mRNA_Ecto-sp13_S_contig9868.21512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9868.21512.1
Unique NamemRNA_Ecto-sp13_S_contig9868.21512.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.220e-74
Identity = 138/167 (82.63%), Postives = 150/167 (89.82%), Query Frame = 1 
Query:  289 GGLQGGRYLAGGXXXXXXTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRNNYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 789
            GG QGGR+ AG XXXXXX     IKR+NDDRNGSRE+HAK KKKFHRFE+ DISSEDSIRNNYI+GGWMGGLGLGIDAYVG+G+W AELSTDP+ GEDD SR+RPVIINADEDG GDG  RWEPGQLSRLAQRQXXXXXXXXXXEGG+ARTPMLGPD V+L+ICANR
Sbjct:   28 GGPQGGRHRAGXXXXXXXXXXXXIKRKNDDRNGSREEHAKAKKKFHRFEQADISSEDSIRNNYIRGGWMGGLGLGIDAYVGDGSWGAELSTDPAGGEDDVSRRRPVIINADEDGTGDGQARWEPGQLSRLAQRQXXXXXXXXXXEGGVARTPMLGPDAVVLIICANR 194
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BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.450e-37
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1 
Query:  493 MGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 789
            MGGLGLGI+AYVG+G+WDAELS D + GEDD  R+RPVIINADE+G GDG VRWEPGQLSRLAQRQXXXXXXXXXXE GMARTPMLGPD VLLVICANR
Sbjct:    1 MGGLGLGIEAYVGDGSWDAELSADRAGGEDDV-RRRPVIINADEEGGGDGQVRWEPGQLSRLAQRQXXXXXXXXXXERGMARTPMLGPDAVLLVICANR 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXV4_ECTSI1.220e-7482.63Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE6.450e-3784.85GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9868contigEcto-sp13_S_contig9868:2495..6030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score248.4
Seed ortholog evalue3.6e-63
Seed eggNOG ortholog2880.D7FXV4
Preferred nameMGAT1
Model size798
KEGG koko:K00726
KEGG ReactionR05983
KEGG Pathwayko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting categorysignal peptide
GOsGO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons5
EggNOG free text desc.alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGsKOG1413@1,KOG1413@2759
Ec32 ortholog descriptionAlpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13
Ec32 orthologEc-23_001370.1
EC2.4.1.101
Cds size777
COG Functional cat.S
CAZyGT13
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9868.21512.1prot_Ecto-sp13_S_contig9868.21512.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9868 2516..6030 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.624117-UTR-Ecto-sp13_S_contig9868:2494..25151681464248.624117-UTR-Ecto-sp13_S_contig9868:2494..2515Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9868 2495..2515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.6383505-CDS-Ecto-sp13_S_contig9868:2515..26351681464248.6383505-CDS-Ecto-sp13_S_contig9868:2515..2635Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9868 2516..2635 +
1681464248.6495197-CDS-Ecto-sp13_S_contig9868:3434..34981681464248.6495197-CDS-Ecto-sp13_S_contig9868:3434..3498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9868 3435..3498 +
1681464248.6611733-CDS-Ecto-sp13_S_contig9868:4147..43701681464248.6611733-CDS-Ecto-sp13_S_contig9868:4147..4370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9868 4148..4370 +
1681464248.6721575-CDS-Ecto-sp13_S_contig9868:5087..52111681464248.6721575-CDS-Ecto-sp13_S_contig9868:5087..5211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9868 5088..5211 +
1681464248.6882126-CDS-Ecto-sp13_S_contig9868:5784..60301681464248.6882126-CDS-Ecto-sp13_S_contig9868:5784..6030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9868 5785..6030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9868.21512.1

>prot_Ecto-sp13_S_contig9868.21512.1 ID=prot_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MLVRVVFGSLGVLAMVTLCTSVANLDGTRESEPTGGPDFKEPAPPAGFQY
DTEADSSRRDAERLQKPPAPPVPPPPPPPPRPPLDGEGEGGLQGGRYLAG
GGGHDGGTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRN
NYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINAD
EDGEGDGLVRWEPGQLSRLAQRQQRQRDEEDEEEGGMARTPMLGPDGVLL
VICANRCM*
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mRNA from alignment at Ecto-sp13_S_contig9868:2495..6030+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9868.21512.1 ID=mRNA_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9868:2495..6030+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGACGCGGGACATTTTGGATGCTGGTACGAGTGGTGTTTGGCTCACT
GGGGGTGCTTGCCATGGTGACGTTGTGTACAAGCGTAGCCAACCTGGACG
GAACGCGAGAGAGCGAACCTACGGGAGGGCCAGATTTCAAGGTAACATCA
GTGCAGCATCTGTCCGCTACGTTTCGCGCGCTCCGCTGGTGACTGATGGC
CAGGCAGGAGAACTACCCCTTGTTGTTCTTGGTAGTGGTTCTTGTTGCAG
TGATGAGCACGGTTTTGCGACCCGCAATGTCAGAAGGGGACATATGGTCA
TAACTAAGGCAGGTGCGCCAATTGGCGGTGTGGTGGCCATGGTGCAGTGG
TGCCATGCAACATTTCCGTTGTCGCCACGCGGTGCATGTTGCTAAACAGG
GGGCCGGTAAGCCGGGCCAACCGCTTTATGACACACCCCCAATAGGAAAA
TCGGTACGCAGCCGACCCAGTTGCTGCTGCCTGCATCCTTGCTGATCCGA
CCCTTGGAAGAGTCGACTCCGCCCCCTAGCAGTCATTGGGGGGGGCTCAT
CCGGCCTTGGTATGAACCGACTCTCCTCCAGGGTCACTGGGGGGGGTGTT
GAGCACAAGACCAGATAACAATTACTACCGTAAAAGGATATTTTCAGTGT
ATAGGCTTAATTATACTCGAAATAAGCCCAGTACCCGGTTGGTTTCCCTC
CATTCACTGCAAAGACCCCAACACATCCCGTTCGACTGGGGTTATGTCTC
GAATGGATAGTCTTTTCTGTGGTTGTATTTATGTTTCCTGAAACAATGTA
CGCCTTGTATCGGTCTCGTCCCATCTCTAGTTTTTTGTCACACTTGTTGA
TTCCTAGGTTGTCATCTCTTGGTTGCCCTTCATATTCTCCTGTTCTTGAC
CGCCTCTCTCTGTTTTATTTCGTGTATCGTGGCTTCTCAGGAACCAGCGC
CCCCGGCGGGGTTTCAGTACGATACGGAGGCCGACTCTTCGCGACGGGAT
GCAGGTTTGGGTCATCGTCGAAACACTGCTGTACTTCTAAATGTTTTTTT
TTCTTACAGGCACACATCAGACTCATTTTCCTACAGCCAAGCTTGTATTG
TGGAATAGATTAGCGACGAACTCGAAGCGCTGTATGATGACAAAGCTGTT
TTTCTCATGCATCTCCAGCGGCGAACAGACCCACGTTTTTTGGTGCCGTC
ATTTTTCGTTTGTGGCTTTGTTTCTTTTCCCTGCGCGACAGATTTTCTAG
TTGTTGAAAGAGGAAAATCGTTTACTGCAAGGCACAGACGGCGGTGGCAG
CGGGTGCATAAAAACGAAGCTTTAACCCTTTGACCCTTAGTGCGACGCTT
GTTTGTTTGCAGGCACGGGACTGCACACCACCACCACCACCCCCAACCGA
TCCCCCAACTCCTGTTCGTAGGAGCAACATGTAAACCCAGCTCCGCGACG
GTGGTAGCACCGTCGAGATCAACGTCGTAGCACGATGGTCAGAAATACCG
ATGTCGAGATGGCCTCGGTGCAAAAAAGCCTTTGCTTCGTTGGTCAGTAT
CATCGACGGCATCCGGAAACAAATCCGAATGTTACGACCTGCTGTTTGTG
CACATCACGCATTTCTGTGCGTACTTGTACCTCGTTGTATCACCGCCACC
CAGAACGATTGCAGAAGCCACCGGCGCCACCTGTGCCACCACCACCGCCG
CCGCCGCCGCGACCACCGCTTGACGGTGAGGGTGAGGGGGGCCTGCAGGG
TGGGCGGTATCTGGCCGGGGGTGGGGGGCACGACGGGGGTACTAAGAAGG
AGTTCATTAAGAGAAGAAACGACGATCGAAACGGGAGTCGAGAGGATCAC
GCCAAGACGAAGAAGAAATTTCATAGGTGAGCTTGGTACACAGCAATGAG
CAGGCGTAACATTTTTGTTATATGATTTCCGTTCTTTCGATGGCAAGTGA
GACCACTTCACTGCTATAAAAGACAGCTTGATTGTCGTGTGCATGAATTG
CACCAGCCATTTTGTTAGAGATCCGCACGTTCACCTTGAATGAAATCGAA
GCGTTCGTGTGTTTTGGTTCCATCTATTCGGGCGCCTGTCTACGCACCAT
TTGGTGTACTGCAGGTGACATGATGGTAGATACCACACCCTCAGGACCGA
TTTCAAGCCTCGATTTATCCTCAACAGAATGAGTTGCCGCGCAGGAAACG
GGGGCGTTGAAGCCGCCTCGTCAAGGGGTTTCCGGTTCATTTATGCACCC
TCTTCGTCATGGAGTAATCGAGCTTTGAAAACGGGCCCTGGGGGTGTGGT
ATCTTGTACCACCCATGGCATTCGTGTGTGTGTTTGACGTGCCAGCCGGG
GGGAAGAAGGTCGCCCAGGAGCGCTTGCCGGTGTTTTGGATTTTTGTTTG
AGTACCCCGCCTTTCCTACCTCCAGAGTATGCCGCTGGCGCCGCGAAAGG
CTCACCGAGTACGACTTGTTTTTCGTTGATCCGCGGGTTGGCTTGGTCGA
TGCTAATGAACACACCCGCACACATGCACACAGGGTTGAGAAAGGAGGTA
TTTTCGTCTCAGCTGTTGAACGCGCCCGCACACGTACGAACAGGTTTGAG
AAGGTAGACATTTCGTCTGAGGACAGCATCCGCAATAATTACATCAAAGG
CGGCTGGATGGGTGGGCTTGGACTCGGCATCGATGCGTATGTCGGGAATG
GGGCGTGGGATGCGGAGGTGAGCGGCCGTTGCGGTGTGGCCTGTCAAGAG
GAGCAGGACGATGTTTAGGTAGTTCGCGTATCTGTAAAGAAAATTACGAA
GGAGGAGCGAACAACTAGTTAGTTCAGCTACACCTAAGGGACAGAATGAA
GCGGTAGTGCGGGTACCTCAAAAGTACAAGAATAGGTGGTGTGTGCGACT
AGTTCCTGTCGACAACGGGTTTGTAGTTGTAGAACAGGGGTCATGGAAGG
CTGCGCGGGGTTATTCGAGTGCTGTTGACGTTGCTCTCCAAGAGTGCTGT
GTGGGTCGATCGCGCACAGGAGATTTACGACGAGGCAGCCGGTGGATGGT
ACGATGATCATCAAGAAGTCCCGCCTACCGGTGTACTTACGTGCTCGCTT
TTTGCAAACCACTACTGCTGTGTCTCAGTATCAAGCATGCATTACGAACA
CCTATTCGTCGTTAACAAATGGTCCTCCTCATCATCAACTTATCCCCCTG
TCTAAACCGAAAAGACCGTTCCTCATGTCATCAACCGTTCCGCATTGTCA
ATAACTACAACCTGTGTCCTTATTCCAAACAACAACACAGCTCTCCACCG
ACCCCTCTGACGGCGAGGACGACGCGAGTAGAAAAAGACCGGTGATCATC
AACGCCGATGAGGACGGGGAGGGGGACGGGCTGGTGAGATGGGAGCCAGG
CCAGCTGTCGAGGCTGGCGCAGCGGCAGCAGCGGCAGAGGGATGAGGAGG
ACGAGGAGGAGGGGGGGATGGCGAGGACGCCGATGCTTGGGCCCGACGGT
GTGCTTCTGGTCATCTGCGCCAACAGGTGCATGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9868:2495..6030+

>mRNA_Ecto-sp13_S_contig9868.21512.1 ID=mRNA_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9868:2495..6030+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTACGAGTGGTGTTTGGCTCACTGGGGGTGCTTGCCATGGTGAC
GTTGTGTACAAGCGTAGCCAACCTGGACGGAACGCGAGAGAGCGAACCTA
CGGGAGGGCCAGATTTCAAGGAACCAGCGCCCCCGGCGGGGTTTCAGTAC
GATACGGAGGCCGACTCTTCGCGACGGGATGCAGAACGATTGCAGAAGCC
ACCGGCGCCACCTGTGCCACCACCACCGCCGCCGCCGCCGCGACCACCGC
TTGACGGTGAGGGTGAGGGGGGCCTGCAGGGTGGGCGGTATCTGGCCGGG
GGTGGGGGGCACGACGGGGGTACTAAGAAGGAGTTCATTAAGAGAAGAAA
CGACGATCGAAACGGGAGTCGAGAGGATCACGCCAAGACGAAGAAGAAAT
TTCATAGGTTTGAGAAGGTAGACATTTCGTCTGAGGACAGCATCCGCAAT
AATTACATCAAAGGCGGCTGGATGGGTGGGCTTGGACTCGGCATCGATGC
GTATGTCGGGAATGGGGCGTGGGATGCGGAGCTCTCCACCGACCCCTCTG
ACGGCGAGGACGACGCGAGTAGAAAAAGACCGGTGATCATCAACGCCGAT
GAGGACGGGGAGGGGGACGGGCTGGTGAGATGGGAGCCAGGCCAGCTGTC
GAGGCTGGCGCAGCGGCAGCAGCGGCAGAGGGATGAGGAGGACGAGGAGG
AGGGGGGGATGGCGAGGACGCCGATGCTTGGGCCCGACGGTGTGCTTCTG
GTCATCTGCGCCAACAGGTGCATGTAG
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