mRNA_Ecto-sp13_S_contig9857.21500.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9857.21500.1
Unique NamemRNA_Ecto-sp13_S_contig9857.21500.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9857.21500.1 vs. uniprot
Match: D7G0C3_ECTSI (PKS_ER domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C3_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 6.650e-6
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -3 
Query:    1 QASFLATTSTAEALCLSLGADVVVNYR 81
            +ASFLATTSTAEALCLSLGADVVVNYR
Sbjct:  177 KASFLATTSTAEALCLSLGADVVVNYR 203
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BLAST of mRNA_Ecto-sp13_S_contig9857.21500.1 vs. uniprot
Match: A0A6H5K1Q1_9PHAE (PKS_ER domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1Q1_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.440e-6
Identity = 26/27 (96.30%), Postives = 27/27 (100.00%), Query Frame = -3 
Query:    1 QASFLATTSTAEALCLSLGADVVVNYR 81
            +ASFLATTSTAEALCLSLGADVVVNYR
Sbjct:  174 KASFLATTSTAEALCLSLGADVVVNYR 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9857.21500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0C3_ECTSI6.650e-696.30PKS_ER domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5K1Q1_9PHAE8.440e-696.30PKS_ER domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9857contigEcto-sp13_S_contig9857:686..1056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size372
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.9199178-UTR-Ecto-sp13_S_contig9857:685..7561681464247.9199178-UTR-Ecto-sp13_S_contig9857:685..756Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9857 686..756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464247.9299786-CDS-Ecto-sp13_S_contig9857:756..10561681464247.9299786-CDS-Ecto-sp13_S_contig9857:756..1056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9857 757..1056 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9857.21500.1prot_Ecto-sp13_S_contig9857.21500.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9857 757..1056 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9857.21500.1

>prot_Ecto-sp13_S_contig9857.21500.1 ID=prot_Ecto-sp13_S_contig9857.21500.1|Name=mRNA_Ecto-sp13_S_contig9857.21500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MKPVVGGTSDTRGYAAHRCLSYSNANNKEELNHARTRHHPWQLRLAPFHG
PASLSGRCYTNYTHVVVVMVQDGVEASHKHFRRSGFVIHLLEVQSTHVLV
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mRNA from alignment at Ecto-sp13_S_contig9857:686..1056+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9857.21500.1 ID=mRNA_Ecto-sp13_S_contig9857.21500.1|Name=mRNA_Ecto-sp13_S_contig9857.21500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9857:686..1056+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGTAGTTGACAACGACATCGGCGCCCAGAGATAGGCACAGGGCTTCGG
CGGTGGAGGTGGTTGCCAAAAATGAAGCCTGTTGTTGGGGGGACGAGTGA
CACACGAGGTTACGCTGCTCATCGTTGTCTGTCTTACAGTAATGCAAACA
ACAAGGAAGAACTAAATCACGCACGCACACGTCACCACCCGTGGCAGCTA
AGATTGGCGCCCTTTCATGGGCCAGCCAGTCTAAGCGGTCGATGCTACAC
TAACTATACACACGTAGTCGTGGTTATGGTTCAAGACGGGGTCGAGGCAA
GCCATAAACACTTTCGTAGATCCGGGTTTGTCATACATCTACTCGAGGTC
CAAAGCACGCATGTTCTTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9857:686..1056+

>mRNA_Ecto-sp13_S_contig9857.21500.1 ID=mRNA_Ecto-sp13_S_contig9857.21500.1|Name=mRNA_Ecto-sp13_S_contig9857.21500.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9857:686..1056+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCCTGTTGTTGGGGGGACGAGTGACACACGAGGTTACGCTGCTCA
TCGTTGTCTGTCTTACAGTAATGCAAACAACAAGGAAGAACTAAATCACG
CACGCACACGTCACCACCCGTGGCAGCTAAGATTGGCGCCCTTTCATGGG
CCAGCCAGTCTAAGCGGTCGATGCTACACTAACTATACACACGTAGTCGT
GGTTATGGTTCAAGACGGGGTCGAGGCAAGCCATAAACACTTTCGTAGAT
CCGGGTTTGTCATACATCTACTCGAGGTCCAAAGCACGCATGTTCTTGTT
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