mRNA_Ecto-sp13_S_contig126.2150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI) HSP 1 Score: 1415 bits (3663), Expect = 0.000e+0 Identity = 918/1002 (91.62%), Postives = 932/1002 (93.01%), Query Frame = 1
Query: 358 MAQPLDAARLAHDLSKRIMKHPGATAAAAVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDEVGVPPGEQQPPAAGVAAHPASAPRTSGGAVDRSSSKGCKGGTTEKKAGGRSGGGRSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRK-REEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKMEYRKSEAGRRAAATDAAAAAGRGARVGYSGAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMVPVTVPVRVPLTGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRAIVASLFSKYSKPQHLMFGYYDPQVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQR--EPVVDALRASAGEGKESAFFQDSGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVNLAPKMLIVTGGSRRAKAELVSHVRQAVEPVVAGRRGRGGGXXXXXXXXXXXXXXXXEGEEEDIACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLNNYGVAHVECRVDPRGDVPLLCAKPRVERVGHPAMFLSVGKVNVTPQILQAFKKAKVSFEFVA 3354
MAQPLDAARLAHDLSKR+M H GATAA AVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDE+GVP GEQQPPAAGVAAHPASAPRTSG AVD SSS RSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDT LLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYN+DHERHLRASALGTLTRPSVLITDAHNALTGGGM RKD ++KRK RE ELI+TVMDTVRGGGNVLLPTDTAGRVLELLVLLND+WQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAK EYRKSEAGRRAAA DAAAAAGRGARVGYSGAVGA XXXXXXXXXXXXXXXXXXXXXXXXXXXX SM+VPVTVPVRVPL GEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRAIVASLFSKYSKPQHLMFGYYDP VPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EPVVDALRASAGEGKESAFFQDSGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAV LAPKMLIVTGGSRRAKAELVS+VR AVEP AGRR XXXXXXXXXXXXXXXX D+ACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQL+NYGVAHVECRVDPRGDVPLLCAKPR ERVGHPAMFLSVGKVNVTPQILQ +S F++
Sbjct: 1 MAQPLDAARLAHDLSKRMMNHHGATAA-AVPGKAPLKLLQWALSQLEECARTRSVPASNVVEVAMAAIKDEMGVPAGEQQPPAAGVAAHPASAPRTSGSAVDGSSSXXXXXXXXXXXXXXXX---RSKGKVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTALLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNNDHERHLRASALGTLTRPSVLITDAHNALTGGGMIRKD-------PSSKRKLREVELISTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDYWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKSEYRKSEAGRRAAAKDAAAAAGRGARVGYSGAVGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXASMVVPVTVPVRVPLAGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRRRAIVASLFSKYSKPQHLMFGYYDPHVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPVVDALRASAGEGKESAFFQDSGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVTLAPKMLIVTGGSRRAKAELVSYVRHAVEPAAAGRRAXXXXXXXXXXXXXXXXXXXXXXXXXDVACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLDNYGVAHVECRVDPRGDVPLLCAKPRAERVGHPAMFLSVGKVNVTPQILQVNWLETISQSFMS 991
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A836CFV8_9STRA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV8_9STRA) HSP 1 Score: 645 bits (1664), Expect = 1.670e-210 Identity = 419/935 (44.81%), Postives = 526/935 (56.26%), Query Frame = 1
Query: 748 VVFTPLYGC-DEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGN--FQAFDLDDVDAAFARFKTLKFSQHLTFS--GRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKMEYRKSEAGRRAAATDAAAAAGRGARVGYSGAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMMVPVTVPVRVPLTGEELKAFRDEENRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--KRRRAIVASLFSKYSKPQHLMFGYYDPQVPTDEYGVKETEPIGWLAAAMQQQNSEMPAAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQREPVVDALRASAGEG--KESAFFQDSGAVPTKLEQEVQELEVLCRVVYVDSEGLSDGTSVKNTAVNLAPKMLIVTGGSRRAKAELVSHVRQAVEPVVAGRRGRGGGXXXXXXXXXXXXXXXXEGEEEDIACRFVVVNKAMEPVPVALDSGAFDVLLHDSLHTHLKWKQLNNYGVAHVECRVDP------------RGDVPLLCAKPRVER--VGHPAMFLSVGKVNVTPQILQAFKKAKVSFEFVAGKVLLEGGVTVSQGKGGKIELEGPLCDSYFRVRDIIYGEYIVV 3483
V FTPLYGC D+ G PV S+LEVG VTILLDCGWDI FD +LL PL VV R+DLVLISH DLEHLGGLPYA GKLG++A V+ATLP KMGQM VYDA+ R+ E N F+AF LDD DAAF RF+ LK+SQHL FS GRGAGVTITPYAAG +IG ++WR+ WQT+DNDIVYA +YNH E HL A+ TL+RPS++ITDAH LT Q RKR +L V TVR GGNVLLP DTAGRVLELL+LL+ HW +++LGSY LVLLH+ AFNT EFAKSQLEWMS+ I + FDLQRSNPFE+R+V + HSLEEL LG P VV+ATD+SLDFGF+KALLL WA+ N +LLT RGHG++ AR L+ + A AAAAAG + V VP RVPL GEEL A+ +E XXXXXXXXXXXXXX XXXXXXXXXX KRRR + ASLFSK+SKPQHLMFG++D V D+YGV+E EPI WLA +MQ++N + V A A+A +SAF++D+G +P+K+ + +EL V RV Y+D EGLSDG SV+N + P+ L++ GGS +A + L R + C V ++ + V ALD+ FDVL+HDSL+T L+W+ + Y +A V+ V P R P+L E G PA+F+S G V +T Q+ A +KA ++ A K+ + G + V++G G ++++GPL D+YF VR I+Y +Y +V
Sbjct: 48 VTFTPLYGCFDDTGRGAGPVCSLLEVGDVTILLDCGWDIDFDESLLAPLASVVSRVDLVLISHADLEHLGGLPYAVGKLGLKAPVFATLPTLKMGQMTVYDAHQMRSLEANGTFKAFTLDDADAAFERFQPLKYSQHLRFSEGGRGAGVTITPYAAGHIIGGSLWRICWQTDDNDIVYAVSYNHRREEHLNGGAVETLSRPSIMITDAHQVLT-------------MQPKPPRKRASDLTEMVTATVRKGGNVLLPCDTAGRVLELLLLLDHHWTRNKLGSYPLVLLHSMAFNTGEFAKSQLEWMSDAISKQFDLQRSNPFEMRHVAMAHSLEELQALGTGPMVVLATDLSLDFGFAKALLLAWAADPLNLVLLTQRGHGDSVARELLRGVT----------AHVRAAAAAG-------------------------------------GVEEAPKQRIVVEVPERVPLVGEELTAYLEEXXXXXXXXXXXXXXXXXAEEMERGQGLADSXXXXXXXXXXAAVAHVNKRRRLVNASLFSKFSKPQHLMFGFHDAMVEVDDYGVREAEPIAWLAVSMQERNDTS-------------------------------GLIHEEGQRRLLEQQATAAHLSSAMQVVGLSDADGAVSAATAAAQTALRSDSAFYEDTGVLPSKVVLQERELVVRARVAYIDMEGLSDGRSVRNLLATVGPRQLVLVGGSVKAVSALSEDAR------------------------------------DRHICSAVFTPRSGDTVRAALDTDVFDVLVHDSLYTRLRWQSVKGYELAQVDSAVAPQPRPSGVLGKRERPPPPILFPPQDREEGETGRPAVFVSFGDVQLT-QLSTALRKAGMTTALAAAKLTVSGTIVVTKGADGLLKIDGPLSDTYFAVRSIMYRQYTIV 854
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A6U9RRA8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A6U9RRA8_9CHLO) HSP 1 Score: 355 bits (912), Expect = 3.380e-103 Identity = 181/393 (46.06%), Postives = 251/393 (63.87%), Query Frame = 1
Query: 745 KVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKMEYRKSE 1923
+ F PL G G EP+ +LEV LLDCGWD + L+ L V+++D VL+SH D +HLG LPYA GKLG+ VYATLPV KMGQM +YD Y+S+ E ++ F+L+DVD AF F ++++Q + +G+G G+TITP+ AG +G WR++ + ED I+YA YNH ERHL +AL T RP+VLITDA+N LT + T+++ R+ L+ VM T+R GGNVL+P DTA RVLELL++L+ HW+ ++G Y LVLL+N A+N EFAKS LE+M+ DI ++F+ R N F+ +NVH+ HSLEEL+EL D PKVV+A+ SL+ G + LL+ WAS N IL R T + + M+ ++E
Sbjct: 15 RTRFVPLCGVH----GQEPMCYLLEVDAFVFLLDCGWDDRTEVMDLKELEAHVEKVDAVLVSHADTKHLGALPYAVGKLGLDCPVYATLPVHKMGQMVLYDLYLSKRAEEEYETFNLNDVDRAFGMFNPMRYAQQINLTGKGEGITITPFPAGHSVGGTTWRITKEAED--ILYAVDYNHRKERHLNGAALHTFNRPAVLITDAYNGLT--------------EQTSRKLRDRTLVAGVMQTLRSGGNVLIPVDTATRVLELLLVLDSHWEHQKIGLYSLVLLNNVAYNVVEFAKSMLEFMNSDISKSFEHTRDNVFDCKNVHLCHSLEELEELPDQPKVVLASMASLEAGLGRNLLVDWASDPDNLILFVERAQAGTLSSFIQTYMDSDETE 387
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: C1FDL7_MICCC (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FDL7_MICCC) HSP 1 Score: 354 bits (909), Expect = 5.630e-102 Identity = 180/373 (48.26%), Postives = 243/373 (65.15%), Query Frame = 1
Query: 745 KVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGR 1863
++ F+PLYG G +P +L++ G ILLDCGW+ FD LLEPL +V +D VLISHPD EHLG LPYAFGKLGMR KVYATLPV KMG M +YD ++SR +F+ F LDD+D AF+ F ++++Q G GAG+TITPYAAG M+G A+W+V +T+D +VYA +NH E+HL + L ++ RP+VLITDA NA R+ + RE +LI ++ TVR GNVL+P D AGRVLELL++L + W + +L +Y+LVLL A+NT EFA+S LEWM E +G+ FD +R N F R++ + HS++E L PKVV+A+ SLD G S+ + + WA N I+ T R
Sbjct: 7 RIKFSPLYGVQ--GIGEDPFCYVLDLDGFKILLDCGWNDSFDVNLLEPLAKVAAEVDAVLISHPDTEHLGALPYAFGKLGMRCKVYATLPVHKMGLMFMYDHFLSRNANEDFRVFTLDDIDTAFSAFVPVRYAQRSALVGHGAGITITPYAAGHMLGGALWKVHKETDD--VVYAVNFNHRREKHLNGTVLESIKRPAVLITDASNA---------------RRLPPSKTRENDLIEAILRTVRQDGNVLIPIDPAGRVLELLLVLEERWSQKQLAAYQLVLLTKVAYNTLEFARSHLEWMGEHVGQYFDRERHNAFNTRHLKLCHSIDEFRALPQGPKVVLASFGSLDAGASRHIFVEWAPDPRNLIVFTDR 360
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A7S0N1Z8_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 (Fragment) n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0N1Z8_9CHLO) HSP 1 Score: 337 bits (863), Expect = 5.720e-100 Identity = 186/389 (47.81%), Postives = 246/389 (63.24%), Query Frame = 1
Query: 745 KVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQH--LTFS-GRG--AGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLI 1896
++ FTPL GA P+S +LE+ ILLDCGW+ D ++P+ + V ID VL+SH D HLG LPY GK G++A VYATLPV KMGQM +YD Y+SR + AFDLDDVDAAFA LK+SQH LT S GR A VT+TPY AG ++G +W++S +TED +VYA +NH ERHL + L + RPS+LITDA NA + + R++EL TV +RGGG+VL+P DTAGRVLEL++ L +W +L SYKLVLL N A+NT EFAKS +EWM++ I FD R+N F+ R++H+ HS+EEL LG PK+VMA+ SL+ G ++ L + WA+ N +L G NT AR ++
Sbjct: 6 RIQFTPL----NGAHSETPLSYLLEIDDFKILLDCGWNDKLDLADIQPIVDRVPEIDAVLLSHSDTTHLGALPYLVGKKGLKAPVYATLPVHKMGQMYMYDHYLSRQAGEDQTAFDLDDVDAAFALITPLKYSQHVHLTASHGRSTSAAVTVTPYNAGHLLGGTLWKISKETED--VVYAVDFNHKKERHLNGTVLESFNRPSLLITDAFNAAN--------------RPPARAARDKELTDTVAKVLRGGGSVLIPIDTAGRVLELVLHLEQYWTVAKLASYKLVLLTNVAYNTMEFAKSHIEWMNDAISTTFDQTRTNAFKTRHLHLCHSVEELAGLGPGPKLVMASMQSLEVGPARELFVTWATNPRNLLLFPDMGQPNTLAREVM 374
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A6B2KYM6_9EUKA (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KYM6_9EUKA) HSP 1 Score: 347 bits (890), Expect = 5.940e-100 Identity = 188/383 (49.09%), Postives = 247/383 (64.49%), Query Frame = 1
Query: 748 VVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLI 1896
+ F+PL G A +P+ +LE+ ILLDCGW+ +D LL+PL+ VV +I+ VLISHPDL HLG LPYA GKLG++AK+ T+PV+KMGQM +YDAY SR + F F+LDDVDAAF F LK+SQ T SG+G + ITPYAAG +IG +W++ +T++ I+YA YNH ERHL + L TLT+P++LITDA NAL QD+ + R+ LI ++ T+R GGNVLLP DTAGRVLELLV+L+ HW H SY L+ L+N A+NT EFAKSQLEWMSE I F R N F+ NV + H E++E PKVV+A+ SL+ GF++ + + W S N I+ T T AR L+
Sbjct: 5 IKFSPLCG----AYNEDPLCYLLEIDEYRILLDCGWNDDYDVQLLKPLKRVVGKINAVLISHPDLHHLGALPYAVGKLGLKAKIIGTIPVYKMGQMFMYDAYQSRQNSEEFTVFNLDDVDAAFDNFVQLKYSQRYTLSGKGIKLEITPYAAGHLIGGTIWKIKRETDE--IIYAVDYNHKKERHLSPTILETLTQPTLLITDALNALNS-------------QDS-RGNRDSLLIESITSTLRAGGNVLLPVDTAGRVLELLVILDQHWS-HFHYSYPLLFLNNVAYNTIEFAKSQLEWMSEAIMNKFISHRENCFQFSNVKLCHKTSEVNEF-PSPKVVLASMSSLNSGFAQDIFVEWCSDAKNRIIFTDTSRPGTIARRLM 365
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: UPI00155AE16F (probable cleavage and polyadenylation specificity factor subunit 2 isoform X2 n=1 Tax=Drosophila subobscura TaxID=7241 RepID=UPI00155AE16F) HSP 1 Score: 328 bits (842), Expect = 4.030e-97 Identity = 167/374 (44.65%), Postives = 238/374 (63.64%), Query Frame = 1
Query: 781 GATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLG--SYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLI 1896
GA P IL++ V ILLDCGWD FD ++ L+ V +D VL+SHPD HLG LPY GKLG+ +YAT+PV+KMGQM +YD Y+S + G+F F LDDVD AF + LK++Q ++ G+G G++ITP AG MIG +W++ + + DIVYAT +NH ERHL L L RPS+LITDA+NA Q +R R+E+L+T ++ TVR GNVL+ DTAGR+LEL +L+ W+ G +Y L LL+N ++N EFAKSQ+EWMS+ + +AF+ R+NPF+ +++ + H+L ++ +L PKVV+A+ L+ GF++ L ++WAS N+I+LT R T A L+
Sbjct: 12 GAMDESPPCYILQIDDVRILLDCGWDEKFDPNFIKELKRQVHTLDAVLLSHPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFNMGDFDLFSLDDVDTAFEKITQLKYNQTVSLKGKGYGISITPLNAGHMIGGTIWKIV-KVGEEDIVYATDFNHKKERHLSGCELDRLQRPSLLITDAYNAQY--------------QQARRRARDEKLMTNILQTVRNNGNVLIAADTAGRMLELAHMLDQLWKNKESGLMAYSLALLNNVSYNVVEFAKSQIEWMSDKLTKAFEGARNNPFQFKHIQLCHTLADVYKLPAGPKVVLASTPDLESGFTRDLFIQWASNANNSIILTTRTSPGTLAMDLV 370
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A7S0WC87_9CHLO (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0WC87_9CHLO) HSP 1 Score: 339 bits (870), Expect = 9.160e-97 Identity = 178/374 (47.59%), Postives = 236/374 (63.10%), Query Frame = 1
Query: 745 KVVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQ-AFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGR 1863
KV+ TPLYG G +P+ + + G ILLDCGW+ FD LL PL + ID VLISHPD HLG LPYAFGKLGM KVYATLPV KMGQM +YD +++R + +FQ F LDDVD AFA F +KF Q G+G G+T+T YAAG +G AVW++ ED +VYA YN ERHL +A + RP++LITDA N GR K R+ +L ++ +VR GNVL+P D AGRVLEL++LL + W + +LGSY+++LL N A+NT +FAKS LEWM E + AF+ +R NPF+ + + + HS+EEL L PKVV+A+ SL+ G ++ L WA +N ++LTG+
Sbjct: 28 KVLVTPLYG----VKGEQPMCYHVSIDGCNILLDCGWNDQFDVDLLAPLAAIAPTIDAVLISHPDTAHLGALPYAFGKLGMNCKVYATLPVHKMGQMYMYDHFLTRQDQCDFQETFSLDDVDTAFAAFVPVKFMQLSMLRGKGEGITVTAYAAGHTLGGAVWKIGKDAED--VVYAVDYNVRKERHLNGTAFDAIHRPALLITDACNV--------------GRAVPNKATRDAQLTEAILSSVRKNGNVLIPIDPAGRVLELILLLEEKWAQRQLGSYQIILLTNVAYNTIDFAKSHLEWMGEGVTTAFERKRENPFDTKFLTLCHSMEELKALPAGPKVVLASFGSLEAGPARHLFAEWADNASNLVILTGQ 381
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: A0A7R9T8A6_MICPS (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9T8A6_MICPS) HSP 1 Score: 342 bits (878), Expect = 1.090e-96 Identity = 175/382 (45.81%), Postives = 247/382 (64.66%), Query Frame = 1
Query: 748 VVFTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNRKGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGSYKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTL 1893
V TPLYG G +P+S +L+ G ILLDCGW+ +L+PL +V +D VL+SHPD EHLG LPYAFGKLG+ KVYATLPV KMG M +YD ++SR+++ +F F LDDVD AF F ++++QH G G G+++T +AAG M+GA VW+V +ED ++YA YNH E+HL + L +L RPSVLITD+ + ++ + R++E++ ++ +VR GNVL+P D AGRVLELL+LL ++W + +LG+Y+LVLL A+NT EFA+S LEWM E++ R FD+ R N F+ R + + HS+EEL L PKVV+++ SL+ G S+ L + WAS N I+LT R T +R +
Sbjct: 94 VKVTPLYG----VYGEDPLSYLLDWDGCKILLDCGWNDRLIVEMLDPLAQVAPSVDAVLVSHPDTEHLGALPYAFGKLGLNCKVYATLPVHKMGLMYMYDHFLSRSYDTDFTLFSLDDVDKAFGSFVPVRYAQHSALEGNGHGISVTAHAAGHMLGATVWKVHKDSED--VLYAVDYNHRKEKHLNGTTLESLKRPSVLITDSLSVT---------------REVQSKTRDDEIMNVILRSVRQDGNVLIPIDPAGRVLELLLLLEENWSQKQLGAYQLVLLSTVAYNTLEFARSHLEWMGENVSRNFDIDRHNVFKTRYLTLCHSIEELHALRPGPKVVLSSFGSLECGASRHLFVEWASDPRNLIILTDRTEPGTLSREV 454
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Match: M2XHI7_GALSU (Cleavage and polyadenylation specificity factor subunit 2 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XHI7_GALSU) HSP 1 Score: 337 bits (865), Expect = 1.550e-96 Identity = 183/389 (47.04%), Postives = 243/389 (62.47%), Query Frame = 1
Query: 754 FTPLYGCDEGATGVEPVSSILEVGGVTILLDCGWDIHFDTTLLEPLREVVKRIDLVLISHPDLEHLGGLPYAFGKLGMRAKVYATLPVWKMGQMAVYDAYISRTHEGNFQAFDLDDVDAAFARFKTLKFSQHLTFSGRGAGVTITPYAAGRMIGAAVWRVSWQTEDNDIVYATAYNHDHERHLRASALGTLTRPSVLITDAHNALTGGGMSRKDLNR---KGRQDTTKRKREEELITTVMDTVRGGGNVLLPTDTAGRVLELLVLLNDHWQKHRLGS-YKLVLLHNTAFNTCEFAKSQLEWMSEDIGRAFDLQRSNPFELRNVHIMHSLEELDELGDDPKVVMATDMSLDFGFSKALLLRWASGGANTILLTGRGHGNTTARTLIAKME 1908
FTPLYG T V +LE+ ILLDCGW+ F+ TLLEPLR + R+D VLISHPDL HLG LPYA KLG+RA YATLPVW+MGQ+ +YDA+ SR + +FQ FDLDDVD+AF F LK+ Q + FS RG G+TITP+ AG MIG VW++ Q+E +IVYA +NH ERHL + L LTRPS LI A AL S + KG Q ++ E+ + T+R GG+V++P DTAGRVLEL + D W +LGS Y + ++ + +FNT +FAKS +EWMS+ + FD R NPF L+++H+ HS EL L PKV++ + SL+ GFS+ L++ S N ++L R NT A ++ +E
Sbjct: 7 FTPLYGVK---TEDLAVCYLLEIDDFRILLDCGWNDRFEETLLEPLRRIAPRVDAVLISHPDLFHLGALPYAVAKLGLRAPTYATLPVWRMGQLFMYDAHQSRAMQEDFQVFDLDDVDSAFENFIQLKYQQIVNFSERGKGITITPHPAGHMIGGTVWKI--QSETEEIVYANDFNHKRERHLNPTTLQYLTRPSHLIISASQALVRPSSSSSISGQQFPKGSQIYSRSNPLTEICEEALSTLRQGGDVVIPVDTAGRVLELALGFEDFWATEKLGSSYAVAIIEHVSFNTIDFAKSMMEWMSDAVINKFDTTRENPFHLKHIHLCHSRSELSSLLS-PKVILTSVASLECGFSRELVVEMVSNKKNKLILVDRLEPNTLAHSIYNVLE 389 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig126.2150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig126.2150.1 >prot_Ecto-sp13_S_contig126.2150.1 ID=prot_Ecto-sp13_S_contig126.2150.1|Name=mRNA_Ecto-sp13_S_contig126.2150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1043bp MAQPLDAARLAHDLSKRIMKHPGATAAAAVPGKAPLKLLQWALSQLEECAback to top mRNA from alignment at Ecto-sp13_S_contig126:24464..37591+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig126.2150.1 ID=mRNA_Ecto-sp13_S_contig126.2150.1|Name=mRNA_Ecto-sp13_S_contig126.2150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=13128bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:24464..37591+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig126:24464..37591+ >mRNA_Ecto-sp13_S_contig126.2150.1 ID=mRNA_Ecto-sp13_S_contig126.2150.1|Name=mRNA_Ecto-sp13_S_contig126.2150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:24464..37591+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |