mRNA_Ecto-sp13_S_contig98735.21518.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98735.21518.1
Unique NamemRNA_Ecto-sp13_S_contig98735.21518.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Match: A0A0K6INB7_9GAMM (F plasmid transfer operon, TraF, protein n=2 Tax=Marinomonas TaxID=28253 RepID=A0A0K6INB7_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 1.460e-6
Identity = 43/170 (25.29%), Postives = 73/170 (42.94%), Query Frame = 1 
Query:    7 LTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADA---KVAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDCAGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIILMAGADTNASRNITGESQRW 507
            L YS ++     G+L  G  L+ H   L  G A     S+D   +DA       +  T  +  L  D+G  W +  ++ +G  A NL EP+FEY +LP++CA      +   N          +E N +  +  Q T++    +    + L A  + N   ++ G+  +W
Sbjct:  195 LGYSTDVYSSDAGTLVLGTKLNAHSVTL--GKALQHLESSDDDTSDAFXXXXXXQQETTTDFGL--DLGAIWAAE-HYQLGFQATNLNEPSFEYGKLPSNCATESPIDQPSCNAALEFAQKGEIELNEEYTMERQFTVEALTFVFDRQLSLAASYELNEVADLVGDEYQW 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98735.21518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K6INB7_9GAMM1.460e-625.29F plasmid transfer operon, TraF, protein n=2 Tax=M... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98735contigEcto-sp13_S_contig98735:8..517 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score72.0
Seed ortholog evalue3e-10
Seed eggNOG ortholog349124.Hhal_1892
Model size510
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.F plasmid transfer operon, TraF, protein
EggNOG OGs1RFFM@1224,1S5CF@1236,2BX7Z@1,2ZBYH@2
Cds size510
COG Functional cat.S
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464249.0663667-CDS-Ecto-sp13_S_contig98735:7..5171681464249.0663667-CDS-Ecto-sp13_S_contig98735:7..517Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98735 8..517 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98735.21518.1prot_Ecto-sp13_S_contig98735.21518.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98735 8..517 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98735.21518.1

>prot_Ecto-sp13_S_contig98735.21518.1 ID=prot_Ecto-sp13_S_contig98735.21518.1|Name=mRNA_Ecto-sp13_S_contig98735.21518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
LSLTYSRELARGWRGSLQAGISLHYHDYDLSNGAAAVQATSADSVVADAK
VAAKSYTVNETALTADIGLAWVSPLNFVIGITAKNLGEPTFEYSRLPTDC
AGIDASSKAGANCRATAFFGSRLEKNRDVDLNTQITIDGSYRIPSTNIIL
MAGADTNASRNITGESQRWS
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mRNA from alignment at Ecto-sp13_S_contig98735:8..517-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98735.21518.1 ID=mRNA_Ecto-sp13_S_contig98735.21518.1|Name=mRNA_Ecto-sp13_S_contig98735.21518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98735:8..517- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCACTGACCTACAGCCGCGAGCTTGCACGGGGGTGGCGAGGCAGTCT
TCAGGCCGGCATTTCATTGCATTACCACGATTACGATCTCTCCAACGGTG
CCGCGGCAGTTCAGGCAACATCAGCAGACAGTGTTGTCGCCGACGCGAAA
GTTGCTGCCAAATCCTATACGGTCAACGAAACAGCCCTCACCGCAGACAT
AGGGCTAGCATGGGTCTCACCATTGAATTTCGTGATTGGCATTACTGCGA
AGAATCTCGGCGAACCGACTTTCGAGTACAGCCGCCTACCGACCGACTGT
GCTGGCATCGATGCTTCTTCCAAAGCCGGGGCCAATTGCCGCGCCACAGC
GTTTTTCGGCTCGCGGCTGGAAAAGAATCGGGATGTTGATCTGAACACTC
AAATCACAATTGATGGTTCATACAGAATTCCCAGCACAAACATCATCCTC
ATGGCCGGCGCCGACACCAATGCGTCCCGTAATATTACTGGTGAATCTCA
ACGTTGGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98735:8..517-

>mRNA_Ecto-sp13_S_contig98735.21518.1 ID=mRNA_Ecto-sp13_S_contig98735.21518.1|Name=mRNA_Ecto-sp13_S_contig98735.21518.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98735:8..517- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCACTGACCTACAGCCGCGAGCTTGCACGGGGGTGGCGAGGCAGTCT
TCAGGCCGGCATTTCATTGCATTACCACGATTACGATCTCTCCAACGGTG
CCGCGGCAGTTCAGGCAACATCAGCAGACAGTGTTGTCGCCGACGCGAAA
GTTGCTGCCAAATCCTATACGGTCAACGAAACAGCCCTCACCGCAGACAT
AGGGCTAGCATGGGTCTCACCATTGAATTTCGTGATTGGCATTACTGCGA
AGAATCTCGGCGAACCGACTTTCGAGTACAGCCGCCTACCGACCGACTGT
GCTGGCATCGATGCTTCTTCCAAAGCCGGGGCCAATTGCCGCGCCACAGC
GTTTTTCGGCTCGCGGCTGGAAAAGAATCGGGATGTTGATCTGAACACTC
AAATCACAATTGATGGTTCATACAGAATTCCCAGCACAAACATCATCCTC
ATGGCCGGCGCCGACACCAATGCGTCCCGTAATATTACTGGTGAATCTCA
ACGTTGGTCC
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