prot_Ecto-sp13_S_contig98735.21518.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig98735.21518.1
Unique Nameprot_Ecto-sp13_S_contig98735.21518.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length170
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Match: A0A0K6INB7_9GAMM (F plasmid transfer operon, TraF, protein n=2 Tax=Marinomonas TaxID=28253 RepID=A0A0K6INB7_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 43/170 (25.29%), Postives = 73/170 (42.94%), Query Frame = 0 
Query:    3 LTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADA---KVAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDCAGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIILMAGADTNASRNITGESQRW 169
            L YS ++     G+L  G  L+ H   L  G A     S+D   +DA       +  T  +  L  D+G  W +  ++ +G  A NL EP+FEY +LP++CA      +   N          +E N +  +  Q T++    +    + L A  + N   ++ G+  +W
Sbjct:  195 LGYSTDVYSSDAGTLVLGTKLNAHSVTL--GKALQHLESSDDDTSDAFXXXXXXQQETTTDFGL--DLGAIWAAE-HYQLGFQATNLNEPSFEYGKLPSNCATESPIDQPSCNAALEFAQKGEIELNEEYTMERQFTVEALTFVFDRQLSLAASYELNEVADLVGDEYQW 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K6INB7_9GAMM1.460e-625.29F plasmid transfer operon, TraF, protein n=2 Tax=M... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032811Putative conjugal transfer protein TraF-relatedPFAMPF13729TraF_2coord: 1..144
e-value: 5.2E-18
score: 65.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98735contigEcto-sp13_S_contig98735:8..517 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98735.21518.1mRNA_Ecto-sp13_S_contig98735.21518.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig98735 8..517 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig98735.21518.1 ID=prot_Ecto-sp13_S_contig98735.21518.1|Name=mRNA_Ecto-sp13_S_contig98735.21518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
LSLTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADAK
VAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDC
AGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIIL
MAGADTNASRNITGESQRWS
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032811Put_conjugal_transfer