mRNA_Ecto-sp13_S_contig12603.2153.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12603.2153.1
Unique NamemRNA_Ecto-sp13_S_contig12603.2153.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12603.2153.1 vs. uniprot
Match: A0A6H5JDI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDI9_9PHAE)

HSP 1 Score: 106 bits (265), Expect = 5.630e-24
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:  175 EELDPLPELPESADERFFSKEALEFQYPTGPAENPLFPTWGSTGAEMAAIGAA 333
            EELDPLPELPESADERFF+KEALEFQYPTGPAENPLFPTWGSTGAEMAAIGAA
Sbjct:    7 EELDPLPELPESADERFFTKEALEFQYPTGPAENPLFPTWGSTGAEMAAIGAA 59
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12603.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDI9_9PHAE5.630e-2498.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12603contigEcto-sp13_S_contig12603:686..3230 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size444
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-21_001130.1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.6383872-CDS-Ecto-sp13_S_contig12603:687..9511681462672.6383872-CDS-Ecto-sp13_S_contig12603:687..951Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12603 688..951 -
1681462672.7030823-CDS-Ecto-sp13_S_contig12603:3053..32301681462672.7030823-CDS-Ecto-sp13_S_contig12603:3053..3230Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12603 3054..3230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12603.2153.1prot_Ecto-sp13_S_contig12603.2153.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12603 688..3230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12603.2153.1

>prot_Ecto-sp13_S_contig12603.2153.1 ID=prot_Ecto-sp13_S_contig12603.2153.1|Name=mRNA_Ecto-sp13_S_contig12603.2153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
TLSLRQGKGRDRLVGDTWGCRALCEQTTISTTAARSLAGKTNKAVAMEDN
RDNYADILEELDPLPELPESADERFFSKEALEFQYPTGPAENPLFPTWGS
TGAEMAAIGAAAAAKAGTSAAAAPAAGSTTSSPAAGGPAGAAVPSPA
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mRNA from alignment at Ecto-sp13_S_contig12603:686..3230-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12603.2153.1 ID=mRNA_Ecto-sp13_S_contig12603.2153.1|Name=mRNA_Ecto-sp13_S_contig12603.2153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2545bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12603:686..3230- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCTCTCTCTACGGCAAGGGAAGGGTCGTGATAGATTGGTCGGAGACAC
GTGGGGTTGCCGAGCTCTCTGTGAACAGACTACGATTTCTACTACGGCAG
CACGCAGCTTGGCAGGCAAAACAAACAAAGCCGTGGCGATGGAGGATAAC
CGGGATAACTACGCCGATATTTTGGAGGTGAGAGAGAGAGAGCAAGGAGG
CGGCAGCAGCGCTATTTTAAGAGGAGCTGTTTCTTGCTGGAGTACGTGCT
GTGTCTTATTGGCCAGCCCCATCTATGCTCCGAGGGGAGCGCTGGGGGCA
GGCGGAAATCCCCGTTGGTGGGCGCCTTGCTATCTTGTCGGACGTTGTTG
AGGCTGCAGATGATTCTGGTCGTTTCTTTGGCCTCCCACAACAAGGTTCA
TGTGTGGGTGCTCGAGCGGACTGGCGCAAAAGTTTTTTCAATTTGTTGGT
TGTGGACGCTGCGCGAAGATGGTGGTCTCACTATCACCGTCCATGGCATG
GTCGACTGCGGACAGCAGTGTAGAAGGTGGCACCCGCGCGACATTTGTTG
GTCTGGGTTGGTGTAGCGCACGACGAAAGCTCACCACGACCTGGAAGCAC
TTCTCACGTTGTGCAGGTGCAAGCAACACCCAACGAACGCAGCCTACCGA
CGAATTTGTTCAAGCTGAATTGTCTTCGAAAAAGGGCAACAAGCCCGCAG
TAGATACAACGCTTTGTTGAATCGTTCATGTTTCCCTCAAGAAACGATGA
GCCACACAGCGGACGTGACCTGAGAGGCCGCACGGCTGCCATGGCACTCG
AACTGCCTCGGCCTGCGAGCTGGTGGTAGCTGTAGTGACAGTGCACGACA
AAGCGCACGAGTTTCGCCATCCCCATGTGCCGCTTGTACACCCGTTGAGG
GCTGGCTCCACTACCATCTACCAGCAGATTGTTTGCTGCCGTGCATGCGT
AGCGGAAGTGCACCCGCTGCGACTGCCGCTGGTGCGACTGCCGCTGTCCA
GACCTTCAGGCCCCATGTCGGTCTTGGTGAACACATTTAGGCTCTTGTGT
ACTTGAGCAGCAGAAACAGAGGGTTTTGCTCGCGAGATGAGAGCAGATCC
ACACCGGCTGCTTGTTGCGGGTGTTGTGAATGTGTCGTGTGCGCCCAACA
AGTAGGAACGGAGAGCAGTTACAAAAGTGTCCGCACTGCTACTGCTGTAC
ATGTGTGTTTGAGGTGGTACCGCCAGTGGTGTGCAGGGGCGGTAGTCGCC
TTTACGAGAGCAGTAAGTCTGCGAAGGTATTGTATCTATGTATCCCTGCG
AGATCTCGTGCCTACCTACAGCACCGGCCAGCAGCCAGCAGCCAGCAGCA
GCCAGAGCAATCCACCGCTTTTTTGGAACGTGCTACTTGCTCTTTCAAGA
AGTATCATACGGTTCATGATTTGAGGGAATCTCGCCCCTCTCTCCCCTGA
TCGCATGTAGGTACAGCAGTAGCTGCATCACTCGCCACACAGTTAGCATC
CCGGTTCATCGTGTCGCGTTTTGTCTCTTGTTGTTTGCGTTGTTCCAGCT
GTCAGAACCTTCAGTATGTACACTAATTAACATCTGTGGACTAAAGTACA
TCATAGCTGTGTTTTTCCGAAGAAGCGGGCGCGGCGTGATGTTCAAAGAT
GCGGCGGGAAGGCGTAACGGCCCTCGTTTGTGACATATTTGAGAACTCGC
TACGAACTTGTGTTGGTCGAAGGCCTAACCCACTACATGAGTCAAGTAAC
TGCACAGCCAGCGCCTATGCCTGTGGGTATTTATTATGTCGCCTTCAGAT
GTTGGGCGACAGCAGTCTACCCCGGCCGTTTTGACACTACAAATTGGACA
CACATGTTTCGGAACCATACACATGTTCGGCCCACAGAGGTCACACATTA
GAAGTTCTCTTCTTCCTTCCTTATCGCCTCCTGCGGTCCTTTCCTACATT
TTCTTTCGCGAGAAAGGTTCAGCAGCCCCTTCCCTTTTTCTTGCTTGCGT
ACGCTCACGACTGTTGCCCTTAATTCGTATTATTGTCACGCATACTAATT
TGCGAATAATTCATTCGCGGATTAGATAATATAGTCTATAAAATACTTGT
ACAACTGTTGCATGTAAGAAAACTACTCCAGTTGTAGTTTTTACCACTCC
GAACGACGTATTATATATTTATCAAACAACGAGAGTCTTGCTTGCTTGCG
CTTGCCCCACCGCATCGTTACCCGTCCCATTCTAACGCACAGTCCTCCTT
TTCTTATAATATCCCGCGTTCTTTACCAGGAGCTGGACCCTCTACCTGAA
CTACCGGAGAGCGCCGACGAGCGATTCTTCAGCAAGGAAGCTCTGGAGTT
CCAATACCCGACCGGACCGGCGGAGAACCCGCTGTTCCCGACCTGGGGGT
CGACGGGCGCGGAGATGGCGGCGATAGGAGCAGCGGCGGCCGCCAAAGCA
GGAACCTCCGCGGCCGCGGCCCCGGCCGCGGGCAGCACGACTAGCTCGCC
GGCTGCGGGCGGGCCAGCTGGAGCGGCAGTGCCATCTCCGGCGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12603:686..3230-

>mRNA_Ecto-sp13_S_contig12603.2153.1 ID=mRNA_Ecto-sp13_S_contig12603.2153.1|Name=mRNA_Ecto-sp13_S_contig12603.2153.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12603:686..3230- (Ectocarpus species13 EcNAP12_S_4_19m)
ACTCTCTCTCTACGGCAAGGGAAGGGTCGTGATAGATTGGTCGGAGACAC
GTGGGGTTGCCGAGCTCTCTGTGAACAGACTACGATTTCTACTACGGCAG
CACGCAGCTTGGCAGGCAAAACAAACAAAGCCGTGGCGATGGAGGATAAC
CGGGATAACTACGCCGATATTTTGGAGGAGCTGGACCCTCTACCTGAACT
ACCGGAGAGCGCCGACGAGCGATTCTTCAGCAAGGAAGCTCTGGAGTTCC
AATACCCGACCGGACCGGCGGAGAACCCGCTGTTCCCGACCTGGGGGTCG
ACGGGCGCGGAGATGGCGGCGATAGGAGCAGCGGCGGCCGCCAAAGCAGG
AACCTCCGCGGCCGCGGCCCCGGCCGCGGGCAGCACGACTAGCTCGCCGG
CTGCGGGCGGGCCAGCTGGAGCGGCAGTGCCATCTCCGGCG
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