13_S_contig9892.21532.1 ID=mRNA_Ecto-sp13_S_contig9892.21532.1|Name=mRNA_Ecto-sp13_S_contig9892.21532.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=447bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9892:2499..4508+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAGCTGAAAAAGAAGGAGGCGGACCTCGAAGCGGAAATCACGGCAGA
GGAGGAAAGACATTCCAGGCAAGCTGCAGCAATGAGCGCCTTCCGCGCCG
CCGAGAGAGATGACACGGCGGCCCAGTTCGGGAAAGACCACGCCGACGCG
GCCGTGGAGAGAATGAAGCACCGCATTGAGAAGCTGAAGGCAATACAGGA
CGGTCTCAGCGACAAGATACCCAAGAAGCAGAAGGGGAAGAAAAAAGGGT
TCATGGGCACAATGGTGGACTTTGCTCTTGGCACTGACAGGGAAGGTGAC
GATGACAATGAGGCACGAGAGTTGGACTACGCCGAACAGACTCAGCTTAT
CGCCAAGAAGGCCAAGCTCGCATTGGTGAACCGGCAAATACAAGAGCTCA
AGAGGGCCGAGAAAACCATCGCCTCGGATTTTGCGTCTGCGGACGCC
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