mRNA_Ecto-sp13_S_contig9859.21501.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9859.21501.1
Unique NamemRNA_Ecto-sp13_S_contig9859.21501.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9859.21501.1 vs. uniprot
Match: A0A6H5J5U8_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5U8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.430e-11
Identity = 33/34 (97.06%), Postives = 34/34 (100.00%), Query Frame = 2 
Query:  107 VRRSTGSSVAHSTQLMMTLTIGTVIGLVFAWQIG 208
            VRRSTGS+VAHSTQLMMTLTIGTVIGLVFAWQIG
Sbjct:  722 VRRSTGSNVAHSTQLMMTLTIGTVIGLVFAWQIG 755
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BLAST of mRNA_Ecto-sp13_S_contig9859.21501.1 vs. uniprot
Match: D7FHL4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL4_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 8.540e-11
Identity = 32/34 (94.12%), Postives = 34/34 (100.00%), Query Frame = 2 
Query:  107 VRRSTGSSVAHSTQLMMTLTIGTVIGLVFAWQIG 208
            VRRSTGS+VAHSTQL+MTLTIGTVIGLVFAWQIG
Sbjct:  740 VRRSTGSNVAHSTQLIMTLTIGTVIGLVFAWQIG 773
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BLAST of mRNA_Ecto-sp13_S_contig9859.21501.1 vs. uniprot
Match: D7FHL1_ECTSI (ATP-binding cassette, sub-family B (MDR/TAP), member 1A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.740e-8
Identity = 26/34 (76.47%), Postives = 32/34 (94.12%), Query Frame = 2 
Query:  107 VRRSTGSSVAHSTQLMMTLTIGTVIGLVFAWQIG 208
            VR++TG +VAH+TQLMMTLT+GT+IGL FAWQIG
Sbjct:  828 VRKATGGNVAHATQLMMTLTVGTLIGLAFAWQIG 861
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9859.21501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J5U8_9PHAE2.430e-1197.06ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7FHL4_ECTSI8.540e-1194.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FHL1_ECTSI1.740e-876.47ATP-binding cassette, sub-family B (MDR/TAP), memb... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9859contigEcto-sp13_S_contig9859:734..1798 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size212
Hectar predicted targeting categoryother localisation
Exons2
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.9589097-CDS-Ecto-sp13_S_contig9859:733..8101681464247.9589097-CDS-Ecto-sp13_S_contig9859:733..810Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9859 734..810 +
1681464247.970756-CDS-Ecto-sp13_S_contig9859:1665..17981681464247.970756-CDS-Ecto-sp13_S_contig9859:1665..1798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9859 1666..1798 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9859.21501.1prot_Ecto-sp13_S_contig9859.21501.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9859 734..1798 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9859.21501.1

>prot_Ecto-sp13_S_contig9859.21501.1 ID=prot_Ecto-sp13_S_contig9859.21501.1|Name=mRNA_Ecto-sp13_S_contig9859.21501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=70bp
TTSRGSIRNPPRWESLPLVLSQKPPWDASRCVSSPGAEIDREQRCPLDPA
DDDPDHRYRHWPCLRLADR*
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mRNA from alignment at Ecto-sp13_S_contig9859:734..1798+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9859.21501.1 ID=mRNA_Ecto-sp13_S_contig9859.21501.1|Name=mRNA_Ecto-sp13_S_contig9859.21501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9859:734..1798+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACATCTCGTGGTTCGATAAGGAATCCTCCGCGGTGGGAATCCTTACC
TCTCGTCTTGAGTCAGAAGCCTCCATGGTGAGTTGTTGTTGTCGTTGCTG
TTGTTGTCGGTATTGTTGTTGCTGTTGGTGTTGCTGCTCTTGCTGTTGTT
GTCATTCGTTATTTGTTGGTGTCATCGTTGCTGCCGCTGCTGCTGCTGCT
ACTGCTCCTTGTCTTTGACATGAAGGTTCGTTCCGTCTCTACTATTACCT
TGTATCTGACTCGGGGCGCCTTCCGTGAGCACGCAAGAACTATCGAGACA
ACGCATGTCATCAACGGCAGTAGAAAACCCGGGGTTGGTATCTTGCTTGT
ACCCTGGCTATCGTTGCCTCCCACACGATAACCAGCTTCAAGCGATTTTC
CCGTGGCACACCGTGCTCGTACGGGAATAACGGTTGGCGGCCTGTTAGCT
TGCAGATTTGCCCAAGAATATGTTGCTTTGAGGGAAGAGAGTGCTGCATG
CACACTTGTCGAGTTAACCATCGAAGACAAGCACCGCAGGAGGAGTGGGT
GGGAAGAGGATATCTTGTGTATGAGTGACCATGGATTGGAGCTCTCTCCC
GGCAGAAAAGCTGTGTGTGGGCGCTGATTCAAAACGATGAACGTATGAAA
GCCGGCCCCCATTCTATTCCAGTACCGTAAATGTCGGCGTATTTTTTAGT
GCGTATTTCTCCACAACCAGCGGGGTACCACTGCCGAAAAGGACAGTTTT
GGAAATATCTCGTCAAGGGCTTTTCTGAGAGGTATCGGTTGGTGTTCGTA
CCCTCCTAGTTGTGGAGAAGTACGCCACAAATAAACGCTATTTTTACAAG
GTGCCATGTCTCCGACTCTTGGGATATTTCAGAAATACGATCCTCGCTCG
AGACATTCATACGTTTCCCATGGCAAACCCAGGGATGCTTCACGGTGTGT
CTCCTCCCCAGGTGCGGAGATCGACCGGGAGCAGCGTTGCCCACTCGACC
CAGCTGATGATGACCCTGACCATCGGTACCGTCATTGGCCTTGTCTTCGC
CTGGCAGATCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9859:734..1798+

>mRNA_Ecto-sp13_S_contig9859.21501.1 ID=mRNA_Ecto-sp13_S_contig9859.21501.1|Name=mRNA_Ecto-sp13_S_contig9859.21501.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9859:734..1798+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACATCTCGTGGTTCGATAAGGAATCCTCCGCGGTGGGAATCCTTACC
TCTCGTCTTGAGTCAGAAGCCTCCATGGGATGCTTCACGGTGTGTCTCCT
CCCCAGGTGCGGAGATCGACCGGGAGCAGCGTTGCCCACTCGACCCAGCT
GATGATGACCCTGACCATCGGTACCGTCATTGGCCTTGTCTTCGCCTGGC
AGATCGGTAA
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