mRNA_Ecto-sp13_S_contig9865.21509.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9865.21509.1
Unique NamemRNA_Ecto-sp13_S_contig9865.21509.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: D7FNZ5_ECTSI (DUF1279 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNZ5_ECTSI)

HSP 1 Score: 748 bits (1931), Expect = 1.120e-269
Identity = 424/471 (90.02%), Postives = 437/471 (92.78%), Query Frame = 1
Query:    1 MAMVARSLGPVQTAVLRRTRLGDGSLLLPASRTIASISGRINKASPKPSR-SLSRRNTYSTSAARGTAPVATMQPIKGPPCVLRSSGDVSGNSATCIRRNLHCNSGRAVATADWLRPPVGAVLLGQGDASRAGGMPSSGAVNQISTGGHGVVFLQAAGLRTMSRVFAPATGDAAGKKPGGEAASPSQPGSSNGHGNKTPPSPSEIRPPAGSGGRGGSNTMDPPAGKPNNPQA--AVKATGSIGDNERTVKGGNPDLREREGTFVEMRDRIRHARADASEDAKDWMRXXXXXXXXXXXXXXXXXXXXXXXXXDGTLGAQLSDQAKESSSRLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYGVLTNLPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAPAKVSDADEDEGSDADDGGGGSRKGGSTR 1404
            MAMVAR LGPVQT VLRRT LGDGSLLLPASRTIASI G INKASPKPSR S S RNTYSTSAARGTAPVATMQP+KGPPCVLRSSG V GNSATCIRRNLHCNSGRAVATADWLRP VGAVLL QGDASRAGGMPSS AVNQ+ +GGHGVVF+QAAGLRT+SRVFAPATG AAGKKPGGEAASPSQPG  NGHG+KTPPSPSEIRPPAGSGGRG S+ MDPPA K NNPQA  A K  GSIGDNERTVKGGNPDLR+REG FVEMRDRIRHARADASEDAKDWMR XXXXXXXXXXXXXXXXXXXXX   DGTLGAQLSDQAKESS+RLQDLWRKYGAVGIGTYFGIYFGSIA+FYGIYDYGVLT+LPS GTAVIEHMQEWMK+APEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIA+TPRMARALGRAPAKVSDADEDEGSDADDG GG RKGGSTR
Sbjct:    1 MAMVARRLGPVQTVVLRRTGLGDGSLLLPASRTIASIPGPINKASPKPSRRSPSCRNTYSTSAARGTAPVATMQPVKGPPCVLRSSGSVGGNSATCIRRNLHCNSGRAVATADWLRPTVGAVLLRQGDASRAGGMPSSSAVNQLPSGGHGVVFVQAAGLRTLSRVFAPATGGAAGKKPGGEAASPSQPGGGNGHGSKTPPSPSEIRPPAGSGGRGASSNMDPPAAKLNNPQAEAAEKPAGSIGDNERTVKGGNPDLRDREGPFVEMRDRIRHARADASEDAKDWMRDXXXXXXXXXXXXXXXXXXXXXARLDGTLGAQLSDQAKESSNRLQDLWRKYGAVGIGTYFGIYFGSIAVFYGIYDYGVLTSLPSGGTAVIEHMQEWMKSAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAITPRMARALGRAPAKVSDADEDEGSDADDGSGGGRKGGSTR 471          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: A0A836CLB5_9STRA (DUF1279 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLB5_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.270e-24
Identity = 51/118 (43.22%), Postives = 79/118 (66.95%), Query Frame = 1
Query:  982 QDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYGVLT--NLPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAPAKV 1329
            +++WR+YG V +GTYFGIY  ++   Y ++DYG +T  ++P+      + +Q  ++  P+WAQ   + L+  M ++   R+FVLAW T KV EPVR+L  + +TPR+ARALGRAP K+
Sbjct:    2 KEMWRRYGLVAVGTYFGIYVATLGGLYLVFDYGFMTASDMPAGAAHAGDTLQALVERLPDWAQAKVNALYAKMQQEPGFRNFVLAWLTTKVTEPVRVLATVGITPRIARALGRAPKKL 119          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: A0A3R7J9G6_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J9G6_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.900e-10
Identity = 46/120 (38.33%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  976 RLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYG-VLTNLPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARS----FVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            RL+DLWRKYG V IGTY  +Y   +   Y   D G V T+         E     +    ++ +   D      +E  R  S    F+LAW   K  EPVRL   +A+TPR+AR LGRAP
Sbjct:    6 RLKDLWRKYGIVAIGTYLSLYGAVLGSIYVAIDQGWVRTSKRRSSREGQEESFNLITTTNKFVKFAEDMGIAQYLEVERVNSKTGSFLLAWVATKFTEPVRLAVTLAVTPRIARFLGRAP 125          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: A0A024GSA6_9STRA (DUF1279 domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GSA6_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 5.880e-10
Identity = 52/133 (39.10%), Postives = 71/133 (53.38%), Query Frame = 1
Query:  955 QAKESSSRLQDLWRKYGAVGIGTYF---GIYFGSI--AIFYGIYDYGVLTNLPSEGTA---VIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAPAKV 1329
            Q++   +R +DLWRKYG V IGTYF   GI  GSI  +I  G+      T L  + T    V+    + +  A ++  G    L    V   +  SFV+AW   K  EP+RL   +A+TPR+AR LGRAP K+
Sbjct:   56 QSQTHLNRFKDLWRKYGLVAIGTYFTMYGIVLGSIYISIENGLISKNRNTRLNKDTTTNFDVVSTTNKMIALAEDY--GLVKYLDVERVNS-KTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKKI 185          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: H3GLJ1_PHYRM (DUF1279 domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLJ1_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 9.650e-10
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:  976 RLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYG-VLTN--LPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARS----FVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            RL+DLWRKYG V IGTY  +Y   +   Y   D G V TN    S+G    +     +    ++ +   D      +E  R  S    F+LAW   K  EPVRL   IA+TPR+AR LGRAP
Sbjct:   70 RLKDLWRKYGVVAIGTYLTMYGAVLGSVYLAIDQGWVRTNKRTSSKGEGQSDETFNLVTTTNKFVRFAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAP 191          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: D0MUM9_PHYIT (DUF1279 domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MUM9_PHYIT)

HSP 1 Score: 68.2 bits (165), Expect = 1.090e-9
Identity = 49/121 (40.50%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  976 RLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYGVL-TN--LPSEGTAVIEHMQEWMKNAPEWAQ---GYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            RL+DLWRKYG V IGTY  +Y   +   Y   D G L TN    S+G    +     +    +W     G +  L    V   +  +F+LAW   K  EPVRL   IA+TPR+AR LGRAP
Sbjct:   42 RLKDLWRKYGIVAIGTYLSMYGAVLGSMYLAIDQGWLRTNRRTSSKGEGQSDESFNLVATTNKWIAEDLGIAQYLEVEQVSS-KTGTFLLAWIATKFTEPVRLALTIAVTPRIARFLGRAP 161          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: M4BYX8_HYAAE (DUF1279 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BYX8_HYAAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.590e-9
Identity = 49/126 (38.89%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  976 RLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYGVL--------TNLPS-EGTAVIEHMQEWMKNAPEWAQ--GYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            RL+DLWRKYGAV +GTYF +Y   +   Y   D G +         + PS E   ++    +++K    WA+  G +  L    V + +  SF+LAW   K  EP+RL   +A TPR+AR LGRAP
Sbjct:   92 RLKDLWRKYGAVAMGTYFSLYGAVLGSIYLAIDQGWVHTDTGRNSNDKPSDENFDLVSTTNKFVK----WAEDLGIAQYLEVERV-NAKTGSFLLAWIATKFTEPLRLALTVAATPRIARFLGRAP 212          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: F0W5K2_9STRA (Uncharacterized protein AlNc14C21G2167 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5K2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 4.930e-9
Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 1
Query:  973 SRLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYGVLT---NLPSEGTA-----VIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAPAKV 1329
            +R +DLWRKYG V IGTYF +Y   +   Y   + G+++   N+ S         V+    + +  A ++  G +  L    V   +  SFV+AW   K  EP+RL   +A+TPR+AR LGRAP K+
Sbjct:    4 NRFKDLWRKYGLVAIGTYFTMYGIVLGTIYISIENGLISKNRNVRSNKDTTTDFDVVSTTNKMIALAEDY--GLAKYLDVERVNS-KTGSFVIAWVATKFTEPIRLAITLAITPRIARFLGRAPKKM 127          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: A0A6A3TMX1_9STRA (DUF1279 domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3TMX1_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 5.670e-9
Identity = 45/122 (36.89%), Postives = 59/122 (48.36%), Query Frame = 1
Query:  976 RLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYG---VLTNLPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVEDHRARS----FVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            RL+DLWRKYG V IGTY  +Y   +   Y   D G         S+G    +     +    ++ +   D      +E  R  S    F+LAW   K  EPVRL   +A+TPR+AR LGRAP
Sbjct:   66 RLKDLWRKYGVVAIGTYMSMYGVVLGSMYLAIDQGWVHTAKRSSSKGEGQADESFNLVTTTNKFVKIAEDLGIAQYLEVERVNSKTGTFLLAWIATKFTEPVRLAVTLAVTPRIARFLGRAP 187          
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Match: A0A8K1C653_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C653_PYTOL)

HSP 1 Score: 66.6 bits (161), Expect = 7.090e-9
Identity = 48/135 (35.56%), Postives = 71/135 (52.59%), Query Frame = 1
Query:  943 QLSDQAKESSSRLQDLWRKYGAVGIGTYFGIYFGSIAIFYGIYDYG-VLTNLPSE-----GTAVIEHMQEWMKN-APEWAQ--GYSDRLFGAMVEDHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAP 1320
            ++ ++ K   S+L++LWR+YG V +GTYF +YF  +   Y   + G V T   S      G A  +       N    WA+  G +  L    V + +  SFV+AW   K  EP+RL   +A+TPR+AR +GRAP
Sbjct:   84 EMVEKGKSGWSKLKELWRQYGMVAVGTYFSMYFTVLGSIYVAIEQGWVSTKRTSRSEGENGEANADFNVVTATNKVVTWAEDMGIAKHLDLQRV-NAKTGSFVIAWVATKFTEPLRLAVTLAITPRIARLVGRAP 217          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9865.21509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNZ5_ECTSI1.120e-26990.02DUF1279 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A836CLB5_9STRA1.270e-2443.22DUF1279 domain-containing protein (Fragment) n=1 T... [more]
A0A3R7J9G6_9STRA3.900e-1038.33DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A024GSA6_9STRA5.880e-1039.10DUF1279 domain-containing protein n=1 Tax=Albugo c... [more]
H3GLJ1_PHYRM9.650e-1040.16DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
D0MUM9_PHYIT1.090e-940.50DUF1279 domain-containing protein n=1 Tax=Phytopht... [more]
M4BYX8_HYAAE3.590e-938.89DUF1279 domain-containing protein n=1 Tax=Hyaloper... [more]
F0W5K2_9STRA4.930e-936.22Uncharacterized protein AlNc14C21G2167 n=1 Tax=Alb... [more]
A0A6A3TMX1_9STRA5.670e-936.89DUF1279 domain-containing protein n=3 Tax=Phytopht... [more]
A0A8K1C653_PYTOL7.090e-935.56Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9865contigEcto-sp13_S_contig9865:3046..5746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score73.9
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog42099.EPrPV00000018888
Model size1407
Hectar predicted targeting categorymitochondrion
Exons4
EggNOG free text desc.N-terminal peptidyl-methionine acetylation
EggNOG OGsKOG4526@1,KOG4526@2759
Ec32 ortholog descriptionDomain of unknown function DUF1279
Ec32 orthologEc-10_004940.1
Cds size1407
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.4292562-CDS-Ecto-sp13_S_contig9865:3045..39271681464248.4292562-CDS-Ecto-sp13_S_contig9865:3045..3927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9865 3046..3927 +
1681464248.4421096-CDS-Ecto-sp13_S_contig9865:4564..46661681464248.4421096-CDS-Ecto-sp13_S_contig9865:4564..4666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9865 4565..4666 +
1681464248.4540179-CDS-Ecto-sp13_S_contig9865:4904..50451681464248.4540179-CDS-Ecto-sp13_S_contig9865:4904..5045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9865 4905..5045 +
1681464248.464569-CDS-Ecto-sp13_S_contig9865:5464..57461681464248.464569-CDS-Ecto-sp13_S_contig9865:5464..5746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9865 5465..5746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9865.21509.1prot_Ecto-sp13_S_contig9865.21509.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9865 3046..5746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9865.21509.1

>prot_Ecto-sp13_S_contig9865.21509.1 ID=prot_Ecto-sp13_S_contig9865.21509.1|Name=mRNA_Ecto-sp13_S_contig9865.21509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=469bp
MAMVARSLGPVQTAVLRRTRLGDGSLLLPASRTIASISGRINKASPKPSR
SLSRRNTYSTSAARGTAPVATMQPIKGPPCVLRSSGDVSGNSATCIRRNL
HCNSGRAVATADWLRPPVGAVLLGQGDASRAGGMPSSGAVNQISTGGHGV
VFLQAAGLRTMSRVFAPATGDAAGKKPGGEAASPSQPGSSNGHGNKTPPS
PSEIRPPAGSGGRGGSNTMDPPAGKPNNPQAAVKATGSIGDNERTVKGGN
PDLREREGTFVEMRDRIRHARADASEDAKDWMRDKRDDMNTMKETLRDAR
RDLRNARRDGTLGAQLSDQAKESSSRLQDLWRKYGAVGIGTYFGIYFGSI
AIFYGIYDYGVLTNLPSEGTAVIEHMQEWMKNAPEWAQGYSDRLFGAMVE
DHRARSFVLAWATCKVLEPVRLLGAIAMTPRMARALGRAPAKVSDADEDE
GSDADDGGGGSRKGGSTR*
back to top

mRNA from alignment at Ecto-sp13_S_contig9865:3046..5746+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9865.21509.1 ID=mRNA_Ecto-sp13_S_contig9865.21509.1|Name=mRNA_Ecto-sp13_S_contig9865.21509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2701bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9865:3046..5746+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTATGGTTGCGCGAAGTCTGGGACCAGTGCAAACTGCTGTGTTGCG ACGTACTAGGCTTGGCGATGGCTCTCTGCTTCTTCCTGCATCGAGAACGA TAGCGTCGATTTCCGGGCGGATCAACAAGGCCTCCCCGAAGCCGAGTCGT AGCCTGTCACGCAGGAACACGTACTCAACATCGGCAGCACGAGGAACCGC CCCTGTGGCCACGATGCAACCGATAAAAGGGCCGCCGTGTGTACTCAGGT CTAGCGGTGACGTTAGCGGGAATAGCGCCACTTGCATTCGGCGCAACCTG CATTGCAACAGCGGTAGAGCTGTTGCTACTGCAGACTGGCTGCGCCCTCC AGTCGGTGCTGTACTGCTGGGCCAGGGCGATGCATCAAGGGCGGGAGGCA TGCCTTCGTCGGGCGCGGTGAATCAAATATCAACGGGAGGGCACGGTGTA GTGTTCCTGCAGGCGGCAGGCTTGCGGACAATGTCGCGCGTGTTCGCACC TGCTACCGGTGACGCTGCTGGCAAGAAGCCGGGAGGAGAGGCCGCCTCCC CGTCACAACCGGGTAGCAGTAACGGTCATGGCAACAAGACTCCACCGTCC CCCAGTGAGATTCGACCACCAGCGGGTTCCGGAGGTCGTGGTGGGAGCAA CACCATGGACCCTCCTGCGGGGAAGCCAAACAACCCCCAAGCCGCTGTAA AAGCAACAGGGTCGATAGGCGACAACGAGCGAACCGTCAAGGGTGGAAAT CCTGATCTTCGGGAGCGGGAAGGCACCTTCGTCGAGATGCGCGACAGGAT AAGGCACGCCAGGGCCGACGCCAGCGAGGACGCCAAGGACTGGATGAGGG ACAAGAGAGATGACATGAACACCATGAAAGAGGTATGGAACCCATCAGCC CCCCGCCAAACACGGGAATAATACGGGAATAATCTAACTGCAGCAGTAGT GTGTCGATCCTTAGACGATGCCCCTTCATCAGTAGCTCGAGCCACAAGGC ATTGAAGAAGAGAAGCCTGACCAGAGGGATGTATTCATGAATGCTGTTGT TTGGGAACGGTGCTCACTCACGCCGGCAGAAGCAAAGGTGCCGGAGATAA ATTGTCTTGTATGTACAAGGCGGTGTTCTTTTCATTATTGGTGGAAACAG AAACTCCAAAGGCAGCTTTGCACCCAGCGGCTGCTAAACGCGCGCCTTGT GGCCGTTCCGTCTTCGCTCTCTGCCTCTGTCTGTCTCTTTCCGTACACCA ACCTGTCGGTAGGCGCGCTCGCAATGCGTGTCATTATTACCTCTTCTTCT TTGCTCCATGTGCATACGTACCTCCGTGAAACTTCTAAATATTGATCTTT GTTTTCGGATGTCCGAGACAAGGAGGCAAACCGAAGACCTTCCCCGTATC ACTTTCATGAGTTCTCGCGCAACTGCGACGCGTGCTGTGTTGTCCCTTGA TCCCTTGCTCACCACTTCACCCCCACTTCGGCCGATGAAATGGGTTTTGA CCATCTCGCCTCTTGGCAGACCCTGAGAGATGCCCGTCGAGACTTGAGAA ACGCTCGCCGAGACGGGACGCTCGGAGCGCAGCTTTCCGACCAGGCCAAG GAGAGCTCGAGTCGCCTGCAGGTTGGTTTTTGCGTCCTTGCGCTGTGCCA TCTTTGGTTGATTCGGGTGTGTTTTCTCGTTCACTCGTGTTGAAAGCCCG AAGCGATGGCTGCCTTTGTATCAAAGACAAGCAAGTACGCGCGGACCCCG GCGGGAGAGAGGAGCAGCGGCGACCATAGCCACAGGCGGGGGTGCCGTCT ACGTCTGACGTTCATGGTGCATGTTCCAACTCGCACGACGGTAAACTGTT GAATGGCAGGATCTCTGGCGCAAGTACGGGGCGGTGGGTATCGGGACGTA CTTCGGCATCTATTTCGGGAGCATCGCGATCTTCTACGGGATCTACGACT ACGGGGTCTTGACCAATCTGCCCTCGGAGGGTACGGCGGTGATCGAGCAC GTGAGATTGATTGCCGTCCCCCCACCGCGTGGTTGGATAGATGCAGGGTT GCCGAAATAGTTTGGAATAGGAAGGTGACAAAGCGCCTGCAGTGTTGGAA GCCGTATCCTTTGAGTATGTGTACCACGGCGTTCGTCGTATTGGGAATGG GTGATGATCAGCACGTCGTTGGATCTGCAACAGGACGCCTGTTCGGTTGT TCGGAGTGGTGTCCCCTACCTCTCCATAAGGGCGATACATAGCGTACAGC GTAGTCATGCCGTACGTAAGGCAGGATTCGGACTGCAGCTCTGGCGACGG GAAAAACCAAACCCTCGTTTCACGAACCGCAGCACTGGGTCAGTCAATGG CCGACGATATACCCCAGACGACGCCCCCCTAATTGTTCTGGGACCTGTGT TCGTGGTTTTCGGTATCAGATGCAAGAATGGATGAAGAACGCGCCGGAGT GGGCCCAGGGCTATTCGGACAGGCTTTTCGGGGCCATGGTCGAGGACCAC CGCGCCCGAAGCTTTGTCCTCGCTTGGGCCACGTGTAAGGTGCTCGAGCC GGTGCGGCTGCTTGGCGCGATCGCTATGACGCCGAGGATGGCGCGTGCTC TGGGCAGAGCCCCCGCCAAGGTTTCCGATGCCGACGAGGACGAGGGCTCG GACGCGGACGACGGTGGTGGGGGTAGCAGGAAAGGGGGTAGCACGCGATA G
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9865:3046..5746+

>mRNA_Ecto-sp13_S_contig9865.21509.1 ID=mRNA_Ecto-sp13_S_contig9865.21509.1|Name=mRNA_Ecto-sp13_S_contig9865.21509.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1407bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9865:3046..5746+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTATGGTTGCGCGAAGTCTGGGACCAGTGCAAACTGCTGTGTTGCG
ACGTACTAGGCTTGGCGATGGCTCTCTGCTTCTTCCTGCATCGAGAACGA
TAGCGTCGATTTCCGGGCGGATCAACAAGGCCTCCCCGAAGCCGAGTCGT
AGCCTGTCACGCAGGAACACGTACTCAACATCGGCAGCACGAGGAACCGC
CCCTGTGGCCACGATGCAACCGATAAAAGGGCCGCCGTGTGTACTCAGGT
CTAGCGGTGACGTTAGCGGGAATAGCGCCACTTGCATTCGGCGCAACCTG
CATTGCAACAGCGGTAGAGCTGTTGCTACTGCAGACTGGCTGCGCCCTCC
AGTCGGTGCTGTACTGCTGGGCCAGGGCGATGCATCAAGGGCGGGAGGCA
TGCCTTCGTCGGGCGCGGTGAATCAAATATCAACGGGAGGGCACGGTGTA
GTGTTCCTGCAGGCGGCAGGCTTGCGGACAATGTCGCGCGTGTTCGCACC
TGCTACCGGTGACGCTGCTGGCAAGAAGCCGGGAGGAGAGGCCGCCTCCC
CGTCACAACCGGGTAGCAGTAACGGTCATGGCAACAAGACTCCACCGTCC
CCCAGTGAGATTCGACCACCAGCGGGTTCCGGAGGTCGTGGTGGGAGCAA
CACCATGGACCCTCCTGCGGGGAAGCCAAACAACCCCCAAGCCGCTGTAA
AAGCAACAGGGTCGATAGGCGACAACGAGCGAACCGTCAAGGGTGGAAAT
CCTGATCTTCGGGAGCGGGAAGGCACCTTCGTCGAGATGCGCGACAGGAT
AAGGCACGCCAGGGCCGACGCCAGCGAGGACGCCAAGGACTGGATGAGGG
ACAAGAGAGATGACATGAACACCATGAAAGAGACCCTGAGAGATGCCCGT
CGAGACTTGAGAAACGCTCGCCGAGACGGGACGCTCGGAGCGCAGCTTTC
CGACCAGGCCAAGGAGAGCTCGAGTCGCCTGCAGGATCTCTGGCGCAAGT
ACGGGGCGGTGGGTATCGGGACGTACTTCGGCATCTATTTCGGGAGCATC
GCGATCTTCTACGGGATCTACGACTACGGGGTCTTGACCAATCTGCCCTC
GGAGGGTACGGCGGTGATCGAGCACATGCAAGAATGGATGAAGAACGCGC
CGGAGTGGGCCCAGGGCTATTCGGACAGGCTTTTCGGGGCCATGGTCGAG
GACCACCGCGCCCGAAGCTTTGTCCTCGCTTGGGCCACGTGTAAGGTGCT
CGAGCCGGTGCGGCTGCTTGGCGCGATCGCTATGACGCCGAGGATGGCGC
GTGCTCTGGGCAGAGCCCCCGCCAAGGTTTCCGATGCCGACGAGGACGAG
GGCTCGGACGCGGACGACGGTGGTGGGGGTAGCAGGAAAGGGGGTAGCAC
GCGATAG
back to top