mRNA_Ecto-sp13_S_contig9863.21506.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9863.21506.1
Unique NamemRNA_Ecto-sp13_S_contig9863.21506.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A6H5JZN2_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZN2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 2.390e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 192
            DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC
Sbjct:  365 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 422
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: D8LEJ0_ECTSI (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 3.240e-28
Identity = 57/58 (98.28%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 192
            DPS+RSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC
Sbjct:   19 DPSVRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTAC 76
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A835GKE5_SPOEX (DNA helicase n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835GKE5_SPOEX)

HSP 1 Score: 64.7 bits (156), Expect = 1.710e-10
Identity = 31/65 (47.69%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213
            DPSIRS++S+ L+GAVVI+DEAHN+EG+CRD  S++++ L +     +L   SQ      DI F+
Sbjct:  244 DPSIRSSLSIDLKGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIVELEKVSQYRVANQDIEFY 308
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2H1VWR6_SPOFR (DNA helicase n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VWR6_SPOFR)

HSP 1 Score: 62.4 bits (150), Expect = 1.110e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213
            DPSIRS++S+ L GAVVI+DEAHN+EG+CRD  S++++ L +     +L   SQ      D+ ++
Sbjct:  158 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 222
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2H1VVE1_SPOFR (DNA helicase (Fragment) n=1 Tax=Spodoptera frugiperda TaxID=7108 RepID=A0A2H1VVE1_SPOFR)

HSP 1 Score: 62.4 bits (150), Expect = 1.120e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213
            DPSIRS++S+ L GAVVI+DEAHN+EG+CRD  S++++ L +     +L   SQ      D+ ++
Sbjct:  230 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 294
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A8N7W4Z7_SPOFR (Fanconi anemia group J protein homolog isoform X1 n=6 Tax=Spodoptera TaxID=7106 RepID=A0A8N7W4Z7_SPOFR)

HSP 1 Score: 62.4 bits (150), Expect = 1.130e-9
Identity = 29/65 (44.62%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDLCDCSQLTACRCDIFFF 213
            DPSIRS++S+ L GAVVI+DEAHN+EG+CRD  S++++ L +     +L   SQ      D+ ++
Sbjct:  471 DPSIRSSLSIDLTGAVVIIDEAHNIEGICRDVASVDITQLQIQNAIKELETVSQYRFANQDVEYY 535
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A7S0B927_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0B927_9DINO)

HSP 1 Score: 59.3 bits (142), Expect = 1.280e-8
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   19 DPSIR-SAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASDL 165
            DPS+R +A +L L+G VVILDEAHNVEGVCR+AGS E SL  M A+ + L
Sbjct:   95 DPSVRRTAGALDLQGCVVILDEAHNVEGVCREAGSAEFSLDQMRAVIAGL 144
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A2W1BYG9_HELAM (DNA helicase n=7 Tax=Helicoverpa TaxID=7112 RepID=A0A2W1BYG9_HELAM)

HSP 1 Score: 58.9 bits (141), Expect = 1.880e-8
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVS 132
            DPSIR++MS+ L GAVVI+DEAHN+EG+CRD  S+ ++
Sbjct:  467 DPSIRNSMSIELTGAVVIIDEAHNIEGICRDVASVNIT 504
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BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A812QM34_SYMPI (Rtel1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812QM34_SYMPI)

HSP 1 Score: 58.5 bits (140), Expect = 2.570e-8
Identity = 28/42 (66.67%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   19 DPSIRSAMSLA---LEGAVVILDEAHNVEGVCRDAGSLEVSL 135
            DPS+R A  L+   L G +V+LDEAHNVEGVCRDAGS E+SL
Sbjct:  441 DPSVRQAAGLSCADLSGRIVVLDEAHNVEGVCRDAGSAEISL 482
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Match: A0A7S0D6L2_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D6L2_MICPS)

HSP 1 Score: 58.2 bits (139), Expect = 3.470e-8
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   19 DPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVAMASD 162
            DPS+R+AM + + GA+VILDEAHNVE  CR+A S +V L D+ A A +
Sbjct:  281 DPSVRAAMDVDIAGALVILDEAHNVEDTCREAASCDVHLHDLRAAAEE 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9863.21506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZN2_9PHAE2.390e-28100.00Helicase ATP-binding domain-containing protein n=1... [more]
D8LEJ0_ECTSI3.240e-2898.28Helicase ATP-binding domain-containing protein n=1... [more]
A0A835GKE5_SPOEX1.710e-1047.69DNA helicase n=1 Tax=Spodoptera exigua TaxID=7107 ... [more]
A0A2H1VWR6_SPOFR1.110e-944.62DNA helicase n=1 Tax=Spodoptera frugiperda TaxID=7... [more]
A0A2H1VVE1_SPOFR1.120e-944.62DNA helicase (Fragment) n=1 Tax=Spodoptera frugipe... [more]
A0A8N7W4Z7_SPOFR1.130e-944.62Fanconi anemia group J protein homolog isoform X1 ... [more]
A0A7S0B927_9DINO1.280e-864.00Hypothetical protein (Fragment) n=1 Tax=Pyrodinium... [more]
A0A2W1BYG9_HELAM1.880e-863.16DNA helicase n=7 Tax=Helicoverpa TaxID=7112 RepID=... [more]
A0A812QM34_SYMPI2.570e-866.67Rtel1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A7S0D6L2_MICPS3.470e-856.25Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9863contigEcto-sp13_S_contig9863:5273..5485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score115.2
Seed ortholog evalue1.3e-23
Seed eggNOG ortholog2880.D8LEJ0
Model size213
KEGG koko:K11136,ko:K15362
KEGG Pathwayko03440,ko03460,map03440,map03460
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1132@2759
EC3.6.4.12
Cds size213
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.2537873-CDS-Ecto-sp13_S_contig9863:5272..54851681464248.2537873-CDS-Ecto-sp13_S_contig9863:5272..5485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9863 5273..5485 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9863.21506.1prot_Ecto-sp13_S_contig9863.21506.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9863 5273..5485 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9863.21506.1

>prot_Ecto-sp13_S_contig9863.21506.1 ID=prot_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
PPSKSQDPSIRSAMSLALEGAVVILDEAHNVEGVCRDAGSLEVSLLDMVA
MASDLCDCSQLTACRCDIFFF
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mRNA from alignment at Ecto-sp13_S_contig9863:5273..5485-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9863.21506.1 ID=mRNA_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9863:5273..5485- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCTCCAAATCTCAGGACCCTTCGATTCGCTCGGCGATGTCGCTCGC
GCTGGAAGGGGCCGTGGTGATCCTAGACGAGGCGCACAACGTGGAAGGCG
TTTGCAGGGACGCGGGGTCGCTTGAGGTGTCGCTGCTGGACATGGTGGCC
ATGGCCTCGGACCTGTGCGATTGCTCCCAGCTGACGGCGTGCAGGTGTGA
CATTTTTTTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9863:5273..5485-

>mRNA_Ecto-sp13_S_contig9863.21506.1 ID=mRNA_Ecto-sp13_S_contig9863.21506.1|Name=mRNA_Ecto-sp13_S_contig9863.21506.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9863:5273..5485- (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCCCTCCAAATCTCAGGACCCTTCGATTCGCTCGGCGATGTCGCTCGC
GCTGGAAGGGGCCGTGGTGATCCTAGACGAGGCGCACAACGTGGAAGGCG
TTTGCAGGGACGCGGGGTCGCTTGAGGTGTCGCTGCTGGACATGGTGGCC
ATGGCCTCGGACCTGTGCGATTGCTCCCAGCTGACGGCGTGCAGGTGTGA
CATTTTTTTTTTT
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